prot_M-pyrifera_M_contig85713.19982.1 (polypeptide) Macrocystis pyrifera P11B4 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_M-pyrifera_M_contig85713.19982.1
Unique Nameprot_M-pyrifera_M_contig85713.19982.1
Typepolypeptide
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Sequence length71
Homology
[Close]
BLAST of mRNA_M-pyrifera_M_contig85713.19982.1 vs. uniprot
Match: UPI000E6F63CB (uncharacterized protein LOC113285456 isoform X2 n=1 Tax=Papaver somniferum TaxID=3469 RepID=UPI000E6F63CB)

HSP 1 Score: 75.9 bits (185), Expect = 4.480e-16
Identity = 37/65 (56.92%), Postives = 45/65 (69.23%), Query Frame = 0 
Query:    1 MTDVFGNYVVQKLFDNGSSAQREALASFLVGHAVQLSLQMYGCRVVQKALEYASIDTLIALVSEF 65
            MTDVFGNYV+QK F++ S+ QR+ L   +VGH   LSLQMYGCRV+QKALE   +D    L   F
Sbjct:    1 MTDVFGNYVIQKFFEHVSAEQRKQLPKQVVGHIFPLSLQMYGCRVIQKALEVIKLDQKTQLFGMF 65
[Close]
BLAST of mRNA_M-pyrifera_M_contig85713.19982.1 vs. uniprot
Match: A0A6A3CJZ6_HIBSY (Pumilio-like protein 1 n=4 Tax=Hibiscus syriacus TaxID=106335 RepID=A0A6A3CJZ6_HIBSY)

HSP 1 Score: 79.7 bits (195), Expect = 8.950e-16
Identity = 40/71 (56.34%), Postives = 51/71 (71.83%), Query Frame = 0 
Query:    1 MTDVFGNYVVQKLFDNGSSAQREALASFLVGHAVQLSLQMYGCRVVQKALEYASIDTLIALVSEFGGQVSR 71
            MTDVFGNYV+QK F++G  AQR  LA  L+G  + LSLQMYGCRV+QKA+    +D  I++V+E  G V R
Sbjct:  748 MTDVFGNYVIQKFFEHGLPAQRRELACKLLGQVLTLSLQMYGCRVIQKAIG-CRLDQKISMVNELDGSVMR 817
[Close]
BLAST of mRNA_M-pyrifera_M_contig85713.19982.1 vs. uniprot
Match: A0A7R9Z8F3_9CHLO (Hypothetical protein n=1 Tax=Chlamydomonas euryale TaxID=1486919 RepID=A0A7R9Z8F3_9CHLO)

HSP 1 Score: 79.3 bits (194), Expect = 1.210e-15
Identity = 41/72 (56.94%), Postives = 50/72 (69.44%), Query Frame = 0 
Query:    1 MTDVFGNYVVQKLFDNGSSAQREALASF-LVGHAVQLSLQMYGCRVVQKALEYASIDTLIALVSEFGGQVSR 71
            M+DVFGNYVVQKL ++GS   R AL    L G  +QLS+QMYGCRVVQKALE   +D   A+V+E  G + R
Sbjct:  224 MSDVFGNYVVQKLLEHGSDEHRSALVEKGLAGGVLQLSMQMYGCRVVQKALETLPVDGQCAIVAELDGHIMR 295
[Close]
BLAST of mRNA_M-pyrifera_M_contig85713.19982.1 vs. uniprot
Match: UPI000C1CDF71 (pumilio homolog 4-like isoform X1 n=6 Tax=Olea europaea var. sylvestris TaxID=158386 RepID=UPI000C1CDF71)

HSP 1 Score: 79.3 bits (194), Expect = 1.220e-15
Identity = 37/65 (56.92%), Postives = 51/65 (78.46%), Query Frame = 0 
Query:    1 MTDVFGNYVVQK-LFDNGSSAQREALASFLVGHAVQLSLQMYGCRVVQKALEYASIDTLIALVSE 64
            MTDVFGNYV+QK  F++G+ +Q++ LAS L+GH + LSLQMYGCRV+QKALE   ++    +V+E
Sbjct:  796 MTDVFGNYVIQKQFFEHGTESQQKELASQLIGHVLHLSLQMYGCRVIQKALEVVDVELQTKMVAE 860
[Close]
BLAST of mRNA_M-pyrifera_M_contig85713.19982.1 vs. uniprot
Match: UPI000E7037C2 (uncharacterized protein LOC113285456 isoform X1 n=1 Tax=Papaver somniferum TaxID=3469 RepID=UPI000E7037C2)

HSP 1 Score: 75.9 bits (185), Expect = 1.360e-15
Identity = 37/65 (56.92%), Postives = 45/65 (69.23%), Query Frame = 0 
Query:    1 MTDVFGNYVVQKLFDNGSSAQREALASFLVGHAVQLSLQMYGCRVVQKALEYASIDTLIALVSEF 65
            MTDVFGNYV+QK F++ S+ QR+ L   +VGH   LSLQMYGCRV+QKALE   +D    L   F
Sbjct:    1 MTDVFGNYVIQKFFEHVSAEQRKQLPKQVVGHIFPLSLQMYGCRVIQKALEVIKLDQKTQLFGMF 65
[Close]
BLAST of mRNA_M-pyrifera_M_contig85713.19982.1 vs. uniprot
Match: A0A1E4TWH9_PACTA (PUM-HD domain-containing protein n=1 Tax=Pachysolen tannophilus NRRL Y-2460 TaxID=669874 RepID=A0A1E4TWH9_PACTA)

HSP 1 Score: 79.0 bits (193), Expect = 1.670e-15
Identity = 36/64 (56.25%), Postives = 47/64 (73.44%), Query Frame = 0 
Query:    1 MTDVFGNYVVQKLFDNGSSAQREALASFLVGHAVQLSLQMYGCRVVQKALEYASIDTLIALVSE 64
            MTDVFGNYV+QK F+ GS  Q++ L   + GH + LSLQMYGCRVVQ+A+E+ +ID    L+ E
Sbjct:  677 MTDVFGNYVIQKYFEFGSEVQKKILLEAMEGHLLDLSLQMYGCRVVQRAIEFINIDEQCELIKE 740
[Close]
BLAST of mRNA_M-pyrifera_M_contig85713.19982.1 vs. uniprot
Match: A0A1Y2HSJ2_9FUNG (Armadillo-type protein (Fragment) n=1 Tax=Catenaria anguillulae PL171 TaxID=765915 RepID=A0A1Y2HSJ2_9FUNG)

HSP 1 Score: 77.8 bits (190), Expect = 2.630e-15
Identity = 39/65 (60.00%), Postives = 47/65 (72.31%), Query Frame = 0 
Query:    1 MTDVFGNYVVQKLFDNGSSAQREALASFLV-GHAVQLSLQMYGCRVVQKALEYASIDTLIALVSE 64
            MTDVFGNYV+QK F++GS   R  L++  + GH + LSLQMYGCRVVQKALEY   D   A+V E
Sbjct:   69 MTDVFGNYVIQKFFEHGSVKHRHVLSTVAMKGHILTLSLQMYGCRVVQKALEYVERDVQTAIVRE 133
[Close]
BLAST of mRNA_M-pyrifera_M_contig85713.19982.1 vs. uniprot
Match: A0A4W5MSR9_9TELE (Pumilio RNA-binding family member 2 n=1 Tax=Hucho hucho TaxID=62062 RepID=A0A4W5MSR9_9TELE)

HSP 1 Score: 77.8 bits (190), Expect = 4.250e-15
Identity = 40/73 (54.79%), Postives = 52/73 (71.23%), Query Frame = 0 
Query:    1 MTDVFGNYVVQKLFDNGSSAQREALASFLVGHAVQLSLQMYGCRVVQKALEYASIDTLIA--LVSEFGGQVSR 71
            MTDVFGNYV+QK F+ GS+ Q+ ALA+ + GH + L+LQMYGCRV+QKALE  S D  +   +V E  G V +
Sbjct:  670 MTDVFGNYVIQKFFEFGSADQKLALATRIRGHVLPLALQMYGCRVIQKALESISSDQQVISDIVRELDGHVLK 742
[Close]
BLAST of mRNA_M-pyrifera_M_contig85713.19982.1 vs. uniprot
Match: A0A8C7HPQ2_ONCKI (Pumilio RNA binding family member 2 n=1 Tax=Oncorhynchus kisutch TaxID=8019 RepID=A0A8C7HPQ2_ONCKI)

HSP 1 Score: 77.8 bits (190), Expect = 4.250e-15
Identity = 40/73 (54.79%), Postives = 52/73 (71.23%), Query Frame = 0 
Query:    1 MTDVFGNYVVQKLFDNGSSAQREALASFLVGHAVQLSLQMYGCRVVQKALEYASIDTLIA--LVSEFGGQVSR 71
            MTDVFGNYV+QK F+ GS+ Q+ ALA+ + GH + L+LQMYGCRV+QKALE  S D  +   +V E  G V +
Sbjct:  676 MTDVFGNYVIQKFFEFGSADQKLALATRIRGHVLPLALQMYGCRVIQKALESISSDQQVISDIVRELDGHVLK 748
[Close]
BLAST of mRNA_M-pyrifera_M_contig85713.19982.1 vs. uniprot
Match: A0A4W5MSA4_9TELE (Pumilio RNA-binding family member 2 n=1 Tax=Hucho hucho TaxID=62062 RepID=A0A4W5MSA4_9TELE)

HSP 1 Score: 77.8 bits (190), Expect = 4.250e-15
Identity = 40/73 (54.79%), Postives = 52/73 (71.23%), Query Frame = 0 
Query:    1 MTDVFGNYVVQKLFDNGSSAQREALASFLVGHAVQLSLQMYGCRVVQKALEYASIDTLIA--LVSEFGGQVSR 71
            MTDVFGNYV+QK F+ GS+ Q+ ALA+ + GH + L+LQMYGCRV+QKALE  S D  +   +V E  G V +
Sbjct:  694 MTDVFGNYVIQKFFEFGSADQKLALATRIRGHVLPLALQMYGCRVIQKALESISSDQQVISDIVRELDGHVLK 766
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig85713.19982.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
UPI000E6F63CB4.480e-1656.92uncharacterized protein LOC113285456 isoform X2 n=... [more]
A0A6A3CJZ6_HIBSY8.950e-1656.34Pumilio-like protein 1 n=4 Tax=Hibiscus syriacus T... [more]
A0A7R9Z8F3_9CHLO1.210e-1556.94Hypothetical protein n=1 Tax=Chlamydomonas euryale... [more]
UPI000C1CDF711.220e-1556.92pumilio homolog 4-like isoform X1 n=6 Tax=Olea eur... [more]
UPI000E7037C21.360e-1556.92uncharacterized protein LOC113285456 isoform X1 n=... [more]
A0A1E4TWH9_PACTA1.670e-1556.25PUM-HD domain-containing protein n=1 Tax=Pachysole... [more]
A0A1Y2HSJ2_9FUNG2.630e-1560.00Armadillo-type protein (Fragment) n=1 Tax=Catenari... [more]
A0A4W5MSR9_9TELE4.250e-1554.79Pumilio RNA-binding family member 2 n=1 Tax=Hucho ... [more]
A0A8C7HPQ2_ONCKI4.250e-1554.79Pumilio RNA binding family member 2 n=1 Tax=Oncorh... [more]
A0A4W5MSA4_9TELE4.250e-1554.79Pumilio RNA-binding family member 2 n=1 Tax=Hucho ... [more]

Pages

back to top
InterPro
Analysis Name: InterProScan on OGS1.0 of Macrocystis pyrifera male
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001313Pumilio RNA-binding repeatSMARTSM00025pum_5coord: 28..63
e-value: 4.9E-6
score: 36.1
coord: 1..27
e-value: 15.0
score: 11.4
IPR001313Pumilio RNA-binding repeatPFAMPF00806PUFcoord: 29..54
e-value: 2.1E-7
score: 30.3
coord: 1..22
e-value: 9.2E-6
score: 25.1
IPR001313Pumilio RNA-binding repeatPROSITEPS50302PUMcoord: 27..63
score: 9.784
IPR001313Pumilio RNA-binding repeatPROSITEPS50302PUMcoord: 1..25
score: 7.241
IPR011989Armadillo-like helicalGENE3D1.25.10.10coord: 1..71
e-value: 3.3E-23
score: 84.1
NoneNo IPR availablePANTHERPTHR12537:SF119PUMILIO HOMOLOG 6, CHLOROPLASTICcoord: 1..71
NoneNo IPR availablePANTHERPTHR12537RNA BINDING PROTEIN PUMILIO-RELATEDcoord: 1..71
IPR033133Pumilio homology domainPROSITEPS50303PUM_HDcoord: 1..71
score: 25.962
IPR016024Armadillo-type foldSUPERFAMILY48371ARM repeatcoord: 1..69

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig85713contigM-pyrifera_M_contig85713:402..614 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Macrocystis pyrifera male2022-09-29
Diamond blastp: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-16
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig85713.19982.1mRNA_M-pyrifera_M_contig85713.19982.1Macrocystis pyrifera P11B4 malemRNAM-pyrifera_M_contig85713 393..614 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_M-pyrifera_M_contig85713.19982.1 ID=prot_M-pyrifera_M_contig85713.19982.1|Name=mRNA_M-pyrifera_M_contig85713.19982.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=71bp
MTDVFGNYVVQKLFDNGSSAQREALASFLVGHAVQLSLQMYGCRVVQKAL
EYASIDTLIALVSEFGGQVSR
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001313Pumilio_RNA-bd_rpt
IPR011989ARM-like
IPR033133PUM-HD
IPR016024ARM-type_fold