mRNA_M-pyrifera_M_contig100085.20.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig100085.20.1
Unique NamemRNA_M-pyrifera_M_contig100085.20.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
[Close]
BLAST of mRNA_M-pyrifera_M_contig100085.20.1 vs. uniprot
Match: A0A7R9XV35_9VIRI (Hypothetical protein n=1 Tax=Prasinoderma coloniale TaxID=156133 RepID=A0A7R9XV35_9VIRI)

HSP 1 Score: 66.6 bits (161), Expect = 9.200e-11
Identity = 41/88 (46.59%), Postives = 55/88 (62.50%), Query Frame = 1 
Query:   40 VAVAAVPKPPEGLDDLVRMLELCGEEV--MLPTARKGLMPLLVPLARNPDTGEVTGVLRQPMRTHGRDGGSVDLDLPIVQTNARGLTL 297
            V+ AA+  PPE LD  VR++   G E+  + P AR GL PLL+PLAR+ ++G VTG+LR P    G +G S  L  P+V+T   G TL
Sbjct:   18 VSEAALQAPPEHLDAAVRLMVASGPEMREVAPGARAGLHPLLIPLARDNESGAVTGLLRWPSAPDGSNGASASL--PVVRTAQGGATL 103
[Close]
BLAST of mRNA_M-pyrifera_M_contig100085.20.1 vs. uniprot
Match: A0A803NPH4_CANSA (Uncharacterized protein n=1 Tax=Cannabis sativa TaxID=3483 RepID=A0A803NPH4_CANSA)

HSP 1 Score: 63.5 bits (153), Expect = 2.950e-10
Identity = 34/93 (36.56%), Postives = 59/93 (63.44%), Query Frame = 1 
Query:   25 HAKYLVAVAAVPKPPEGLDDLVRMLELCGEEVMLPTARKGLMPLLVPLARNPDTGEVTGVLRQPMRTHGRDGGSVDLDLPIVQTNARGLTLLA 303
            H  ++  VA   KPP+ L  L++ML++ G+ +M P A++GL+P+++PLARN ++G +T +LR P    G       +++P+V+    G+ LLA
Sbjct:   40 HVSFIKDVATS-KPPQNLSQLMKMLKIRGDTIMSPGAKQGLIPIVIPLARN-NSGAITALLRWPTAPPG-------MEMPVVEVRKHGVWLLA 123
[Close]
BLAST of mRNA_M-pyrifera_M_contig100085.20.1 vs. uniprot
Match: A0A0N7KGG0_ORYSJ (Os03g0109700 protein n=1 Tax=Oryza sativa subsp. japonica TaxID=39947 RepID=A0A0N7KGG0_ORYSJ)

HSP 1 Score: 63.5 bits (153), Expect = 3.050e-10
Identity = 39/97 (40.21%), Postives = 59/97 (60.82%), Query Frame = 1 
Query:   13 ATGPHAKYLVAVAAVPKPPEGLDDLVRMLELCGEEVMLPTARKGLMPLLVPLARNPDTGEVTGVLRQPMRTHGRDGGSVDLDLPIVQTNARGLTLLA 303
            AT  HA ++  VAA   PPE L  L+ +L+  GE+++ P A++GL+PL+VPLA +P  G +T +LR P    G       +++P+V+    GL LLA
Sbjct:   41 ATYDHASFIKEVAAT-DPPEHLSSLLNVLQARGEKLVSPGAKRGLIPLVVPLAESP-AGNLTSLLRWPTAPSG-------MEMPVVEVRNHGLWLLA 128
[Close]
BLAST of mRNA_M-pyrifera_M_contig100085.20.1 vs. uniprot
Match: A0A7S3FHL9_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Haptolina ericina TaxID=156174 RepID=A0A7S3FHL9_9EUKA)

HSP 1 Score: 63.2 bits (152), Expect = 3.380e-10
Identity = 41/95 (43.16%), Postives = 56/95 (58.95%), Query Frame = 1 
Query:   19 GPHAKYLVAVAAVPKPPEGLDDLVRMLELCGEEVMLPTARKGLMPLLVPLARNPDTGEVTGVLRQPMRTHGRDGGSVDLDLPIVQTNARGLTLLA 303
            G H +YL  VA +  PP+ L  +  +L   GEE++ P +   + PLLVPL R+P+ GEVTG+LR P    G  GG   L  P+V+T+  GL  LA
Sbjct:   37 GSHVRYLSEVALL-MPPQALGAVAALLTSRGEELVEPGSDLAMHPLLVPLTRSPEDGEVTGLLRWP----GASGGGSKL--PLVRTDGIGLRWLA 124
[Close]
BLAST of mRNA_M-pyrifera_M_contig100085.20.1 vs. uniprot
Match: UPI001C272BFB (protein IN CHLOROPLAST ATPASE BIOGENESIS, chloroplastic-like n=2 Tax=Salvia TaxID=21880 RepID=UPI001C272BFB)

HSP 1 Score: 64.3 bits (155), Expect = 6.250e-10
Identity = 37/93 (39.78%), Postives = 61/93 (65.59%), Query Frame = 1 
Query:   25 HAKYLVAVAAVPKPPEGLDDLVRMLELCGEEVMLPTARKGLMPLLVPLARNPDTGEVTGVLRQPMRTHGRDGGSVDLDLPIVQTNARGLTLLA 303
            HA ++  VAA  KPPE L+ L+R+L++ GE+++ P A++GL+PL VPL++  ++G VT +LR P    G       +++P+V+    G+ LLA
Sbjct:   40 HASFIKDVAAA-KPPEHLNQLLRILQVRGEQIVSPGAKQGLIPLAVPLSKT-NSGSVTALLRWPTAPTG-------MEMPVVEVREYGVWLLA 123
[Close]
BLAST of mRNA_M-pyrifera_M_contig100085.20.1 vs. uniprot
Match: A0A4D9ADH2_SALSN (Uncharacterized protein n=1 Tax=Salvia splendens TaxID=180675 RepID=A0A4D9ADH2_SALSN)

HSP 1 Score: 64.3 bits (155), Expect = 7.080e-10
Identity = 37/93 (39.78%), Postives = 61/93 (65.59%), Query Frame = 1 
Query:   25 HAKYLVAVAAVPKPPEGLDDLVRMLELCGEEVMLPTARKGLMPLLVPLARNPDTGEVTGVLRQPMRTHGRDGGSVDLDLPIVQTNARGLTLLA 303
            HA ++  VAA  KPPE L+ L+R+L++ GE+++ P A++GL+PL VPL++  ++G VT +LR P    G       +++P+V+    G+ LLA
Sbjct:  128 HASFIKDVAAA-KPPEHLNQLLRILQVRGEQIVSPGAKQGLIPLAVPLSKT-NSGSVTALLRWPTAPTG-------MEMPVVEVREYGVWLLA 211
[Close]
BLAST of mRNA_M-pyrifera_M_contig100085.20.1 vs. uniprot
Match: UPI000E6FDD0C (uncharacterized protein LOC113298129 isoform X1 n=4 Tax=Papaver somniferum TaxID=3469 RepID=UPI000E6FDD0C)

HSP 1 Score: 63.9 bits (154), Expect = 8.910e-10
Identity = 38/97 (39.18%), Postives = 59/97 (60.82%), Query Frame = 1 
Query:   13 ATGPHAKYLVAVAAVPKPPEGLDDLVRMLELCGEEVMLPTARKGLMPLLVPLARNPDTGEVTGVLRQPMRTHGRDGGSVDLDLPIVQTNARGLTLLA 303
            AT  H  Y+  VAA  +PPE L+ L+ ML+  GE ++ P ARKGL+PL +PL+++  +G +T +LR P    G       +++P+V+    G+ LLA
Sbjct:   52 ATSDHISYIKDVAAT-RPPEHLNSLLNMLQSKGETIVSPGARKGLIPLAIPLSKS-QSGTITALLRWPTAPPG-------MEMPVVEVRQYGVWLLA 139
[Close]
BLAST of mRNA_M-pyrifera_M_contig100085.20.1 vs. uniprot
Match: A0A803NPH3_CANSA (Uncharacterized protein n=4 Tax=Cannabis sativa TaxID=3483 RepID=A0A803NPH3_CANSA)

HSP 1 Score: 63.5 bits (153), Expect = 1.180e-9
Identity = 34/93 (36.56%), Postives = 59/93 (63.44%), Query Frame = 1 
Query:   25 HAKYLVAVAAVPKPPEGLDDLVRMLELCGEEVMLPTARKGLMPLLVPLARNPDTGEVTGVLRQPMRTHGRDGGSVDLDLPIVQTNARGLTLLA 303
            H  ++  VA   KPP+ L  L++ML++ G+ +M P A++GL+P+++PLARN ++G +T +LR P    G       +++P+V+    G+ LLA
Sbjct:   40 HVSFIKDVATS-KPPQNLSQLMKMLKIRGDTIMSPGAKQGLIPIVIPLARN-NSGAITALLRWPTAPPG-------MEMPVVEVRKHGVWLLA 123
[Close]
BLAST of mRNA_M-pyrifera_M_contig100085.20.1 vs. uniprot
Match: A0A803NQ14_CANSA (Fe2OG dioxygenase domain-containing protein n=1 Tax=Cannabis sativa TaxID=3483 RepID=A0A803NQ14_CANSA)

HSP 1 Score: 63.5 bits (153), Expect = 1.390e-9
Identity = 34/93 (36.56%), Postives = 59/93 (63.44%), Query Frame = 1 
Query:   25 HAKYLVAVAAVPKPPEGLDDLVRMLELCGEEVMLPTARKGLMPLLVPLARNPDTGEVTGVLRQPMRTHGRDGGSVDLDLPIVQTNARGLTLLA 303
            H  ++  VA   KPP+ L  L++ML++ G+ +M P A++GL+P+++PLARN ++G +T +LR P    G       +++P+V+    G+ LLA
Sbjct:  405 HVSFIKDVATS-KPPQNLSQLMKMLKIRGDTIMSPGAKQGLIPIVIPLARN-NSGAITALLRWPTAPPG-------MEMPVVEVRKHGVWLLA 488
[Close]
BLAST of mRNA_M-pyrifera_M_contig100085.20.1 vs. uniprot
Match: A0A833RGI6_9POAL (Uncharacterized protein n=1 Tax=Carex littledalei TaxID=544730 RepID=A0A833RGI6_9POAL)

HSP 1 Score: 63.2 bits (152), Expect = 1.640e-9
Identity = 36/96 (37.50%), Postives = 60/96 (62.50%), Query Frame = 1 
Query:   16 TGPHAKYLVAVAAVPKPPEGLDDLVRMLELCGEEVMLPTARKGLMPLLVPLARNPDTGEVTGVLRQPMRTHGRDGGSVDLDLPIVQTNARGLTLLA 303
            T  HA ++  VAA  +PP+ L  L+ ML+  GE ++ P A+KGL+PL++PL+ +P +G +T +LR P           ++++P+V+ +  GL LLA
Sbjct:   44 TSDHAPFIKDVAAT-RPPDHLQCLLNMLQAKGENIVSPGAKKGLVPLIIPLSESP-SGTLTSLLRWPT-------APPEMEMPVVEVHRHGLWLLA 130
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig100085.20.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7R9XV35_9VIRI9.200e-1146.59Hypothetical protein n=1 Tax=Prasinoderma colonial... [more]
A0A803NPH4_CANSA2.950e-1036.56Uncharacterized protein n=1 Tax=Cannabis sativa Ta... [more]
A0A0N7KGG0_ORYSJ3.050e-1040.21Os03g0109700 protein n=1 Tax=Oryza sativa subsp. j... [more]
A0A7S3FHL9_9EUKA3.380e-1043.16Hypothetical protein (Fragment) n=1 Tax=Haptolina ... [more]
UPI001C272BFB6.250e-1039.78protein IN CHLOROPLAST ATPASE BIOGENESIS, chloropl... [more]
A0A4D9ADH2_SALSN7.080e-1039.78Uncharacterized protein n=1 Tax=Salvia splendens T... [more]
UPI000E6FDD0C8.910e-1039.18uncharacterized protein LOC113298129 isoform X1 n=... [more]
A0A803NPH3_CANSA1.180e-936.56Uncharacterized protein n=4 Tax=Cannabis sativa Ta... [more]
A0A803NQ14_CANSA1.390e-936.56Fe2OG dioxygenase domain-containing protein n=1 Ta... [more]
A0A833RGI6_9POAL1.640e-937.50Uncharacterized protein n=1 Tax=Carex littledalei ... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig100085contigM-pyrifera_M_contig100085:316..683 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score67.4
Seed ortholog evalue4.4e-09
Seed eggNOG ortholog981085.XP_010109798.1
Hectar predicted targeting categoryother localisation
EggNOG OGs2CMYK@1,2QST0@2759,37RDM@33090,3G9GQ@35493,4JIWT@91835
Best tax levelfabids
Best eggNOG OGNA|NA|NA
Exons2
Model size303
Cds size303
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815495.4502397-CDS-M-pyrifera_M_contig100085:315..4321622815495.4502397-CDS-M-pyrifera_M_contig100085:315..432Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig100085 316..432 +
1692277437.7464647-CDS-M-pyrifera_M_contig100085:315..4321692277437.7464647-CDS-M-pyrifera_M_contig100085:315..432Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig100085 316..432 +
1622815495.4654036-CDS-M-pyrifera_M_contig100085:497..6831622815495.4654036-CDS-M-pyrifera_M_contig100085:497..683Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig100085 498..683 +
1692277437.7627769-CDS-M-pyrifera_M_contig100085:497..6831692277437.7627769-CDS-M-pyrifera_M_contig100085:497..683Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig100085 498..683 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig100085.20.1prot_M-pyrifera_M_contig100085.20.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig100085 316..683 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig100085.20.1

>prot_M-pyrifera_M_contig100085.20.1 ID=prot_M-pyrifera_M_contig100085.20.1|Name=mRNA_M-pyrifera_M_contig100085.20.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=101bp
ASKGATGPHAKYLVAVAAVPKPPEGLDDLVRMLELCGEEVMLPTARKGLM
PLLVPLARNPDTGEVTGVLRQPMRTHGRDGGSVDLDLPIVQTNARGLTLL
A
back to top

mRNA from alignment at M-pyrifera_M_contig100085:316..683+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig100085.20.1 ID=mRNA_M-pyrifera_M_contig100085.20.1|Name=mRNA_M-pyrifera_M_contig100085.20.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=368bp|location=Sequence derived from alignment at M-pyrifera_M_contig100085:316..683+ (Macrocystis pyrifera P11B4 male)
GCGTCGAAAGGGGCGACAGGACCACATGCAAAGTACCTAGTGGCAGTCGC
TGCGGTGCCGAAGCCGCCCGAAGGCCTGGATGATCTTGTGCGCATGTTGG
AGCTGTGCGGGGAAGAGGTACGCGCGGAACTGCGCGGCTGCTGCGTGAAT
CGTGCTCATGAATGGAGTCTTACGCCCTCCAGGTCATGCTTCCGACTGCG
CGGAAGGGTCTGATGCCGCTGCTGGTGCCTCTGGCGCGCAATCCAGACAC
TGGCGAGGTGACTGGAGTTCTTCGCCAGCCGATGCGCACGCACGGCCGCG
ACGGCGGCTCGGTGGACCTCGACCTGCCTATTGTGCAGACGAATGCGCGC
GGGTTGACCCTCTTGGCG
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig100085:316..683+

>mRNA_M-pyrifera_M_contig100085.20.1 ID=mRNA_M-pyrifera_M_contig100085.20.1|Name=mRNA_M-pyrifera_M_contig100085.20.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=606bp|location=Sequence derived from alignment at M-pyrifera_M_contig100085:316..683+ (Macrocystis pyrifera P11B4 male)
GCGTCGAAAGGGGCGACAGGACCACATGCAAAGTACCTAGTGGCAGTCGC
TGCGGTGCCGAAGCCGCCCGAAGGCCTGGATGATCTTGTGCGCATGTTGG
AGCTGTGCGGGGAAGAGGCGTCGAAAGGGGCGACAGGACCACATGCAAAG
TACCTAGTGGCAGTCGCTGCGGTGCCGAAGCCGCCCGAAGGCCTGGATGA
TCTTGTGCGCATGTTGGAGCTGTGCGGGGAAGAGGTCATGCTTCCGACTG
CGCGGAAGGGTCTGATGCCGCTGCTGGTGCCTCTGGCGCGCAATCCAGAC
ACTGGCGAGGTGACTGGAGTTCTTCGCCAGCCGATGCGCACGCACGGCCG
CGACGGCGGCTCGGTGGACCTCGACCTGCCTATTGTGCAGACGAATGCGC
GCGGGTTGACCCTCTTGGCGGTCATGCTTCCGACTGCGCGGAAGGGTCTG
ATGCCGCTGCTGGTGCCTCTGGCGCGCAATCCAGACACTGGCGAGGTGAC
TGGAGTTCTTCGCCAGCCGATGCGCACGCACGGCCGCGACGGCGGCTCGG
TGGACCTCGACCTGCCTATTGTGCAGACGAATGCGCGCGGGTTGACCCTC
TTGGCG
back to top