mRNA_M-pyrifera_M_contig85725.19984.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig85725.19984.1
Unique NamemRNA_M-pyrifera_M_contig85725.19984.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig85725.19984.1 vs. uniprot
Match: A0A8J5XCJ1_DIALT (GYF domain-containing protein n=2 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J5XCJ1_DIALT)

HSP 1 Score: 60.8 bits (146), Expect = 1.880e-8
Identity = 23/39 (58.97%), Postives = 29/39 (74.36%), Query Frame = 1
Query:  166 WVYLDDQGVLQGPFDSKAMHSWFINGYLPPTLEIKRSDQ 282
            W Y+D QGV  GP+ S+ MH WF  GYLPPTL++K SD+
Sbjct:  208 WRYVDPQGVTHGPYSSQQMHEWFTAGYLPPTLQVKSSDE 246          
BLAST of mRNA_M-pyrifera_M_contig85725.19984.1 vs. uniprot
Match: A0A2J6TI98_9HELO (GYF domain-containing protein n=1 Tax=Hyaloscypha bicolor E TaxID=1095630 RepID=A0A2J6TI98_9HELO)

HSP 1 Score: 60.8 bits (146), Expect = 1.900e-8
Identity = 35/117 (29.91%), Postives = 56/117 (47.86%), Query Frame = 1
Query:    4 QVPFEESAAGPQRSVTQ-SSGTLGVGWRTQSDSSHSTAVEKSPAVEETTNFL--EQQWVYLDDQGVLQGPFDSKAMHSWFINGYLPPTLEIKRSDQSNYSALGSLVE---GKQSPFL 336
            Q PF  S   P ++ T  S  T       QS +S  +A  + P  ++    +    +WVYLD QG++QGP+    MH W+   +  P L +K+ + + +  LG L+      + PFL
Sbjct:  669 QGPFSTSDNAPGQTATSFSQATTAQSNYQQSQASSDSAANQLPTAQQRVMVMPDRMRWVYLDPQGMVQGPWSGLEMHDWYKASFFTPDLSVKKLEDAEFEPLGQLIRRIGNSREPFL 785          
BLAST of mRNA_M-pyrifera_M_contig85725.19984.1 vs. uniprot
Match: L8GDX6_ACACA (GYF domain containing protein n=1 Tax=Acanthamoeba castellanii str. Neff TaxID=1257118 RepID=L8GDX6_ACACA)

HSP 1 Score: 58.9 bits (141), Expect = 8.990e-8
Identity = 28/81 (34.57%), Postives = 46/81 (56.79%), Query Frame = 1
Query:   91 SDSSHSTAVEKSPAVEETTNFLEQQWVYLDDQGVLQGPFDSKAMHSWFINGYLPPTLEIKRSDQSNYSALGSLVEGKQSPF 333
            SDS  + + +++P V          W+Y D Q +++GPF +K MH W++ G+ PP+L +K+    ++ AL S  EG   PF
Sbjct:  252 SDSDEAASEDEAPGV---------GWLYRDPQNIVRGPFSNKEMHEWYLGGFFPPSLPVKKEGDEDFKAL-STYEGN--PF 320          
BLAST of mRNA_M-pyrifera_M_contig85725.19984.1 vs. uniprot
Match: A0A8K0LI14_9PEZI (Uncharacterized protein n=1 Tax=Chaetomium sp. MPI-SDFR-AT-0129 TaxID=2823209 RepID=A0A8K0LI14_9PEZI)

HSP 1 Score: 58.5 bits (140), Expect = 1.230e-7
Identity = 24/61 (39.34%), Postives = 36/61 (59.02%), Query Frame = 1
Query:  163 QWVYLDDQGVLQGPFDSKAMHSWFINGYLPPTLEIKRSDQSNYSALGSLVE---GKQSPFL 336
            +WVYLD QGV+QGPF    M+ W+   +  P L +KR + +++  LG L+      + PFL
Sbjct:  695 RWVYLDPQGVMQGPFSGLEMNDWYKANFFTPDLRVKRLEDADFEPLGQLIRRIGNSREPFL 755          
BLAST of mRNA_M-pyrifera_M_contig85725.19984.1 vs. uniprot
Match: A0A6A3MBP9_9STRA (GYF domain-containing protein n=4 Tax=Phytophthora TaxID=4783 RepID=A0A6A3MBP9_9STRA)

HSP 1 Score: 57.8 bits (138), Expect = 2.260e-7
Identity = 28/74 (37.84%), Postives = 37/74 (50.00%), Query Frame = 1
Query:  112 AVEKSPAVEETTNFLEQQWVYLDDQGVLQGPFDSKAMHSWFINGYLPPTLEIKRSDQSNYSALGSLVEGKQSPF 333
            A E+ P +      +E +W YLD QG+ QGPF +  M  WF  GY  P L I+   + N+  L S     Q PF
Sbjct:  377 ADERFPGLSPLRLEVEDEWFYLDPQGLQQGPFKTAEMREWFEAGYFKPHLPIRFGREGNFGPLASAFGPGQMPF 450          
BLAST of mRNA_M-pyrifera_M_contig85725.19984.1 vs. uniprot
Match: A0A2T9Z1E7_9FUNG (GYF domain-containing protein n=3 Tax=Harpellales TaxID=61421 RepID=A0A2T9Z1E7_9FUNG)

HSP 1 Score: 57.0 bits (136), Expect = 4.140e-7
Identity = 26/71 (36.62%), Postives = 38/71 (53.52%), Query Frame = 1
Query:  136 EETTNFLEQQ-WVYLDDQGVLQGPFDSKAMHSWFINGYLPPTLEIKRSDQSNYSALGSL---VEGKQSPFL 336
            E   + LE+  W Y D +G LQGPF   +M  WFI GY P  L ++R D + +  L S+   ++    PF+
Sbjct:  213 ESLVSLLEEPVWYYKDPKGALQGPFSGLSMQEWFIAGYFPEDLHVRRKDWNEFETLASITMQLQNTAEPFI 283          
BLAST of mRNA_M-pyrifera_M_contig85725.19984.1 vs. uniprot
Match: G4ZBQ2_PHYSP (GYF domain-containing protein n=1 Tax=Phytophthora sojae (strain P6497) TaxID=1094619 RepID=G4ZBQ2_PHYSP)

HSP 1 Score: 57.0 bits (136), Expect = 4.190e-7
Identity = 25/60 (41.67%), Postives = 33/60 (55.00%), Query Frame = 1
Query:  154 LEQQWVYLDDQGVLQGPFDSKAMHSWFINGYLPPTLEIKRSDQSNYSALGSLVEGKQSPF 333
            +E +W YLD QG+ QGPF +  M  WF  GY  P L I+   + N+ AL +     Q PF
Sbjct:  397 VEDEWFYLDPQGLQQGPFKTAEMREWFEAGYFKPHLPIRFGREGNFGALANQFGPGQMPF 456          
BLAST of mRNA_M-pyrifera_M_contig85725.19984.1 vs. uniprot
Match: A0A662WWB2_9STRA (GYF domain-containing protein (Fragment) n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662WWB2_9STRA)

HSP 1 Score: 55.1 bits (131), Expect = 1.950e-6
Identity = 25/60 (41.67%), Postives = 33/60 (55.00%), Query Frame = 1
Query:  154 LEQQWVYLDDQGVLQGPFDSKAMHSWFINGYLPPTLEIKRSDQSNYSALGSLVEGKQSPF 333
            +E +W YLD QG+ QGPF +  M  WF  GY  P L I+   +  ++AL S     Q PF
Sbjct:  247 VEDEWFYLDPQGLQQGPFKTAEMREWFEAGYFKPHLPIRFGREGVFTALASQFVHGQMPF 306          
BLAST of mRNA_M-pyrifera_M_contig85725.19984.1 vs. uniprot
Match: A0A0M0JGE7_9EUKA (Uncharacterized protein n=1 Tax=Chrysochromulina tobinii TaxID=1460289 RepID=A0A0M0JGE7_9EUKA)

HSP 1 Score: 54.3 bits (129), Expect = 3.560e-6
Identity = 23/50 (46.00%), Postives = 32/50 (64.00%), Query Frame = 1
Query:  118 EKSPAVEETTNFLEQQWVYLDDQGVLQGPFDSKAMHSWFINGYLPPTLEI 267
            E+S A  +  N  E +WV++DD+G +QGPF +  MH W   GYL PT E+
Sbjct:   73 EQSKAEIDEWNVEEGEWVFIDDEGNVQGPFGTAEMHEWVRQGYLEPTREV 122          
BLAST of mRNA_M-pyrifera_M_contig85725.19984.1 vs. uniprot
Match: G3JKS0_CORMM (GYF domain protein n=2 Tax=Cordyceps militaris TaxID=73501 RepID=G3JKS0_CORMM)

HSP 1 Score: 54.3 bits (129), Expect = 3.740e-6
Identity = 22/61 (36.07%), Postives = 34/61 (55.74%), Query Frame = 1
Query:  163 QWVYLDDQGVLQGPFDSKAMHSWFINGYLPPTLEIKRSDQSNYSALGSLVE---GKQSPFL 336
            +WVYLD QG++QGPF    M+ W+   +  P L +K+ +   +  LG L+      + PFL
Sbjct:  694 RWVYLDPQGLVQGPFTGLEMNDWYKANFFTPDLRVKKVEDPEFEPLGQLIRRIGNSREPFL 754          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig85725.19984.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 21
Match NameE-valueIdentityDescription
A0A8J5XCJ1_DIALT1.880e-858.97GYF domain-containing protein n=2 Tax=Diacronema l... [more]
A0A2J6TI98_9HELO1.900e-829.91GYF domain-containing protein n=1 Tax=Hyaloscypha ... [more]
L8GDX6_ACACA8.990e-834.57GYF domain containing protein n=1 Tax=Acanthamoeba... [more]
A0A8K0LI14_9PEZI1.230e-739.34Uncharacterized protein n=1 Tax=Chaetomium sp. MPI... [more]
A0A6A3MBP9_9STRA2.260e-737.84GYF domain-containing protein n=4 Tax=Phytophthora... [more]
A0A2T9Z1E7_9FUNG4.140e-736.62GYF domain-containing protein n=3 Tax=Harpellales ... [more]
G4ZBQ2_PHYSP4.190e-741.67GYF domain-containing protein n=1 Tax=Phytophthora... [more]
A0A662WWB2_9STRA1.950e-641.67GYF domain-containing protein (Fragment) n=1 Tax=N... [more]
A0A0M0JGE7_9EUKA3.560e-646.00Uncharacterized protein n=1 Tax=Chrysochromulina t... [more]
G3JKS0_CORMM3.740e-636.07GYF domain protein n=2 Tax=Cordyceps militaris Tax... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig85725contigM-pyrifera_M_contig85725:225..560 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeFungi
Seed ortholog score63.2
Seed ortholog evalue9.2e-08
Seed eggNOG ortholog38033.XP_001224438.1
Preferred nameSMY2
KEGG koko:K18730
Hectar predicted targeting categoryother localisation
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005783,GO:0005789,GO:0005829,GO:0006810,GO:0006888,GO:0006996,GO:0006997,GO:0008104,GO:0008150,GO:0009987,GO:0012505,GO:0016020,GO:0016043,GO:0016192,GO:0019898,GO:0031081,GO:0031503,GO:0031984,GO:0033036,GO:0034613,GO:0034629,GO:0042175,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044425,GO:0044432,GO:0044444,GO:0044446,GO:0044464,GO:0046907,GO:0048193,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0051664,GO:0051668,GO:0070727,GO:0071840,GO:0098827
EggNOG free text desc.GYF domain
EggNOG OGs211W3@147550,38UDY@33154,3H9G3@35718,3NUVE@4751,3QNVZ@4890,3U894@5139,KOG1862@1,KOG1862@2759
COG Functional cat.S
Best tax levelChaetomiaceae
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03019
Exons1
Model size336
Cds size336
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816767.2846806-CDS-M-pyrifera_M_contig85725:224..5601622816767.2846806-CDS-M-pyrifera_M_contig85725:224..560Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig85725 225..560 -
1692278166.3849723-CDS-M-pyrifera_M_contig85725:224..5601692278166.3849723-CDS-M-pyrifera_M_contig85725:224..560Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig85725 225..560 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig85725.19984.1prot_M-pyrifera_M_contig85725.19984.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig85725 225..560 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig85725.19984.1

>prot_M-pyrifera_M_contig85725.19984.1 ID=prot_M-pyrifera_M_contig85725.19984.1|Name=mRNA_M-pyrifera_M_contig85725.19984.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=112bp
SQVPFEESAAGPQRSVTQSSGTLGVGWRTQSDSSHSTAVEKSPAVEETTN
FLEQQWVYLDDQGVLQGPFDSKAMHSWFINGYLPPTLEIKRSDQSNYSAL
GSLVEGKQSPFL
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mRNA from alignment at M-pyrifera_M_contig85725:225..560-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig85725.19984.1 ID=mRNA_M-pyrifera_M_contig85725.19984.1|Name=mRNA_M-pyrifera_M_contig85725.19984.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=336bp|location=Sequence derived from alignment at M-pyrifera_M_contig85725:225..560- (Macrocystis pyrifera P11B4 male)
TCGCAGGTGCCCTTCGAGGAGTCGGCTGCAGGGCCGCAGCGAAGTGTCAC GCAGTCCAGTGGGACGCTGGGGGTCGGCTGGCGCACGCAGAGCGACAGCT CCCACAGCACAGCAGTGGAGAAGTCGCCGGCGGTGGAGGAGACGACGAAC TTTCTGGAGCAGCAGTGGGTCTACCTGGACGACCAAGGAGTCTTGCAAGG GCCCTTCGACAGTAAGGCTATGCACAGCTGGTTTATCAATGGCTACCTCC CGCCCACGCTCGAGATCAAGCGATCAGACCAGAGCAATTACTCTGCGCTA GGCTCGCTCGTGGAAGGGAAGCAGTCCCCGTTCCTG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig85725:225..560-

>mRNA_M-pyrifera_M_contig85725.19984.1 ID=mRNA_M-pyrifera_M_contig85725.19984.1|Name=mRNA_M-pyrifera_M_contig85725.19984.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=672bp|location=Sequence derived from alignment at M-pyrifera_M_contig85725:225..560- (Macrocystis pyrifera P11B4 male)
TCGCAGGTGCCCTTCGAGGAGTCGGCTGCAGGGCCGCAGCGAAGTGTCAC
GCAGTCCAGTGGGACGCTGGGGGTCGGCTGGCGCACGCAGAGCGACAGCT
CCCACAGCACAGCAGTGGAGAAGTCGCCGGCGGTGGAGGAGACGACGAAC
TTTCTGGAGCAGCAGTGGGTCTACCTGGACGACCAAGGAGTCTTGCAAGG
GCCCTTCGACAGTAAGGCTATGCACAGCTGGTTTATCAATGGCTACCTCC
CGCCCACGCTCGAGATCAAGCGATCAGACCAGAGCAATTACTCTGCGCTA
GGCTCGCTCGTGGAAGGGAAGCAGTCCCCGTTCCTGTCGCAGGTGCCCTT
CGAGGAGTCGGCTGCAGGGCCGCAGCGAAGTGTCACGCAGTCCAGTGGGA
CGCTGGGGGTCGGCTGGCGCACGCAGAGCGACAGCTCCCACAGCACAGCA
GTGGAGAAGTCGCCGGCGGTGGAGGAGACGACGAACTTTCTGGAGCAGCA
GTGGGTCTACCTGGACGACCAAGGAGTCTTGCAAGGGCCCTTCGACAGTA
AGGCTATGCACAGCTGGTTTATCAATGGCTACCTCCCGCCCACGCTCGAG
ATCAAGCGATCAGACCAGAGCAATTACTCTGCGCTAGGCTCGCTCGTGGA
AGGGAAGCAGTCCCCGTTCCTG
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