mRNA_M-pyrifera_M_contig8575.19997.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig8575.19997.1
Unique NamemRNA_M-pyrifera_M_contig8575.19997.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig8575.19997.1 vs. uniprot
Match: D8LS33_ECTSI (Conserved Cys-containing small protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LS33_ECTSI)

HSP 1 Score: 98.2 bits (243), Expect = 8.170e-24
Identity = 44/65 (67.69%), Postives = 54/65 (83.08%), Query Frame = 1 
Query:    1 QYCAAGMLMGLPLSIHRKSYWPVTLAAVAGTAADFMDGNTNCRQQREALLACIARNESAEAAKGQ 195
            +YCAAG+L+GLPLS+H+KSYWPVTLAAVAGTAADF +G  +CR QREAL+A IAR  + +A   Q
Sbjct:   24 KYCAAGVLLGLPLSVHKKSYWPVTLAAVAGTAADFKEGTADCRPQREALMAFIARKNAGQAKAQQ 88
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BLAST of mRNA_M-pyrifera_M_contig8575.19997.1 vs. uniprot
Match: A0A225VD63_9STRA (Uncharacterized protein n=6 Tax=Phytophthora TaxID=4783 RepID=A0A225VD63_9STRA)

HSP 1 Score: 49.3 bits (116), Expect = 3.760e-5
Identity = 23/62 (37.10%), Postives = 36/62 (58.06%), Query Frame = 1 
Query:    7 CAAGMLMGLPLSIHRKSYWPVTLAAVAGTAADF-MDGNTNCRQQREALLACIARNESAEAAK 189
            C AG+L+G+P+SI RKSY P  +  V G+  D+ +   T+CR    A+   + +    +AAK
Sbjct:   38 CIAGVLVGIPISIQRKSYKPFAILGVLGSFVDYSIPYTTDCRMIHNAMQLALQQERQRDAAK 99
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BLAST of mRNA_M-pyrifera_M_contig8575.19997.1 vs. uniprot
Match: A0A2D4BKQ2_PYTIN (Uncharacterized protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BKQ2_PYTIN)

HSP 1 Score: 48.5 bits (114), Expect = 7.730e-5
Identity = 26/66 (39.39%), Postives = 36/66 (54.55%), Query Frame = 1 
Query:    7 CAAGMLMGLPLSIHRKSYWPVTLAAVAGTAADFMDGNTN-CRQQREAL-LACIARNESAEAAKGQG 198
            C AG+L+G+P+S+HRKSY P  +  V G+  D+    TN CR    AL LA     + + A    G
Sbjct:   37 CVAGVLIGIPISVHRKSYKPFAMLGVLGSFIDYSIPYTNDCRMIHNALQLALQQERQQSNAPPSSG 102
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig8575.19997.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D8LS33_ECTSI8.170e-2467.69Conserved Cys-containing small protein n=1 Tax=Ect... [more]
A0A225VD63_9STRA3.760e-537.10Uncharacterized protein n=6 Tax=Phytophthora TaxID... [more]
A0A2D4BKQ2_PYTIN7.730e-539.39Uncharacterized protein n=1 Tax=Pythium insidiosum... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig8575contigM-pyrifera_M_contig8575:883..1933 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionConserved Cys-containing small protein
Ec32 orthologEc-08_001970.1
Exons2
Model size366
Cds size348
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig8575.19997.1prot_M-pyrifera_M_contig8575.19997.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig8575 901..1933 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816767.7529044-UTR-M-pyrifera_M_contig8575:882..9001622816767.7529044-UTR-M-pyrifera_M_contig8575:882..900Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig8575 883..900 +
1692278166.6282692-UTR-M-pyrifera_M_contig8575:882..9001692278166.6282692-UTR-M-pyrifera_M_contig8575:882..900Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig8575 883..900 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816767.768194-CDS-M-pyrifera_M_contig8575:900..9931622816767.768194-CDS-M-pyrifera_M_contig8575:900..993Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig8575 901..993 +
1692278166.6402688-CDS-M-pyrifera_M_contig8575:900..9931692278166.6402688-CDS-M-pyrifera_M_contig8575:900..993Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig8575 901..993 +
1622816767.7822864-CDS-M-pyrifera_M_contig8575:1678..19331622816767.7822864-CDS-M-pyrifera_M_contig8575:1678..1933Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig8575 1679..1933 +
1692278166.6509545-CDS-M-pyrifera_M_contig8575:1678..19331692278166.6509545-CDS-M-pyrifera_M_contig8575:1678..1933Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig8575 1679..1933 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig8575.19997.1

>prot_M-pyrifera_M_contig8575.19997.1 ID=prot_M-pyrifera_M_contig8575.19997.1|Name=mRNA_M-pyrifera_M_contig8575.19997.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=116bp
MLMGLPLSIHRKSYWPVTLAAVAGTAADFMDGNTNCRQQREALLACIARN
ESAEAAKGQGARGAQPRLSEPRQEWPEPRDGGWPDQGWEEQAGDARDGGG
SEGEEQGQGEWKGKW*
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mRNA from alignment at M-pyrifera_M_contig8575:883..1933+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig8575.19997.1 ID=mRNA_M-pyrifera_M_contig8575.19997.1|Name=mRNA_M-pyrifera_M_contig8575.19997.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=1051bp|location=Sequence derived from alignment at M-pyrifera_M_contig8575:883..1933+ (Macrocystis pyrifera P11B4 male)
CAGTACTGTGCGGCTGGAATGCTGATGGGCCTCCCCCTCAGTATACACAG
AAAGAGCTACTGGCCGGTCACCCTGGCTGCAGTGGCGGGAACAGCCGCGG
ACTTCATGGACGTGAGTGCCATCACTATCACGTATCGAAGATGTAACAAC
AAAACATACGGGGATCTGCCGTCGCTGTGCACAAGTTCAGTAAAAAAAAA
TCTATGTGGAGGGTGGTCTATCGAGACTATCGCCAAGCCTTAGGGTAGAG
GCACGGTGGGACTGCGGTATTGAAGTAAGGAGCGCAGGGTGTCATTGCTC
ACGGTATATTAAGAGTGAACGCTGCCACTTACTACCAAATACGATTGCCG
CTCGCCAACAACGTCAGGTATACATCTATAAATACAGCGTCTATATGTAG
AGCGAAATATATGCGATGCGTTTGTCCCACCACCGGACCGACGAAAACGC
GTGGGTGGGCAGCCGGTATCCCGCTAGCAGGTGGTGTCCCGCTATCAAAT
AATGTCCCCTGGTGTGTATGATATGTGACAACACATGCCACCGTTCGTCA
CCGCCCTCGAAAAATCAATCCCGCCGGTCTCCCTCGACGACAAATTTCAG
CACACAAGACAGGATGATTGGATTTTTTTCCCCGTTGACCCTGTATTTTT
TTTTCCCGGGGATTTGCTTGTTTTTTCCATGTATTGGGATCTGGTGGTGT
TTTTGTCGCGGGCGAAGCGGCTGAAAAAAGTTGGATGTTATGTCGGCAGC
TAATGCTTGTTATCTTGTACATCATAAATATCCTCCATCTCCACAGGGTA
ACACGAACTGCAGGCAGCAGAGGGAGGCGCTGCTGGCGTGCATCGCTCGC
AACGAGTCAGCTGAGGCCGCTAAAGGACAAGGCGCAAGAGGCGCCCAACC
ACGTCTCTCCGAGCCACGGCAGGAATGGCCAGAGCCGCGCGACGGAGGCT
GGCCCGATCAGGGGTGGGAAGAACAAGCCGGTGATGCTAGAGATGGTGGG
GGGAGTGAGGGGGAAGAACAAGGACAGGGGGAGTGGAAGGGAAAGTGGTG
A
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig8575:883..1933+

>mRNA_M-pyrifera_M_contig8575.19997.1 ID=mRNA_M-pyrifera_M_contig8575.19997.1|Name=mRNA_M-pyrifera_M_contig8575.19997.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=696bp|location=Sequence derived from alignment at M-pyrifera_M_contig8575:883..1933+ (Macrocystis pyrifera P11B4 male)
ATGCTGATGGGCCTCCCCCTCAGTATACACAGAAAGAGCTACTGGCCGGT
CACCCTGGCTGCAGTGGCGGGAACAGCCGCGGACTTCATGGACATGCTGA
TGGGCCTCCCCCTCAGTATACACAGAAAGAGCTACTGGCCGGTCACCCTG
GCTGCAGTGGCGGGAACAGCCGCGGACTTCATGGACGGTAACACGAACTG
CAGGCAGCAGAGGGAGGCGCTGCTGGCGTGCATCGCTCGCAACGAGTCAG
CTGAGGCCGCTAAAGGACAAGGCGCAAGAGGCGCCCAACCACGTCTCTCC
GAGCCACGGCAGGAATGGCCAGAGCCGCGCGACGGAGGCTGGCCCGATCA
GGGGTGGGAAGAACAAGCCGGTGATGCTAGAGATGGTGGGGGGAGTGAGG
GGGAAGAACAAGGACAGGGGGAGTGGAAGGGAAAGTGGTGAGGTAACACG
AACTGCAGGCAGCAGAGGGAGGCGCTGCTGGCGTGCATCGCTCGCAACGA
GTCAGCTGAGGCCGCTAAAGGACAAGGCGCAAGAGGCGCCCAACCACGTC
TCTCCGAGCCACGGCAGGAATGGCCAGAGCCGCGCGACGGAGGCTGGCCC
GATCAGGGGTGGGAAGAACAAGCCGGTGATGCTAGAGATGGTGGGGGGAG
TGAGGGGGAAGAACAAGGACAGGGGGAGTGGAAGGGAAAGTGGTGA
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