mRNA_M-pyrifera_M_contig85745.19994.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig85745.19994.1
Unique NamemRNA_M-pyrifera_M_contig85745.19994.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
[Close]
BLAST of mRNA_M-pyrifera_M_contig85745.19994.1 vs. uniprot
Match: A0A2P2IU64_RHIMU (Uncharacterized protein MANES_08G097600 n=1 Tax=Rhizophora mucronata TaxID=61149 RepID=A0A2P2IU64_RHIMU)

HSP 1 Score: 70.5 bits (171), Expect = 5.580e-13
Identity = 38/89 (42.70%), Postives = 54/89 (60.67%), Query Frame = 1 
Query:    1 MALNPPLVSATMPAAIPGEVFILRRPLIRFEASG--GGLTSSIRGEGSLYMTSVRICIVFSTPVMVNGMVRAFDVPLAYVSGEKFEQPI 261
            MALNP L+   MP     E+F+L R  + FE     G     ++ +G++Y++++R+ IV + PV   G  RAFD+PL YV GEKF QPI
Sbjct:    1 MALNPQLLDNGMPVLFVDEIFVLARDGVEFEVDKIPGSHGGHVKAKGTIYLSNIRMVIVANKPV---GDFRAFDLPLLYVHGEKFNQPI 86
[Close]
BLAST of mRNA_M-pyrifera_M_contig85745.19994.1 vs. uniprot
Match: A0A6P5F1G4_ANACO (postacrosomal sheath WW domain-binding protein n=3 Tax=Ananas comosus TaxID=4615 RepID=A0A6P5F1G4_ANACO)

HSP 1 Score: 70.5 bits (171), Expect = 5.960e-13
Identity = 41/93 (44.09%), Postives = 54/93 (58.06%), Query Frame = 1 
Query:    1 MALNPPLVSATMPAAIPGEVFILRRPLIRFE------ASGGGLTSSIRGEGSLYMTSVRICIVFSTPVMVNGMVRAFDVPLAYVSGEKFEQPI 261
            MALNPPL    MP    GE+F+L R  + FE      A GG     ++ +G++Y++++RI  V   PV   G   AFD+PL YV GEKF QPI
Sbjct:    1 MALNPPLFPNGMPVPFVGEIFVLARDGVEFEIDKIPDAPGG----HVKAKGTIYLSNIRIVFVAKKPV---GNFVAFDMPLLYVHGEKFNQPI 86
[Close]
BLAST of mRNA_M-pyrifera_M_contig85745.19994.1 vs. uniprot
Match: A0A059ADV3_EUCGR (Uncharacterized protein n=4 Tax=Myrtoideae TaxID=1699513 RepID=A0A059ADV3_EUCGR)

HSP 1 Score: 69.3 bits (168), Expect = 1.540e-12
Identity = 37/89 (41.57%), Postives = 52/89 (58.43%), Query Frame = 1 
Query:    1 MALNPPLVSATMPAAIPGEVFILRRPLIRFEASG--GGLTSSIRGEGSLYMTSVRICIVFSTPVMVNGMVRAFDVPLAYVSGEKFEQPI 261
            MALNP L    MP     E+F+L R  + FE     G     ++  G++Y++++R+  V S PV   G + AFD+PL YV+GEKF QPI
Sbjct:    1 MALNPQLFPNGMPVPFVNEMFVLARDGVEFEVDKIPGSQGGRVKARGTIYLSNIRMVFVASKPV---GSLTAFDIPLLYVNGEKFNQPI 86
[Close]
BLAST of mRNA_M-pyrifera_M_contig85745.19994.1 vs. uniprot
Match: A0A1U7ZLR2_NELNU (UPF0664 stress-induced protein C29B12.11c n=1 Tax=Nelumbo nucifera TaxID=4432 RepID=A0A1U7ZLR2_NELNU)

HSP 1 Score: 68.6 bits (166), Expect = 3.130e-12
Identity = 37/89 (41.57%), Postives = 52/89 (58.43%), Query Frame = 1 
Query:    1 MALNPPLVSATMPAAIPGEVFILRRPLIRFEAS--GGGLTSSIRGEGSLYMTSVRICIVFSTPVMVNGMVRAFDVPLAYVSGEKFEQPI 261
            MALNP L    MP     E+F+L R  + FE     G    +++ +G++Y++++R+  V S PV   G   AFD+PL YV GEKF QPI
Sbjct:    1 MALNPQLFPNGMPVPFENEMFVLSRDGVEFEIDKISGSNGGNVKAKGTIYLSNIRMVFVASKPV---GSFAAFDMPLLYVHGEKFNQPI 86
[Close]
BLAST of mRNA_M-pyrifera_M_contig85745.19994.1 vs. uniprot
Match: A0A833QRV4_9POAL (Uncharacterized protein n=1 Tax=Carex littledalei TaxID=544730 RepID=A0A833QRV4_9POAL)

HSP 1 Score: 67.8 bits (164), Expect = 6.070e-12
Identity = 37/87 (42.53%), Postives = 54/87 (62.07%), Query Frame = 1 
Query:    1 MALNPPLVSATMPAAIPGEVFILRRPLIRFEASGGGLTSSIRGEGSLYMTSVRICIVFSTPVMVNGMVRAFDVPLAYVSGEKFEQPI 261
            MALNP L    MP A  GE+F+L R  + F+        +++ +G++Y++++R+  V   PV  +G V AFD+PL YV GEKF QPI
Sbjct:    1 MALNPQLYGNGMPVAFVGEMFVLARDGVEFQVDKIPGPGNVKTKGTIYLSNIRMVFVSRKPV--DGFV-AFDMPLLYVHGEKFNQPI 84
[Close]
BLAST of mRNA_M-pyrifera_M_contig85745.19994.1 vs. uniprot
Match: A0A833VQA9_9POAL (Uncharacterized protein n=1 Tax=Carex littledalei TaxID=544730 RepID=A0A833VQA9_9POAL)

HSP 1 Score: 67.8 bits (164), Expect = 6.260e-12
Identity = 37/89 (41.57%), Postives = 53/89 (59.55%), Query Frame = 1 
Query:    1 MALNPPLVSATMPAAIPGEVFILRRPLIRFEASG--GGLTSSIRGEGSLYMTSVRICIVFSTPVMVNGMVRAFDVPLAYVSGEKFEQPI 261
            MA NP L+   +P A  GE+F+L R  + FE     G  +  ++  G++Y++++R+  V S PV   G   AFD+PL YV GEKF QPI
Sbjct:    1 MAENPQLMGNGIPVAFVGELFVLARDGVEFEIDKIPGAPSGHVKARGTVYLSNIRMVFVASQPV---GNFAAFDLPLLYVHGEKFNQPI 86
[Close]
BLAST of mRNA_M-pyrifera_M_contig85745.19994.1 vs. uniprot
Match: UPI000901DBD0 (UPF0664 stress-induced protein C29B12.11c n=2 Tax=Ipomoea TaxID=4119 RepID=UPI000901DBD0)

HSP 1 Score: 67.4 bits (163), Expect = 9.320e-12
Identity = 38/93 (40.86%), Postives = 55/93 (59.14%), Query Frame = 1 
Query:    1 MALNPPLVSATMPAAIPGEVFILRRPLIRFE------ASGGGLTSSIRGEGSLYMTSVRICIVFSTPVMVNGMVRAFDVPLAYVSGEKFEQPI 261
            MA+NP L    MP     E+F+L R  + FE      ASG G    ++ +G++Y++++R+  V   P+   G+ RAFD+PL YV GEKF QPI
Sbjct:    1 MAMNPQLFPNGMPVPFVNELFVLARDGVEFEVDKIPGASGHG--GRMKAKGTIYLSNIRMVFVADKPI---GIFRAFDMPLLYVHGEKFNQPI 88
[Close]
BLAST of mRNA_M-pyrifera_M_contig85745.19994.1 vs. uniprot
Match: A0A7N1A6Y6_KALFE (Uncharacterized protein n=2 Tax=Kalanchoe fedtschenkoi TaxID=63787 RepID=A0A7N1A6Y6_KALFE)

HSP 1 Score: 67.0 bits (162), Expect = 1.160e-11
Identity = 35/87 (40.23%), Postives = 53/87 (60.92%), Query Frame = 1 
Query:    1 MALNPPLVSATMPAAIPGEVFILRRPLIRFEASGGGLTSSIRGEGSLYMTSVRICIVFSTPVMVNGMVRAFDVPLAYVSGEKFEQPI 261
            MALNP L+   +P A   E+F+L R  + FE      +  ++ +G++Y++++R+  V S PV   G   AFD+PL Y+ GEKF QPI
Sbjct:    1 MALNPQLLPDGVPVAFFNELFVLARDGVEFEVDKIPGSDRVKAKGTIYLSNIRMVFVASKPV---GNFFAFDMPLLYIHGEKFNQPI 84
[Close]
BLAST of mRNA_M-pyrifera_M_contig85745.19994.1 vs. uniprot
Match: A0A022PRE5_ERYGU (Uncharacterized protein n=2 Tax=Erythranthe guttata TaxID=4155 RepID=A0A022PRE5_ERYGU)

HSP 1 Score: 67.0 bits (162), Expect = 1.160e-11
Identity = 36/89 (40.45%), Postives = 53/89 (59.55%), Query Frame = 1 
Query:    1 MALNPPLVSATMPAAIPGEVFILRRPLIRFEASG--GGLTSSIRGEGSLYMTSVRICIVFSTPVMVNGMVRAFDVPLAYVSGEKFEQPI 261
            MA+NP L    MP     E+F+L R  + FE     G    +++G+G+++++++R+  V S PV   G   AFD+PL YV GEKF QPI
Sbjct:    1 MAVNPQLYPNGMPVPFVNEIFVLARDGVEFEIDKIPGNQGGNVKGKGTIFLSNIRMVFVASKPV---GNFVAFDMPLLYVHGEKFNQPI 86
[Close]
BLAST of mRNA_M-pyrifera_M_contig85745.19994.1 vs. uniprot
Match: A0A2P2JMU9_RHIMU (Uncharacterized protein MANES_08G097600 n=1 Tax=Rhizophora mucronata TaxID=61149 RepID=A0A2P2JMU9_RHIMU)

HSP 1 Score: 66.2 bits (160), Expect = 2.310e-11
Identity = 38/89 (42.70%), Postives = 51/89 (57.30%), Query Frame = 1 
Query:    1 MALNPPLVSATMPAAIPGEVFILRRPLIRFEASG--GGLTSSIRGEGSLYMTSVRICIVFSTPVMVNGMVRAFDVPLAYVSGEKFEQPI 261
            MALNP L     P     EVF+L R  + FE     G     ++  G++Y+++VRI  V + PV   G  RAFD+P+ YV GEKF+QPI
Sbjct:    1 MALNPQLFGNGTPLPFVNEVFVLVRDGVEFEVDKIPGSHGGHVKARGTIYLSNVRIVFVANKPV---GDFRAFDLPMLYVHGEKFKQPI 86
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig85745.19994.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2P2IU64_RHIMU5.580e-1342.70Uncharacterized protein MANES_08G097600 n=1 Tax=Rh... [more]
A0A6P5F1G4_ANACO5.960e-1344.09postacrosomal sheath WW domain-binding protein n=3... [more]
A0A059ADV3_EUCGR1.540e-1241.57Uncharacterized protein n=4 Tax=Myrtoideae TaxID=1... [more]
A0A1U7ZLR2_NELNU3.130e-1241.57UPF0664 stress-induced protein C29B12.11c n=1 Tax=... [more]
A0A833QRV4_9POAL6.070e-1242.53Uncharacterized protein n=1 Tax=Carex littledalei ... [more]
A0A833VQA9_9POAL6.260e-1241.57Uncharacterized protein n=1 Tax=Carex littledalei ... [more]
UPI000901DBD09.320e-1240.86UPF0664 stress-induced protein C29B12.11c n=2 Tax=... [more]
A0A7N1A6Y6_KALFE1.160e-1140.23Uncharacterized protein n=2 Tax=Kalanchoe fedtsche... [more]
A0A022PRE5_ERYGU1.160e-1140.45Uncharacterized protein n=2 Tax=Erythranthe guttat... [more]
A0A2P2JMU9_RHIMU2.310e-1142.70Uncharacterized protein MANES_08G097600 n=1 Tax=Rh... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig85745contigM-pyrifera_M_contig85745:2..412 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score68.9
Seed ortholog evalue1.3e-09
Seed eggNOG ortholog71139.XP_010032796.1
Hectar predicted targeting categoryother localisation
EggNOG free text desc.female pronucleus assembly
EggNOG OGs37JVV@33090,3G98D@35493,KOG3294@1,KOG3294@2759
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-26_001370.1
COG Functional cat.T
Best tax levelStreptophyta
Best eggNOG OGNA|NA|NA
Exons3
Model size261
Cds size261
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig85745.19994.1prot_M-pyrifera_M_contig85745.19994.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig85745 2..412 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816767.6222456-CDS-M-pyrifera_M_contig85745:1..651622816767.6222456-CDS-M-pyrifera_M_contig85745:1..65Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig85745 2..65 -
1692278166.5616624-CDS-M-pyrifera_M_contig85745:1..651692278166.5616624-CDS-M-pyrifera_M_contig85745:1..65Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig85745 2..65 -
1622816767.6326215-CDS-M-pyrifera_M_contig85745:143..2331622816767.6326215-CDS-M-pyrifera_M_contig85745:143..233Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig85745 144..233 -
1692278166.5760746-CDS-M-pyrifera_M_contig85745:143..2331692278166.5760746-CDS-M-pyrifera_M_contig85745:143..233Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig85745 144..233 -
1622816767.643965-CDS-M-pyrifera_M_contig85745:305..4121622816767.643965-CDS-M-pyrifera_M_contig85745:305..412Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig85745 306..412 -
1692278166.5888648-CDS-M-pyrifera_M_contig85745:305..4121692278166.5888648-CDS-M-pyrifera_M_contig85745:305..412Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig85745 306..412 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig85745.19994.1

>prot_M-pyrifera_M_contig85745.19994.1 ID=prot_M-pyrifera_M_contig85745.19994.1|Name=mRNA_M-pyrifera_M_contig85745.19994.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=87bp
MALNPPLVSATMPAAIPGEVFILRRPLIRFEASGGGLTSSIRGEGSLYMT
SVRICIVFSTPVMVNGMVRAFDVPLAYVSGEKFEQPI
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mRNA from alignment at M-pyrifera_M_contig85745:2..412-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig85745.19994.1 ID=mRNA_M-pyrifera_M_contig85745.19994.1|Name=mRNA_M-pyrifera_M_contig85745.19994.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=411bp|location=Sequence derived from alignment at M-pyrifera_M_contig85745:2..412- (Macrocystis pyrifera P11B4 male)
ATGGCTCTAAATCCGCCGCTTGTGTCGGCAACAATGCCAGCTGCTATTCC
TGGCGAGGTTTTCATATTGCGTCGGCCATTGATTCGGTTTGAAGCCTCAG
GTGGAGGGTAAGTGTGGAGGAATACGTCTCCATCCCTATTTTCCACGACC
TTCTCTCCGTTCCTTCCTTCTTGTTTCAGATTGACGTCGTCGATTCGAGG
AGAAGGGTCGTTGTACATGACAAGTGTGCGGATTTGTATTGTGTTCTCCA
CTCCCGTCATGGTGAACGGGTAAGGCAAAGGGATGAAGTTGATGGGATCG
GTCTTAAGAGGTGGGGAATGGGGTGTTTGTTGCGTTTGATGCAGGAGCAT
GGTGCGTGCGTTTGACGTTCCATTGGCGTATGTGAGTGGGGAAAAGTTCG
AGCAGCCGATT
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig85745:2..412-

>mRNA_M-pyrifera_M_contig85745.19994.1 ID=mRNA_M-pyrifera_M_contig85745.19994.1|Name=mRNA_M-pyrifera_M_contig85745.19994.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=522bp|location=Sequence derived from alignment at M-pyrifera_M_contig85745:2..412- (Macrocystis pyrifera P11B4 male)
ATGGCTCTAAATCCGCCGCTTGTGTCGGCAACAATGCCAGCTGCTATTCC
TGGCGAGGTTTTCATATTGCGTCGGCCATTGATTCGGTTTGAAGCCTCAG
GTGGAGGATGGCTCTAAATCCGCCGCTTGTGTCGGCAACAATGCCAGCTG
CTATTCCTGGCGAGGTTTTCATATTGCGTCGGCCATTGATTCGGTTTGAA
GCCTCAGGTGGAGGATTGACGTCGTCGATTCGAGGAGAAGGGTCGTTGTA
CATGACAAGTGTGCGGATTTGTATTGTGTTCTCCACTCCCGTCATGGTGA
ACGGATTGACGTCGTCGATTCGAGGAGAAGGGTCGTTGTACATGACAAGT
GTGCGGATTTGTATTGTGTTCTCCACTCCCGTCATGGTGAACGGCATGGT
GCGTGCGTTTGACGTTCCATTGGCGTATGTGAGTGGGGAAAAGTTCGAGC
AGCCGATTCATGGTGCGTGCGTTTGACGTTCCATTGGCGTATGTGAGTGG
GGAAAAGTTCGAGCAGCCGATT
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