mRNA_M-pyrifera_M_contig85713.19982.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig85713.19982.1
Unique NamemRNA_M-pyrifera_M_contig85713.19982.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig85713.19982.1 vs. uniprot
Match: UPI000C1CDF71 (pumilio homolog 4-like isoform X1 n=6 Tax=Olea europaea var. sylvestris TaxID=158386 RepID=UPI000C1CDF71)

HSP 1 Score: 85.1 bits (209), Expect = 1.290e-17
Identity = 40/68 (58.82%), Postives = 54/68 (79.41%), Query Frame = 1 
Query:    1 PSLMTDVFGNYVVQK-LFDNGSSAQREALASFLVGHAVQLSLQMYGCRVVQKALEYASIDTLIALVSE 201
            PSLMTDVFGNYV+QK  F++G+ +Q++ LAS L+GH + LSLQMYGCRV+QKALE   ++    +V+E
Sbjct:  793 PSLMTDVFGNYVIQKQFFEHGTESQQKELASQLIGHVLHLSLQMYGCRVIQKALEVVDVELQTKMVAE 860
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BLAST of mRNA_M-pyrifera_M_contig85713.19982.1 vs. uniprot
Match: A0A6A3CJZ6_HIBSY (Pumilio-like protein 1 n=4 Tax=Hibiscus syriacus TaxID=106335 RepID=A0A6A3CJZ6_HIBSY)

HSP 1 Score: 81.6 bits (200), Expect = 2.130e-16
Identity = 41/73 (56.16%), Postives = 53/73 (72.60%), Query Frame = 1 
Query:    4 SLMTDVFGNYVVQKLFDNGSSAQREALASFLVGHAVQLSLQMYGCRVVQKALEYASIDTLIALVSEFGGQVSR 222
            +LMTDVFGNYV+QK F++G  AQR  LA  L+G  + LSLQMYGCRV+QKA+    +D  I++V+E  G V R
Sbjct:  746 ALMTDVFGNYVIQKFFEHGLPAQRRELACKLLGQVLTLSLQMYGCRVIQKAIG-CRLDQKISMVNELDGSVMR 817
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BLAST of mRNA_M-pyrifera_M_contig85713.19982.1 vs. uniprot
Match: A0A7R9Z8F3_9CHLO (Hypothetical protein n=1 Tax=Chlamydomonas euryale TaxID=1486919 RepID=A0A7R9Z8F3_9CHLO)

HSP 1 Score: 80.9 bits (198), Expect = 3.920e-16
Identity = 42/73 (57.53%), Postives = 51/73 (69.86%), Query Frame = 1 
Query:    7 LMTDVFGNYVVQKLFDNGSSAQREALASF-LVGHAVQLSLQMYGCRVVQKALEYASIDTLIALVSEFGGQVSR 222
            LM+DVFGNYVVQKL ++GS   R AL    L G  +QLS+QMYGCRVVQKALE   +D   A+V+E  G + R
Sbjct:  223 LMSDVFGNYVVQKLLEHGSDEHRSALVEKGLAGGVLQLSMQMYGCRVVQKALETLPVDGQCAIVAELDGHIMR 295
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BLAST of mRNA_M-pyrifera_M_contig85713.19982.1 vs. uniprot
Match: UPI000E6F63CB (uncharacterized protein LOC113285456 isoform X2 n=1 Tax=Papaver somniferum TaxID=3469 RepID=UPI000E6F63CB)

HSP 1 Score: 75.9 bits (185), Expect = 5.040e-16
Identity = 37/65 (56.92%), Postives = 45/65 (69.23%), Query Frame = 1 
Query:   10 MTDVFGNYVVQKLFDNGSSAQREALASFLVGHAVQLSLQMYGCRVVQKALEYASIDTLIALVSEF 204
            MTDVFGNYV+QK F++ S+ QR+ L   +VGH   LSLQMYGCRV+QKALE   +D    L   F
Sbjct:    1 MTDVFGNYVIQKFFEHVSAEQRKQLPKQVVGHIFPLSLQMYGCRVIQKALEVIKLDQKTQLFGMF 65
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BLAST of mRNA_M-pyrifera_M_contig85713.19982.1 vs. uniprot
Match: A0A1E4TWH9_PACTA (PUM-HD domain-containing protein n=1 Tax=Pachysolen tannophilus NRRL Y-2460 TaxID=669874 RepID=A0A1E4TWH9_PACTA)

HSP 1 Score: 80.5 bits (197), Expect = 5.430e-16
Identity = 37/65 (56.92%), Postives = 48/65 (73.85%), Query Frame = 1 
Query:    7 LMTDVFGNYVVQKLFDNGSSAQREALASFLVGHAVQLSLQMYGCRVVQKALEYASIDTLIALVSE 201
            LMTDVFGNYV+QK F+ GS  Q++ L   + GH + LSLQMYGCRVVQ+A+E+ +ID    L+ E
Sbjct:  676 LMTDVFGNYVIQKYFEFGSEVQKKILLEAMEGHLLDLSLQMYGCRVVQRAIEFINIDEQCELIKE 740
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BLAST of mRNA_M-pyrifera_M_contig85713.19982.1 vs. uniprot
Match: A0A1Y2HSJ2_9FUNG (Armadillo-type protein (Fragment) n=1 Tax=Catenaria anguillulae PL171 TaxID=765915 RepID=A0A1Y2HSJ2_9FUNG)

HSP 1 Score: 79.3 bits (194), Expect = 8.090e-16
Identity = 40/66 (60.61%), Postives = 48/66 (72.73%), Query Frame = 1 
Query:    7 LMTDVFGNYVVQKLFDNGSSAQREALASFLV-GHAVQLSLQMYGCRVVQKALEYASIDTLIALVSE 201
            LMTDVFGNYV+QK F++GS   R  L++  + GH + LSLQMYGCRVVQKALEY   D   A+V E
Sbjct:   68 LMTDVFGNYVIQKFFEHGSVKHRHVLSTVAMKGHILTLSLQMYGCRVVQKALEYVERDVQTAIVRE 133
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BLAST of mRNA_M-pyrifera_M_contig85713.19982.1 vs. uniprot
Match: A0A4W5MSR9_9TELE (Pumilio RNA-binding family member 2 n=1 Tax=Hucho hucho TaxID=62062 RepID=A0A4W5MSR9_9TELE)

HSP 1 Score: 79.3 bits (194), Expect = 1.380e-15
Identity = 41/74 (55.41%), Postives = 53/74 (71.62%), Query Frame = 1 
Query:    7 LMTDVFGNYVVQKLFDNGSSAQREALASFLVGHAVQLSLQMYGCRVVQKALEYASIDTLIA--LVSEFGGQVSR 222
            LMTDVFGNYV+QK F+ GS+ Q+ ALA+ + GH + L+LQMYGCRV+QKALE  S D  +   +V E  G V +
Sbjct:  669 LMTDVFGNYVIQKFFEFGSADQKLALATRIRGHVLPLALQMYGCRVIQKALESISSDQQVISDIVRELDGHVLK 742
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BLAST of mRNA_M-pyrifera_M_contig85713.19982.1 vs. uniprot
Match: A0A8C7HPQ2_ONCKI (Pumilio RNA binding family member 2 n=1 Tax=Oncorhynchus kisutch TaxID=8019 RepID=A0A8C7HPQ2_ONCKI)

HSP 1 Score: 79.3 bits (194), Expect = 1.380e-15
Identity = 41/74 (55.41%), Postives = 53/74 (71.62%), Query Frame = 1 
Query:    7 LMTDVFGNYVVQKLFDNGSSAQREALASFLVGHAVQLSLQMYGCRVVQKALEYASIDTLIA--LVSEFGGQVSR 222
            LMTDVFGNYV+QK F+ GS+ Q+ ALA+ + GH + L+LQMYGCRV+QKALE  S D  +   +V E  G V +
Sbjct:  675 LMTDVFGNYVIQKFFEFGSADQKLALATRIRGHVLPLALQMYGCRVIQKALESISSDQQVISDIVRELDGHVLK 748
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BLAST of mRNA_M-pyrifera_M_contig85713.19982.1 vs. uniprot
Match: A0A4W5MSA4_9TELE (Pumilio RNA-binding family member 2 n=1 Tax=Hucho hucho TaxID=62062 RepID=A0A4W5MSA4_9TELE)

HSP 1 Score: 79.3 bits (194), Expect = 1.380e-15
Identity = 41/74 (55.41%), Postives = 53/74 (71.62%), Query Frame = 1 
Query:    7 LMTDVFGNYVVQKLFDNGSSAQREALASFLVGHAVQLSLQMYGCRVVQKALEYASIDTLIA--LVSEFGGQVSR 222
            LMTDVFGNYV+QK F+ GS+ Q+ ALA+ + GH + L+LQMYGCRV+QKALE  S D  +   +V E  G V +
Sbjct:  693 LMTDVFGNYVIQKFFEFGSADQKLALATRIRGHVLPLALQMYGCRVIQKALESISSDQQVISDIVRELDGHVLK 766
[Close]
BLAST of mRNA_M-pyrifera_M_contig85713.19982.1 vs. uniprot
Match: A0A8C7HPK5_ONCKI (Pumilio RNA binding family member 2 n=1 Tax=Oncorhynchus kisutch TaxID=8019 RepID=A0A8C7HPK5_ONCKI)

HSP 1 Score: 79.3 bits (194), Expect = 1.380e-15
Identity = 41/74 (55.41%), Postives = 53/74 (71.62%), Query Frame = 1 
Query:    7 LMTDVFGNYVVQKLFDNGSSAQREALASFLVGHAVQLSLQMYGCRVVQKALEYASIDTLIA--LVSEFGGQVSR 222
            LMTDVFGNYV+QK F+ GS+ Q+ ALA+ + GH + L+LQMYGCRV+QKALE  S D  +   +V E  G V +
Sbjct:  726 LMTDVFGNYVIQKFFEFGSADQKLALATRIRGHVLPLALQMYGCRVIQKALESISSDQQVISDIVRELDGHVLK 799
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig85713.19982.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
UPI000C1CDF711.290e-1758.82pumilio homolog 4-like isoform X1 n=6 Tax=Olea eur... [more]
A0A6A3CJZ6_HIBSY2.130e-1656.16Pumilio-like protein 1 n=4 Tax=Hibiscus syriacus T... [more]
A0A7R9Z8F3_9CHLO3.920e-1657.53Hypothetical protein n=1 Tax=Chlamydomonas euryale... [more]
UPI000E6F63CB5.040e-1656.92uncharacterized protein LOC113285456 isoform X2 n=... [more]
A0A1E4TWH9_PACTA5.430e-1656.92PUM-HD domain-containing protein n=1 Tax=Pachysole... [more]
A0A1Y2HSJ2_9FUNG8.090e-1660.61Armadillo-type protein (Fragment) n=1 Tax=Catenari... [more]
A0A4W5MSR9_9TELE1.380e-1555.41Pumilio RNA-binding family member 2 n=1 Tax=Hucho ... [more]
A0A8C7HPQ2_ONCKI1.380e-1555.41Pumilio RNA binding family member 2 n=1 Tax=Oncorh... [more]
A0A4W5MSA4_9TELE1.380e-1555.41Pumilio RNA-binding family member 2 n=1 Tax=Hucho ... [more]
A0A8C7HPK5_ONCKI1.380e-1555.41Pumilio RNA binding family member 2 n=1 Tax=Oncorh... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig85713contigM-pyrifera_M_contig85713:393..614 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeMetazoa
Seed ortholog score78.2
Seed ortholog evalue1.7e-12
Seed eggNOG ortholog69293.ENSGACP00000012762
Preferred namePUM2
KEGG koko:K17943
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000278,GO:0000280,GO:0000288,GO:0000578,GO:0000900,GO:0000902,GO:0000904,GO:0000956,GO:0001700,GO:0001817,GO:0001819,GO:0001932,GO:0001933,GO:0002682,GO:0002684,GO:0002697,GO:0002699,GO:0002831,GO:0002833,GO:0003002,GO:0003006,GO:0003008,GO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0003730,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005635,GO:0005737,GO:0005829,GO:0006139,GO:0006355,GO:0006396,GO:0006401,GO:0006402,GO:0006417,GO:0006725,GO:0006807,GO:0006928,GO:0006996,GO:0007049,GO:0007140,GO:0007154,GO:0007267,GO:0007268,GO:0007275,GO:0007276,GO:0007280,GO:0007281,GO:0007283,GO:0007292,GO:0007350,GO:0007351,GO:0007389,GO:0007399,GO:0007610,GO:0007611,GO:0007613,GO:0007616,GO:0008150,GO:0008152,GO:0008258,GO:0008354,GO:0008582,GO:0008595,GO:0009056,GO:0009057,GO:0009636,GO:0009653,GO:0009790,GO:0009792,GO:0009798,GO:0009880,GO:0009889,GO:0009890,GO:0009891,GO:0009892,GO:0009893,GO:0009894,GO:0009896,GO:0009948,GO:0009952,GO:0009966,GO:0009967,GO:0009968,GO:0009987,GO:0010033,GO:0010467,GO:0010468,GO:0010494,GO:0010556,GO:0010557,GO:0010558,GO:0010563,GO:0010604,GO:0010605,GO:0010608,GO:0010628,GO:0010629,GO:0010646,GO:0010647,GO:0010648,GO:0012505,GO:0014070,GO:0016020,GO:0016043,GO:0016070,GO:0016071,GO:0016358,GO:0016441,GO:0016458,GO:0016477,GO:0017145,GO:0017148,GO:0019219,GO:0019220,GO:0019222,GO:0019439,GO:0019953,GO:0022008,GO:0022402,GO:0022412,GO:0022414,GO:0022607,GO:0022613,GO:0022618,GO:0023051,GO:0023052,GO:0023056,GO:0023057,GO:0030030,GO:0030154,GO:0030182,GO:0030371,GO:0030424,GO:0030534,GO:0031047,GO:0031050,GO:0031090,GO:0031175,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031327,GO:0031328,GO:0031329,GO:0031331,GO:0031347,GO:0031349,GO:0031399,GO:0031400,GO:0031594,GO:0031965,GO:0031967,GO:0031974,GO:0031975,GO:0031981,GO:0032101,GO:0032103,GO:0032268,GO:0032269,GO:0032270,GO:0032501,GO:0032502,GO:0032504,GO:0032989,GO:0032990,GO:0032991,GO:0033267,GO:0034063,GO:0034248,GO:0034249,GO:0034250,GO:0034399,GO:0034622,GO:0034641,GO:0034655,GO:0035194,GO:0035195,GO:0035196,GO:0035198,GO:0035282,GO:0035770,GO:0036464,GO:0039531,GO:0039535,GO:0040008,GO:0040011,GO:0040029,GO:0042058,GO:0042059,GO:0042078,GO:0042221,GO:0042325,GO:0042326,GO:0042493,GO:0042995,GO:0043005,GO:0043170,GO:0043186,GO:0043195,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043331,GO:0043408,GO:0043409,GO:0043487,GO:0043488,GO:0043679,GO:0043900,GO:0043902,GO:0043933,GO:0044085,GO:0044087,GO:0044237,GO:0044238,GO:0044248,GO:0044260,GO:0044265,GO:0044270,GO:0044306,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044456,GO:0044463,GO:0044464,GO:0044703,GO:0045088,GO:0045089,GO:0045182,GO:0045202,GO:0045471,GO:0045495,GO:0045727,GO:0045786,GO:0045892,GO:0045934,GO:0045935,GO:0045936,GO:0046483,GO:0046677,GO:0046700,GO:0048149,GO:0048232,GO:0048285,GO:0048468,GO:0048471,GO:0048477,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048584,GO:0048585,GO:0048598,GO:0048609,GO:0048638,GO:0048666,GO:0048667,GO:0048699,GO:0048731,GO:0048812,GO:0048813,GO:0048856,GO:0048858,GO:0048869,GO:0048870,GO:0050688,GO:0050776,GO:0050778,GO:0050789,GO:0050793,GO:0050794,GO:0050803,GO:0050804,GO:0050807,GO:0050877,GO:0050890,GO:0050896,GO:0051128,GO:0051171,GO:0051172,GO:0051173,GO:0051174,GO:0051179,GO:0051239,GO:0051240,GO:0051246,GO:0051247,GO:0051248,GO:0051252,GO:0051253,GO:0051254,GO:0051301,GO:0051321,GO:0051674,GO:0051704,GO:0051716,GO:0051726,GO:0051960,GO:0051963,GO:0051983,GO:0060147,GO:0060148,GO:0060211,GO:0060213,GO:0060255,GO:0060293,GO:0060964,GO:0060966,GO:0060968,GO:0061013,GO:0061014,GO:0061174,GO:0061176,GO:0061177,GO:0061980,GO:0065003,GO:0065007,GO:0065008,GO:0070013,GO:0070887,GO:0070918,GO:0070925,GO:0071310,GO:0071359,GO:0071407,GO:0071704,GO:0071826,GO:0071840,GO:0080090,GO:0080134,GO:0090079,GO:0090304,GO:0097159,GO:0097305,GO:0097458,GO:0097482,GO:0098793,GO:0098794,GO:0098916,GO:0098975,GO:0099177,GO:0099536,GO:0099537,GO:0099572,GO:0120025,GO:0120036,GO:0120038,GO:0120039,GO:0140013,GO:0150034,GO:1900151,GO:1900153,GO:1900246,GO:1901184,GO:1901185,GO:1901360,GO:1901361,GO:1901363,GO:1901575,GO:1901698,GO:1901699,GO:1901700,GO:1902531,GO:1902532,GO:1902533,GO:1902679,GO:1903046,GO:1903311,GO:1903313,GO:1903506,GO:1903507,GO:1904396,GO:1990904,GO:2000026,GO:2000112,GO:2000113,GO:2000637,GO:2001141
EggNOG free text desc.Pumilio homolog 2
EggNOG OGs38BAP@33154,3BDZ5@33208,3CTGS@33213,484ET@7711,49189@7742,4A0CB@7898,COG5099@1,KOG1488@2759
COG Functional cat.J
Best tax levelActinopterygii
Best eggNOG OGNA|NA|NA
BRITEko00000
Exons1
Model size222
Cds size213
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816767.1950433-UTR-M-pyrifera_M_contig85713:392..4011622816767.1950433-UTR-M-pyrifera_M_contig85713:392..401Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig85713 393..401 +
1692278166.3307312-UTR-M-pyrifera_M_contig85713:392..4011692278166.3307312-UTR-M-pyrifera_M_contig85713:392..401Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig85713 393..401 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816767.2073977-CDS-M-pyrifera_M_contig85713:401..6141622816767.2073977-CDS-M-pyrifera_M_contig85713:401..614Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig85713 402..614 +
1692278166.3503797-CDS-M-pyrifera_M_contig85713:401..6141692278166.3503797-CDS-M-pyrifera_M_contig85713:401..614Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig85713 402..614 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig85713.19982.1prot_M-pyrifera_M_contig85713.19982.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig85713 402..614 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig85713.19982.1

>prot_M-pyrifera_M_contig85713.19982.1 ID=prot_M-pyrifera_M_contig85713.19982.1|Name=mRNA_M-pyrifera_M_contig85713.19982.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=71bp
MTDVFGNYVVQKLFDNGSSAQREALASFLVGHAVQLSLQMYGCRVVQKAL
EYASIDTLIALVSEFGGQVSR
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mRNA from alignment at M-pyrifera_M_contig85713:393..614+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig85713.19982.1 ID=mRNA_M-pyrifera_M_contig85713.19982.1|Name=mRNA_M-pyrifera_M_contig85713.19982.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=222bp|location=Sequence derived from alignment at M-pyrifera_M_contig85713:393..614+ (Macrocystis pyrifera P11B4 male)
CCCAGCCTGATGACGGATGTGTTCGGGAACTACGTAGTGCAGAAGCTGTT
CGACAATGGGAGTTCCGCTCAGCGGGAGGCGTTGGCGAGCTTCCTTGTAG
GGCACGCGGTTCAGCTGTCCCTCCAGATGTACGGGTGCCGTGTGGTGCAG
AAGGCTCTCGAGTACGCATCCATCGACACGCTCATCGCACTCGTCTCCGA
ATTCGGGGGTCAGGTTAGTCGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig85713:393..614+

>mRNA_M-pyrifera_M_contig85713.19982.1 ID=mRNA_M-pyrifera_M_contig85713.19982.1|Name=mRNA_M-pyrifera_M_contig85713.19982.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=426bp|location=Sequence derived from alignment at M-pyrifera_M_contig85713:393..614+ (Macrocystis pyrifera P11B4 male)
ATGACGGATGTGTTCGGGAACTACGTAGTGCAGAAGCTGTTCGACAATGG
GAGTTCCGCTCAGCGGGAGGCGTTGGCGAGCTTCCTTGTAGGGCACGCGG
TTCAGCTGTCCCTCCAGATGTACGGGTGCCGTGTGGTGCAGAAGGCTCTC
GAGTACGCATCCATCGACACGCTCATCGCACTCGTCTCCGAATTCGGGGG
TCAGGTTAGTCGAATGACGGATGTGTTCGGGAACTACGTAGTGCAGAAGC
TGTTCGACAATGGGAGTTCCGCTCAGCGGGAGGCGTTGGCGAGCTTCCTT
GTAGGGCACGCGGTTCAGCTGTCCCTCCAGATGTACGGGTGCCGTGTGGT
GCAGAAGGCTCTCGAGTACGCATCCATCGACACGCTCATCGCACTCGTCT
CCGAATTCGGGGGTCAGGTTAGTCGA
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