mRNA_M-pyrifera_M_contig8574.19988.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig8574.19988.1
Unique NamemRNA_M-pyrifera_M_contig8574.19988.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
[Close]
BLAST of mRNA_M-pyrifera_M_contig8574.19988.1 vs. uniprot
Match: D8LRH9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRH9_ECTSI)

HSP 1 Score: 146 bits (369), Expect = 6.870e-39
Identity = 67/100 (67.00%), Postives = 81/100 (81.00%), Query Frame = 1 
Query:   19 DDSHTGFYAGYLSSAFMVGRFGSSYFWXRFADRYGRLPVVYIGLCSIAFLSVAFGLSATFLWAVACRFLLGVMNGLEGVLKTMISEVCGREHEVVGMSFI 318
            D    G+YAGY+SSAFMVGR GSSYFW RFAD +GRLPV+Y GL S+  LS+AFGLS +FLWA+ CRFLLGV+NGL G+ K M SEVCG+EHE  GM+++
Sbjct:   64 DKDEAGYYAGYVSSAFMVGRVGSSYFWGRFADSHGRLPVIYAGLTSMVVLSIAFGLSTSFLWALGCRFLLGVLNGLLGISKAMTSEVCGKEHEATGMAYV 163
[Close]
BLAST of mRNA_M-pyrifera_M_contig8574.19988.1 vs. uniprot
Match: A0A6H5L4Q8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4Q8_9PHAE)

HSP 1 Score: 131 bits (329), Expect = 9.070e-34
Identity = 65/101 (64.36%), Postives = 75/101 (74.26%), Query Frame = 1 
Query:   19 DDSHTGFYAGYLSSAFMVGRFGSSYFWXRFADRYGRLPVVYIGLCSIAFLSVAFGLSATFLWAVACRFLLGVMNGLEGVLKTMISEVCGREHEVVGMSFIT 321
            D    G+YAGYL+SAFMVGRF      X  ADRYGRLPVVYIGL SI  LS+AFGLS  F WA+ CRFLLG MNGL  + K MISE+CG++HE VGM ++T
Sbjct:   75 DKDEAGYYAGYLASAFMVGRFXXXXXXXXXADRYGRLPVVYIGLSSIGVLSLAFGLSTAFWWALTCRFLLGAMNGLIAISKCMISEICGKQHEKVGMGYVT 175
[Close]
BLAST of mRNA_M-pyrifera_M_contig8574.19988.1 vs. uniprot
Match: D8LRH7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRH7_ECTSI)

HSP 1 Score: 132 bits (332), Expect = 9.950e-34
Identity = 66/101 (65.35%), Postives = 75/101 (74.26%), Query Frame = 1 
Query:   19 DDSHTGFYAGYLSSAFMVGRFGSSYFWXRFADRYGRLPVVYIGLCSIAFLSVAFGLSATFLWAVACRFLLGVMNGLEGVLKTMISEVCGREHEVVGMSFIT 321
            D    G+YAGYL+SAFMVGRF      X  ADRYGRLPVVYIGL SI  LS+AFGLS  F WA+ CRFLLG MNGL  + K MISE+CG++HE VGM +IT
Sbjct:   43 DKDEAGYYAGYLASAFMVGRFXXXXXXXXXADRYGRLPVVYIGLSSIGVLSLAFGLSTAFWWALTCRFLLGAMNGLIAISKCMISEICGKQHETVGMGYIT 143
[Close]
BLAST of mRNA_M-pyrifera_M_contig8574.19988.1 vs. uniprot
Match: A0A6H5KX19_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KX19_9PHAE)

HSP 1 Score: 131 bits (330), Expect = 1.860e-33
Identity = 65/101 (64.36%), Postives = 76/101 (75.25%), Query Frame = 1 
Query:   19 DDSHTGFYAGYLSSAFMVGRFGSSYFWXRFADRYGRLPVVYIGLCSIAFLSVAFGLSATFLWAVACRFLLGVMNGLEGVLKTMISEVCGREHEVVGMSFIT 321
            D    G+YAG L+SAFMVGRF +S   X  ADRYGRLPVVYIGL SI  LS+AFGLS  F WA+ CRFLLG MN L G+ K MISE+CG++HE VGM ++T
Sbjct:  111 DRDEAGYYAGCLASAFMVGRFATSXXXXXXADRYGRLPVVYIGLSSIGVLSLAFGLSTAFWWALTCRFLLGAMNALMGISKCMISEICGKQHETVGMGYVT 211
[Close]
BLAST of mRNA_M-pyrifera_M_contig8574.19988.1 vs. uniprot
Match: D8LFV5_ECTSI (MFS domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LFV5_ECTSI)

HSP 1 Score: 119 bits (298), Expect = 1.040e-32
Identity = 56/97 (57.73%), Postives = 74/97 (76.29%), Query Frame = 1 
Query:   31 TGFYAGYLSSAFMVGRFGSSYFWXRFADRYGRLPVVYIGLCSIAFLSVAFGLSATFLWAVACRFLLGVMNGLEGVLKTMISEVCGREHEVVGMSFIT 321
            +G++AG LSS+FM GR  S+YFW   ADR GR PVV + L S   L+VAFG S TFLWA+ACRFLLG++NG+  +  T++SE+CG+EHEVVG+  +T
Sbjct:    3 SGYFAGLLSSSFMFGRVISAYFWGIVADRCGRRPVVLLSLASTGGLAVAFGFSTTFLWALACRFLLGLLNGMTVIFPTLVSEICGKEHEVVGLGAVT 99
[Close]
BLAST of mRNA_M-pyrifera_M_contig8574.19988.1 vs. uniprot
Match: A0A6H5JZQ3_9PHAE (MFS domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZQ3_9PHAE)

HSP 1 Score: 120 bits (300), Expect = 7.600e-30
Identity = 56/97 (57.73%), Postives = 75/97 (77.32%), Query Frame = 1 
Query:   31 TGFYAGYLSSAFMVGRFGSSYFWXRFADRYGRLPVVYIGLCSIAFLSVAFGLSATFLWAVACRFLLGVMNGLEGVLKTMISEVCGREHEVVGMSFIT 321
            +G++AG LSS+FMVGR  S+YFW   ADR GR PVV + L S   L+VAFG S TFLWA+ACRFLLG++NG+  +  +++SE+CG+EHEVVG+  +T
Sbjct:    3 SGYFAGLLSSSFMVGRVISAYFWGIIADRCGRRPVVLLSLASTGGLAVAFGFSTTFLWALACRFLLGLLNGMTVIFPSLVSEICGKEHEVVGLGAVT 99
[Close]
BLAST of mRNA_M-pyrifera_M_contig8574.19988.1 vs. uniprot
Match: A0A3S4NAX3_9MAGN (Protein ZINC INDUCED FACILITATOR-LIKE 1-like protein n=1 Tax=Cinnamomum micranthum f. kanehirae TaxID=337451 RepID=A0A3S4NAX3_9MAGN)

HSP 1 Score: 104 bits (260), Expect = 4.020e-24
Identity = 49/100 (49.00%), Postives = 67/100 (67.00%), Query Frame = 1 
Query:   22 DSHTGFYAGYLSSAFMVGRFGSSYFWXRFADRYGRLPVVYIGLCSIAFLSVAFGLSATFLWAVACRFLLGVMNGLEGVLKTMISEVCGREHEVVGMSFIT 321
            D   GFYAGY+ S+FMVGR  +S FW   ADRYGR PV+ IG+ S+   +  FGLS +F  A++ RFLLG+ +GL G +   +SEVC  EH  +G+S ++
Sbjct:   71 DQDIGFYAGYIGSSFMVGRAMASIFWGIIADRYGRKPVIMIGITSVIIFNTLFGLSTSFWMAISTRFLLGIFSGLFGTIMAYVSEVCREEHRALGISIVS 170
[Close]
BLAST of mRNA_M-pyrifera_M_contig8574.19988.1 vs. uniprot
Match: A0A7C9AF44_OPUST (MFS domain-containing protein (Fragment) n=1 Tax=Opuntia streptacantha TaxID=393608 RepID=A0A7C9AF44_OPUST)

HSP 1 Score: 103 bits (257), Expect = 5.310e-24
Identity = 52/100 (52.00%), Postives = 65/100 (65.00%), Query Frame = 1 
Query:   22 DSHTGFYAGYLSSAFMVGRFGSSYFWXRFADRYGRLPVVYIGLCSIAFLSVAFGLSATFLWAVACRFLLGVMNGLEGVLKTMISEVCGREHEVVGMSFIT 321
            +   G+YAG++ SAFM+GR  +S FW   ADRYGR PV+  G  ++   +  FGLS  F  AV+ RFLLG +NGL G  K  ISEVC  EH+ VGMS IT
Sbjct:   72 EEDVGYYAGFVGSAFMLGRALTSVFWGTIADRYGRKPVMIFGAAAVVIFNTLFGLSVNFWMAVSTRFLLGSLNGLLGPAKAYISEVCREEHQAVGMSVIT 171
[Close]
BLAST of mRNA_M-pyrifera_M_contig8574.19988.1 vs. uniprot
Match: A0A7J7N9S1_9MAGN (Uncharacterized protein n=1 Tax=Kingdonia uniflora TaxID=39325 RepID=A0A7J7N9S1_9MAGN)

HSP 1 Score: 102 bits (254), Expect = 4.030e-23
Identity = 48/96 (50.00%), Postives = 64/96 (66.67%), Query Frame = 1 
Query:   34 GFYAGYLSSAFMVGRFGSSYFWXRFADRYGRLPVVYIGLCSIAFLSVAFGLSATFLWAVACRFLLGVMNGLEGVLKTMISEVCGREHEVVGMSFIT 321
            G+YAGY+ S+FM GRF +SYFW   ADRYGR PVV  G  ++   +  FGLS  +  A+  RFLLG +NGL G +K   SE+C  EH+ +GMS ++
Sbjct:   15 GYYAGYVGSSFMFGRFLTSYFWGVVADRYGRKPVVMFGTFTVVVFNTLFGLSTNYWMALCTRFLLGSLNGLSGPMKAYASEICREEHQALGMSLVS 110
[Close]
BLAST of mRNA_M-pyrifera_M_contig8574.19988.1 vs. uniprot
Match: A0A5P1FJH8_ASPOF (MFS domain-containing protein (Fragment) n=1 Tax=Asparagus officinalis TaxID=4686 RepID=A0A5P1FJH8_ASPOF)

HSP 1 Score: 100 bits (248), Expect = 4.050e-23
Identity = 49/96 (51.04%), Postives = 65/96 (67.71%), Query Frame = 1 
Query:   34 GFYAGYLSSAFMVGRFGSSYFWXRFADRYGRLPVVYIGLCSIAFLSVAFGLSATFLWAVACRFLLGVMNGLEGVLKTMISEVCGREHEVVGMSFIT 321
            GFYAG++ +AFM GR  +S FW   ADR+GR PV+ IGL S+   +  FGLS  +  A+A RFLLG MNGL G +K   SEVC  EH+ +G+S ++
Sbjct:   27 GFYAGFVGAAFMFGRALTSVFWGILADRWGRKPVIIIGLISLIIFNTLFGLSVNYWMAIATRFLLGAMNGLLGPIKAYASEVCRPEHQSIGLSLVS 122
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig8574.19988.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LRH9_ECTSI6.870e-3967.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L4Q8_9PHAE9.070e-3464.36Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LRH7_ECTSI9.950e-3465.35Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KX19_9PHAE1.860e-3364.36Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LFV5_ECTSI1.040e-3257.73MFS domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5JZQ3_9PHAE7.600e-3057.73MFS domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A3S4NAX3_9MAGN4.020e-2449.00Protein ZINC INDUCED FACILITATOR-LIKE 1-like prote... [more]
A0A7C9AF44_OPUST5.310e-2452.00MFS domain-containing protein (Fragment) n=1 Tax=O... [more]
A0A7J7N9S1_9MAGN4.030e-2350.00Uncharacterized protein n=1 Tax=Kingdonia uniflora... [more]
A0A5P1FJH8_ASPOF4.050e-2351.04MFS domain-containing protein (Fragment) n=1 Tax=A... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig8574contigM-pyrifera_M_contig8574:7435..8142 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score147.9
Seed ortholog evalue2.7e-33
Seed eggNOG ortholog2880.D8LRH9
Hectar predicted targeting categorysignal anchor
EggNOG free text desc.major facilitator superfamily
EggNOG OGsKOG2615@1,KOG2615@2759
COG Functional cat.I
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons2
Model size321
Cds size321
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816767.41461-CDS-M-pyrifera_M_contig8574:7434..75371622816767.41461-CDS-M-pyrifera_M_contig8574:7434..7537Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig8574 7435..7537 -
1692278166.4597201-CDS-M-pyrifera_M_contig8574:7434..75371692278166.4597201-CDS-M-pyrifera_M_contig8574:7434..7537Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig8574 7435..7537 -
1622816767.4253793-CDS-M-pyrifera_M_contig8574:7924..81421622816767.4253793-CDS-M-pyrifera_M_contig8574:7924..8142Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig8574 7925..8142 -
1692278166.4739234-CDS-M-pyrifera_M_contig8574:7924..81421692278166.4739234-CDS-M-pyrifera_M_contig8574:7924..8142Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig8574 7925..8142 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig8574.19988.1prot_M-pyrifera_M_contig8574.19988.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig8574 7435..8142 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig8574.19988.1

>prot_M-pyrifera_M_contig8574.19988.1 ID=prot_M-pyrifera_M_contig8574.19988.1|Name=mRNA_M-pyrifera_M_contig8574.19988.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=107bp
MRVHQCDDSHTGFYAGYLSSAFMVGRFGSSYFWGRFADRYGRLPVVYIGL
CSIAFLSVAFGLSATFLWAVACRFLLGVMNGLEGVLKTMISEVCGREHEV
VGMSFIT
back to top

mRNA from alignment at M-pyrifera_M_contig8574:7435..8142-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig8574.19988.1 ID=mRNA_M-pyrifera_M_contig8574.19988.1|Name=mRNA_M-pyrifera_M_contig8574.19988.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=708bp|location=Sequence derived from alignment at M-pyrifera_M_contig8574:7435..8142- (Macrocystis pyrifera P11B4 male)
ATGCGTGTGCACCAATGTGACGATTCCCATACAGGTTTTTACGCGGGATA
CCTGTCATCGGCCTTTATGGTCGGGCGCTTCGGGAGCTCATATTTCTGGG
GCCGCTTCGCGGACCGCTACGGTCGACTGCCGGTTGTGTACATCGGGCTG
TGTTCCATAGCGTTCCTGTCGGTCGCGTTCGGTTTGTCGGCCACATTTCT
TTGGGCTGTTGCTTGCCGGTGAGGGGTGCCGTATGTATGCTTCAGGAGGG
TTTACCTCGTGGTGTCCGTGGATTTTGACCCCGGTAGGCCGAGCATCCAT
ATATCTCCCATTCTCTGATCCACCATCGTCCGATAGCACAGGTCGCACTG
CAGCGTAACAGAATGCTGTGTCTGCAATGTCATCGATCATTCTGCAAGGC
ATCAATAAAAAATGCAATATATCCCGACTTCCCACCGTCGTCGGCTAGTC
ATCCAAACACACGTTTATAGTCGTCCGCCCCCAAAACTGTACGTGATGTA
ATATTGATAGCACTTTTAGTAGACACATGCATGCAATATCGCACAATATA
TCTGTTCATCGATCGCTCCCTGCGGACGGGTTCCTCTACCGTTGCGTCGA
TGTAGGTTTCTCCTTGGAGTAATGAACGGCCTGGAGGGCGTATTGAAGAC
TATGATCTCCGAGGTTTGCGGAAGAGAGCATGAGGTGGTCGGCATGAGCT
TTATCACA
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig8574:7435..8142-

>mRNA_M-pyrifera_M_contig8574.19988.1 ID=mRNA_M-pyrifera_M_contig8574.19988.1|Name=mRNA_M-pyrifera_M_contig8574.19988.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=642bp|location=Sequence derived from alignment at M-pyrifera_M_contig8574:7435..8142- (Macrocystis pyrifera P11B4 male)
ATGCGTGTGCACCAATGTGACGATTCCCATACAGGTTTTTACGCGGGATA
CCTGTCATCGGCCTTTATGGTCGGGCGCTTCGGGAGCTCATATTTCTGGG
GCCGCTTCGCGGACCGCTACGGTCGACTGCCGGTTGTGTACATCGGGCTG
TGTTCCATAGCGTTCCTGTCGGTCGCGTTCGGTTTGTCGGCCACATTTCT
TTGGGCTGTTGCTTGCCGATGCGTGTGCACCAATGTGACGATTCCCATAC
AGGTTTTTACGCGGGATACCTGTCATCGGCCTTTATGGTCGGGCGCTTCG
GGAGCTCATATTTCTGGGGCCGCTTCGCGGACCGCTACGGTCGACTGCCG
GTTGTGTACATCGGGCTGTGTTCCATAGCGTTCCTGTCGGTCGCGTTCGG
TTTGTCGGCCACATTTCTTTGGGCTGTTGCTTGCCGGTTTCTCCTTGGAG
TAATGAACGGCCTGGAGGGCGTATTGAAGACTATGATCTCCGAGGTTTGC
GGAAGAGAGCATGAGGTGGTCGGCATGAGCTTTATCACAGTTTCTCCTTG
GAGTAATGAACGGCCTGGAGGGCGTATTGAAGACTATGATCTCCGAGGTT
TGCGGAAGAGAGCATGAGGTGGTCGGCATGAGCTTTATCACA
back to top