mRNA_M-pyrifera_M_contig8578.20000.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig8578.20000.1
Unique NamemRNA_M-pyrifera_M_contig8578.20000.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig8578.20000.1 vs. uniprot
Match: D8LF40_ECTSI (Putative two-pore calcium channel (Partial) (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LF40_ECTSI)

HSP 1 Score: 224 bits (571), Expect = 6.020e-66
Identity = 113/128 (88.28%), Postives = 118/128 (92.19%), Query Frame = 1 
Query:    1 ILMVCADNYEELMSDPSEHGAYIPFIVMVIVVGSMFLLSLLLGVTYDVFIEHTTEQVKTERLKELKGLNEAFATMDPTGTGKLSLVVWNRFLLHLMPRTTEQERALYFEIASRFADNLDVLGFMDLRQ 384
            ILMVCADNYE L+ D S H AY+PFIVMVIVVGSMFLLSLLLGVTYDVFIEHTTEQV  ER+KELKGLN AFATMDPTGTGKLS+VVW RFLLHLMPRTT+QERALYFEIAS FADNLDVLGFMDLRQ
Sbjct:  298 ILMVCADNYEALVHDRSTHPAYVPFIVMVIVVGSMFLLSLLLGVTYDVFIEHTTEQVNQERMKELKGLNVAFATMDPTGTGKLSMVVWERFLLHLMPRTTQQERALYFEIASSFADNLDVLGFMDLRQ 425
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BLAST of mRNA_M-pyrifera_M_contig8578.20000.1 vs. uniprot
Match: A0A6H5KF87_9PHAE (Cyclic nucleotide-binding domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KF87_9PHAE)

HSP 1 Score: 217 bits (553), Expect = 5.000e-63
Identity = 111/133 (83.46%), Postives = 119/133 (89.47%), Query Frame = 1 
Query:    1 ILMVCADNYEELMSDPSEHGAYIPFIVMVIVVGSMFLLSLLLGVTYDVFIEHTTEQVKT----ERLKELKGLNEAFATMDPTGTGKLSLVVWNRFLLHLMPRTTEQERALYFEIASRFADNLDVLGFMDLRQA 387
            ILMVCADNYE L+ D S H AY+PFIVMVIVVGSMFLLSLLLGVTYDVFIEHTTEQ ++    ER+KELKGLN AFATMDP GTGK+S+VVW RFLLHLMPRTT+QERALYFEIAS FADNLDVLGFMDLRQA
Sbjct:  298 ILMVCADNYEALVHDRSTHPAYVPFIVMVIVVGSMFLLSLLLGVTYDVFIEHTTEQARSTVNQERMKELKGLNVAFATMDPMGTGKMSMVVWERFLLHLMPRTTQQERALYFEIASNFADNLDVLGFMDLRQA 430
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BLAST of mRNA_M-pyrifera_M_contig8578.20000.1 vs. uniprot
Match: A0A7S3M3M3_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3M3M3_9STRA)

HSP 1 Score: 77.4 bits (189), Expect = 5.290e-14
Identity = 44/127 (34.65%), Postives = 72/127 (56.69%), Query Frame = 1 
Query:    4 LMVCADNYEELMSDP-SEHGAYIPFIVMVIVVGSMFLLSLLLGVTYDVFIEHTTEQVKTERLKELKGLNEAFATMDPTGTGKLSLVVWNRFLLHLMPRTTEQERALYFEIASRFADNLDVLGFMDLR 381
            L+   DN++ ++ D    + +Y+ F    I VG  FLLSL++G TY+ +     +Q+K ERLKE++GL +AF+++D    G +S + W   L    P   ++  ALYFE+ S     + VL F+ +R
Sbjct:  109 LIFTNDNFDRILPDEVMMNMSYLLFFFPCIYVGQQFLLSLIIGDTYETYKAFVKKQLKKERLKEMQGLTKAFSSLDDQKHGVISALQWKECLNKYDPSIPDEAVALYFELLSGGNSVIGVLQFLSMR 235
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BLAST of mRNA_M-pyrifera_M_contig8578.20000.1 vs. uniprot
Match: A0A482T0I9_9ARCH (Ion transporter n=1 Tax=archaeon TaxID=1906665 RepID=A0A482T0I9_9ARCH)

HSP 1 Score: 75.1 bits (183), Expect = 3.230e-13
Identity = 46/129 (35.66%), Postives = 76/129 (58.91%), Query Frame = 1 
Query:    4 LMVCADNYEELMSDP-SEHGAYIPFIVMVIVVGSMFLLSLLLGVTYDVFIEHTTEQVKTERLKELKGLNEAFATMDPTGTGKLSLVVWNRFLLHLMPRTTEQERALYFEIASRFADN-LDVLGFMDLRQ 384
            L+   DN++ L+      + +Y+ F    I VG  FLLSL++G TY+ F  +  +Q+K E+LKE++GL +AFA +D    G +S  V+   +  L P  +++  ALY+E+ S    N ++VL F+ LR+
Sbjct:   66 LIFTNDNFDRLLPGSIMVNMSYLLFFFPAIYVGQRFLLSLIIGDTYETFRSYVKKQLKKEKLKEMQGLTKAFAALDDRKCGVISDFVFKECMTCLHPGMSDEVIALYYELLSGGGVNGVNVLQFLSLRK 194
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BLAST of mRNA_M-pyrifera_M_contig8578.20000.1 vs. uniprot
Match: L1J300_GUITC (EF-hand domain-containing protein n=1 Tax=Guillardia theta (strain CCMP2712) TaxID=905079 RepID=L1J300_GUITC)

HSP 1 Score: 58.2 bits (139), Expect = 2.750e-7
Identity = 34/112 (30.36%), Postives = 62/112 (55.36%), Query Frame = 1 
Query:    4 LMVCADNYEELMSDP-SEHGAYIPFIVMVIVVGSMFLLSLLLGVTYDVFIEHTTEQVKTERLKELKGLNEAFATMDPTGTGKLSLVVWNRFLLHLMP--RTTEQERALYFEI 330
            L+   DN++ ++++   +H     F +  IV  S FL+S+ LGV +D+++E   + VK E  KE K + +AF  +D    GK+  + +   L+HL P  R  + + A++ E+
Sbjct:  250 LLSTIDNFDPVVTEAYKQHPVSFFFFLAFIVFASFFLMSVALGVMFDLYLEDHEKTVKAEAKKEEKSMAKAFQKLDVEEQGKIKWLHFREMLVHLRPKDRNVKHDIAIFKEL 361
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig8578.20000.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
D8LF40_ECTSI6.020e-6688.28Putative two-pore calcium channel (Partial) (Fragm... [more]
A0A6H5KF87_9PHAE5.000e-6383.46Cyclic nucleotide-binding domain-containing protei... [more]
A0A7S3M3M3_9STRA5.290e-1434.65Hypothetical protein n=1 Tax=Spumella elongata Tax... [more]
A0A482T0I9_9ARCH3.230e-1335.66Ion transporter n=1 Tax=archaeon TaxID=1906665 Rep... [more]
L1J300_GUITC2.750e-730.36EF-hand domain-containing protein n=1 Tax=Guillard... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig8578contigM-pyrifera_M_contig8578:642..4128 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score220.3
Seed ortholog evalue5.1e-55
Seed eggNOG ortholog2880.D8LF40
Hectar predicted targeting categorysignal anchor
EggNOG free text desc.Ion transport protein
EggNOG OGs2E9E1@1,2SFS9@2759
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons3
Model size388
Cds size381
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig8578.20000.1prot_M-pyrifera_M_contig8578.20000.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig8578 648..4128 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816767.9628577-UTR-M-pyrifera_M_contig8578:641..6471622816767.9628577-UTR-M-pyrifera_M_contig8578:641..647Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig8578 642..647 +
1692278166.7773306-UTR-M-pyrifera_M_contig8578:641..6471692278166.7773306-UTR-M-pyrifera_M_contig8578:641..647Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig8578 642..647 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816767.9757402-CDS-M-pyrifera_M_contig8578:647..8091622816767.9757402-CDS-M-pyrifera_M_contig8578:647..809Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig8578 648..809 +
1692278166.7939544-CDS-M-pyrifera_M_contig8578:647..8091692278166.7939544-CDS-M-pyrifera_M_contig8578:647..809Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig8578 648..809 +
1622816767.9919312-CDS-M-pyrifera_M_contig8578:2183..22491622816767.9919312-CDS-M-pyrifera_M_contig8578:2183..2249Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig8578 2184..2249 +
1692278166.8047445-CDS-M-pyrifera_M_contig8578:2183..22491692278166.8047445-CDS-M-pyrifera_M_contig8578:2183..2249Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig8578 2184..2249 +
1622816768.0060391-CDS-M-pyrifera_M_contig8578:3975..41281622816768.0060391-CDS-M-pyrifera_M_contig8578:3975..4128Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig8578 3976..4128 +
1692278166.8163795-CDS-M-pyrifera_M_contig8578:3975..41281692278166.8163795-CDS-M-pyrifera_M_contig8578:3975..4128Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig8578 3976..4128 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig8578.20000.1

>prot_M-pyrifera_M_contig8578.20000.1 ID=prot_M-pyrifera_M_contig8578.20000.1|Name=mRNA_M-pyrifera_M_contig8578.20000.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=127bp
MVCADNYEELMSDPSEHGAYIPFIVMVIVVGSMFLLSLLLGVTYDVFIEH
TTEQVKTERLKELKGLNEAFATMDPTGTGKLSLVVWNRFLLHLMPRTTEQ
ERALYFEIASRFADNLDVLGFMDLRQA
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mRNA from alignment at M-pyrifera_M_contig8578:642..4128+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig8578.20000.1 ID=mRNA_M-pyrifera_M_contig8578.20000.1|Name=mRNA_M-pyrifera_M_contig8578.20000.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=3487bp|location=Sequence derived from alignment at M-pyrifera_M_contig8578:642..4128+ (Macrocystis pyrifera P11B4 male)
ATTCTGATGGTGTGCGCCGACAATTACGAGGAATTGATGAGCGACCCTTC
TGAGCATGGGGCGTACATTCCGTTCATCGTCATGGTCATCGTCGTGGGGT
CGATGTTCCTGCTCTCTCTCCTCTTGGGAGTGACGTACGATGTCTTCATC
GAGCACACCACCGAACAGGTATTCTGCCGCAGCCTACCGCATCGATATGC
TGTCAATAAAGTAGACTATTAGACTAGTAGACTATTAGACTAGTAGACTA
TTAGACTATTCGTGTAGTGTATCAATGGGGTACTGCTCTAGAGTGTGACA
ATGGCGCACTGTTTGGTAGCTTATCAATTCTTGGTACTCTGTGCTATACC
GGTACTCTGTTTTGTATGAGCGTGTGAGCGTGTGAGCGTGTGAGCGTGTG
TTGCTGATCGTCAATACTCAGCATAGTCTGGATGATGTGTGGGTTCTAGT
GCGGTGAAGCGATACCGTGGCGATACGGTGTGACATGCGCAGCAGTGCCT
GTGGTGTTGTGATTTCGTACGGTTTAGCGAGGTGTGGTGTGGCGTGGCGT
GGCGTACCAGGGATATATTAAGTGTATACTACTAAAACTACAGTACTAAA
GTATTCATAGTTCGGTTAGGTAGGGCGTGTGAAATGTGGTGTAAGCTATC
AGGTATGTATATACTTGAGAACATGAATAACAGACGCCATAAGAAAAGTG
ACGATGTGTTCCACTAACCCTAACCCTAAGTAATAATAGTTGAGTAGTAA
TAATAGTTGAGTAGTAATAATAGTTGAGTAGTAATAATAGTTGAGTAGTA
ATAATAGTTGAGTAGTAATAATAGTTGAGTAGTAATAATAGTTGAGTAGT
AATAGTAGTTGAGTAGTAATAATAGTTGAGTAGTAATAATAGTTGAGTAG
TAATAGTTGAGTAGTAATAGTTGAGTAGTAATACTAGTTGAGTAGTAATA
CTAGTTGAGTAGTAATACTAGTTGAGTAGTAATATTAGTTGAGTAGTAAT
AGTAGTTGAGTAGTAATATAGTTGAGTAGTAATAGTAGTTGAGTAGTAAT
AATAGTTGAGTAGTAATACTAGTTGAGTAGTAATACTAGTTGAGTAGTAA
TACTAGTTGAGTAGTAATAATAGTTGAGTAGTAATACTAGTTGAGTAGTA
ATAATAGTTGAGTAGTACTAGTAGTTGAGTAGTAATAATAGTTGAGTAGT
AATAGTAGTTGAGTAGTAATAATAGTTGAGTAGTAATAATAGTGTAATGT
ATACACACAACTCTGTCCAGAAAAATAATGACCGAGTAGATGTAATGTAT
GTATACCTGGTATATATCTATATTTATGTACGAACTGGCCTCTCGACGGT
GTTCTCATTTCGGGACACAGCAGGGGTACTACAGAGTACTAGTTTGTATG
GCGTGCTCGATTTCAATAGCGCTCGCGTCCTCAAGCCTCTTGTCGCCGTA
CCGCAACCCCTCTCTTTACTGTCACCCTGCTACTGCTGCTGCTGCTGCTG
CTGTGCGTGTGCCATGCGTGGCTCATCTTGATGTTAATTCAGGTCAAGAC
CGAGCGACTGAAAGAGTTGAAGGGCCTTAATGAGGCCTTTGCTACCATGG
ATCCCACGGTGAGGCTTCCCCTCCCCCCCCCCGATGATGGCATGACAGCA
TGATAGCATGATAGCATGATAGGTGTTAGGTGTCCTTGCGGCGAGTTCCC
GATTGGGTAGGGTAACTGTTGACGATGCAGTTGCACCGCGGCTCTGTTTG
GTATACTAGCGCATACCAATTTTTATTGCACGAGTAGAGTGTGCAAGTGC
AGTACTACGTAGTATTAGTATTAGAAATGAACGGCAGGTGCTGGGTGGTG
CACAGGTAAAATATTAATACGAGGTATTTTTTGAGATATCGATATGATAA
TGGCATCAAAAAAATATGTTAAGAACAACTATTATGGGGAATTGTTTCTG
GGCTCCAGGAAGTGAGTTTTCAGGCCGGATTGACGGGTTTTACTCGGCTG
GACAGTCGAAAACAAAGGTAGACTCCTCAAAATGCCCCGCGGGATTTCCG
ACGGCTTTCGTTAAACAGTTTTCCGTTTCTCCAGAGCATCAGTTTGTTTT
TGGACGCAGTCAATCAGTTTTCTCTGGAGGGTCAAAAATAAGATTGTTCG
TCAGAACTGGGGCCAGAAAGAATGGATCTTTAATGATTTATTATGAAACG
CCATTATGCCCTCACAACTGCCAACATGGACGAACAGCAGTCAAACTACT
GTACGACTCTGGAGACACGGAAAAGTGCTCAAGAAATCTCTCGGAAAACT
AAGGGAGCATCCTGAGGAGTCTACCGGTGTTTTTGACCGTCCGGCCGAGT
AAATCGCGGGTTTTCGGCAATAAAAATCAGTTCTTATAAGACCGTTCAAG
GCATTATATAAAAATCTAATAGGCTATTTTAATACCTGGTAAAGCAGTAC
CATGGTATTTAACAGCAGTATGTCATACGAAGGAGTTATTTCTGTAAGAC
TGTAGGTATGCCGATGCTCGTATATTTTTAGTGTACACCGTGCTGCTGTA
TAATGTATGATGTATAGTTTTATATACCCGGTAGGTGTTTTATTTCTGTT
GATGGCGGCAGCGACTGTTAATACTCAATGCACTACGACAAGCAGTAGTA
TTAATCCTGGTGTCTTTTGATATGCTGACAATGCAGATCAGTACCTGGTC
CTATTCGCGTCCATTTCGAAGGTAGTAATCGCGTCTGAACCATGAGTACT
AAACTAAACTACACATACACAAATACTGACTGATTGATTGATATACCACC
TGGCTACCTGGCTTCTGCTGGTTTCGCCTGCTACAGCAGCAGTGGCTGAT
ACAGATACGGTATACCCATATCTGGTACCTGGTACCCCTGGTATATTGAT
ATTGATGAATAAAAAAAAACAGCTAGATGGCAGATTGAGGATTTCGTCGA
ACATCATCATCTTTGTGTGTGATACTATTACTATTACCATTACCATTACT
ATTACTATTACTATTGCTATTACTATTGCTATTACTATTGCTATTACTAT
TACTATTACTATTGCTATTACTATTACTATTACTATTACTATTACTATTC
GGGTTATGTATGTTTTATTAAGATTGTCACCGCATACACGTGTCTCTGTT
TTCGAGTGAAGTTGAACGGGGGCGTGTGAAATTTGATTTTTATTTCGTTC
GTCCTTACAGCAGTACCAGTAGCCAGTAGCCAGTCGATGAGATGAGATGA
GATGATCAAGTTACGACTGCTGTACCGTGATACTTTTTGCGTATCCCCGT
CCGGATTTGATCGGCCATCTGCGTGTGCGTGCAGGGTACCGGGAAGCTGA
GCTTGGTGGTGTGGAACCGCTTCCTTCTGCACCTCATGCCCAGGACAACG
GAGCAGGAGCGGGCGCTATACTTCGAGATCGCCTCCCGATTCGCTGATAA
CTTAGACGTTCTCGGGTTCATGGACCTTAGACAGGCG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig8578:642..4128+

>mRNA_M-pyrifera_M_contig8578.20000.1 ID=mRNA_M-pyrifera_M_contig8578.20000.1|Name=mRNA_M-pyrifera_M_contig8578.20000.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=762bp|location=Sequence derived from alignment at M-pyrifera_M_contig8578:642..4128+ (Macrocystis pyrifera P11B4 male)
ATGGTGTGCGCCGACAATTACGAGGAATTGATGAGCGACCCTTCTGAGCA
TGGGGCGTACATTCCGTTCATCGTCATGGTCATCGTCGTGGGGTCGATGT
TCCTGCTCTCTCTCCTCTTGGGAGTGACGTACGATGTCTTCATCGAGCAC
ACCACCGAACAGATGGTGTGCGCCGACAATTACGAGGAATTGATGAGCGA
CCCTTCTGAGCATGGGGCGTACATTCCGTTCATCGTCATGGTCATCGTCG
TGGGGTCGATGTTCCTGCTCTCTCTCCTCTTGGGAGTGACGTACGATGTC
TTCATCGAGCACACCACCGAACAGGTCAAGACCGAGCGACTGAAAGAGTT
GAAGGGCCTTAATGAGGCCTTTGCTACCATGGATCCCACGGTCAAGACCG
AGCGACTGAAAGAGTTGAAGGGCCTTAATGAGGCCTTTGCTACCATGGAT
CCCACGGGTACCGGGAAGCTGAGCTTGGTGGTGTGGAACCGCTTCCTTCT
GCACCTCATGCCCAGGACAACGGAGCAGGAGCGGGCGCTATACTTCGAGA
TCGCCTCCCGATTCGCTGATAACTTAGACGTTCTCGGGTTCATGGACCTT
AGACAGGCGGGTACCGGGAAGCTGAGCTTGGTGGTGTGGAACCGCTTCCT
TCTGCACCTCATGCCCAGGACAACGGAGCAGGAGCGGGCGCTATACTTCG
AGATCGCCTCCCGATTCGCTGATAACTTAGACGTTCTCGGGTTCATGGAC
CTTAGACAGGCG
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