mRNA_M-pyrifera_M_contig109527.1998.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig109527.1998.1
Unique NamemRNA_M-pyrifera_M_contig109527.1998.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig109527.1998.1 vs. uniprot
Match: A0A2D9CDN3_9BACT (Pyruvate dehydrogenase E1 component subunit alpha n=4 Tax=Phycisphaerae TaxID=666505 RepID=A0A2D9CDN3_9BACT)

HSP 1 Score: 229 bits (583), Expect = 7.100e-72
Identity = 110/148 (74.32%), Postives = 128/148 (86.49%), Query Frame = 1
Query:    1 DRAKGYGIKSITIDGLDILHVYEQLKPFFDDCREKQRPGFVNFKTYRYQGHSMSDPQKYRTKDEVDQYKDKDSIAKLVSDLMNAEHLSEDDWKAMQKEIRETVRAAVDAAENAANPEDSELFTDVYANPEKNLSPTATYTHGTKNPLV 444
            DRAKGYG+ +  IDGLDI+++Y + +P  D CRE+ RP F++ KTYRYQGHSMSDPQKYRTK+EVDQYKDKDSIAKLVSDLM+   LSE DWK+MQK+IR+ VRAA+DAAE A  PED ELFTDVYANPEKNLSPTATY+HGTKNPL+
Sbjct:  226 DRAKGYGMLTTKIDGLDIMNIYNEFRPIVDQCREESRPAFIDLKTYRYQGHSMSDPQKYRTKEEVDQYKDKDSIAKLVSDLMDKGWLSEGDWKSMQKDIRDIVRAAIDAAEAAPAPEDDELFTDVYANPEKNLSPTATYSHGTKNPLM 373          
BLAST of mRNA_M-pyrifera_M_contig109527.1998.1 vs. uniprot
Match: A0A2A4RKU9_9BACT (Pyruvate dehydrogenase E1 component subunit alpha n=1 Tax=bacterium TaxID=1869227 RepID=A0A2A4RKU9_9BACT)

HSP 1 Score: 218 bits (556), Expect = 7.060e-68
Identity = 106/148 (71.62%), Postives = 121/148 (81.76%), Query Frame = 1
Query:    1 DRAKGYGIKSITIDGLDILHVYEQLKPFFDDCREKQRPGFVNFKTYRYQGHSMSDPQKYRTKDEVDQYKDKDSIAKLVSDLMNAEHLSEDDWKAMQKEIRETVRAAVDAAENAANPEDSELFTDVYANPEKNLSPTATYTHGTKNPLV 444
            DRAKGYGIK+  IDGLDI+++Y + KP  D+CRE  RP F++ KTYRYQGHSMSDPQKYRTKDEVDQYKDKDSIAKL SDLM   H  E  WK M+KEI + VRA+V+ AE A  PE SEL+TDVYANP+KNLSPTATYTHG KNPL+
Sbjct:  220 DRAKGYGIKAAKIDGLDIMNIYNEFKPIVDECRESSRPAFIDLKTYRYQGHSMSDPQKYRTKDEVDQYKDKDSIAKLCSDLMTMGHXDEAGWKTMRKEISDIVRASVEHAEAAPIPEASELYTDVYANPQKNLSPTATYTHGAKNPLM 367          
BLAST of mRNA_M-pyrifera_M_contig109527.1998.1 vs. uniprot
Match: A0A3M8FYQ8_9BACT (Pyruvate dehydrogenase E1 component subunit alpha n=1 Tax=Phycisphaera sp. TaxID=2030824 RepID=A0A3M8FYQ8_9BACT)

HSP 1 Score: 205 bits (521), Expect = 1.250e-62
Identity = 100/148 (67.57%), Postives = 122/148 (82.43%), Query Frame = 1
Query:    4 RAKGYGIKSITIDGLDILHVYEQLKPFFDDCREKQRPGFVNFKTYRYQGHSMSDPQKYRTKDEVDQYKDKDSIAKLVSDLMNA-EHLSEDDWKAMQKEIRETVRAAVDAAENAANPEDSELFTDVYANPEKNLSPTATYTHGTKNPLV 444
            R + +GIKS+ IDGLDIL+VY+Q KP  D+CR+ QRP FV+FKTYRYQGHSMSDPQKYRTK+EVDQ+K+KDSIA L+  LMN  + ++ED WKAM+KEI+E VR AV  AENA +P+  EL+TDVYANP+ NLSPTA Y HG KNPL+
Sbjct:  218 RGEAFGIKSVKIDGLDILNVYDQFKPLVDECRDLQRPAFVDFKTYRYQGHSMSDPQKYRTKEEVDQFKEKDSIANLLGHLMNERDAINEDSWKAMRKEIQEEVREAVQFAENATDPDIEELYTDVYANPQPNLSPTAEYKHGAKNPLL 365          
BLAST of mRNA_M-pyrifera_M_contig109527.1998.1 vs. uniprot
Match: A0A2G2A0W5_9BACT (Pyruvate dehydrogenase E1 component subunit alpha n=1 Tax=Phycisphaera sp. TaxID=2030824 RepID=A0A2G2A0W5_9BACT)

HSP 1 Score: 196 bits (498), Expect = 3.570e-59
Identity = 98/148 (66.22%), Postives = 117/148 (79.05%), Query Frame = 1
Query:    4 RAKGYGIKSITIDGLDILHVYEQLKPFFDDCREKQRPGFVNFKTYRYQGHSMSDPQKYRTKDEVDQYKDKDSIAKLVSDLMNA-EHLSEDDWKAMQKEIRETVRAAVDAAENAANPEDSELFTDVYANPEKNLSPTATYTHGTKNPLV 444
            R + +G+K++ IDGLDIL+VY+Q KP  D+CR+ QRP FV+FKTYRYQGHSMSDPQKYRTK EVD +K+KDSIA L+  LM+  E + ED WKAM+KE+   VR AVD AENA  P+ SELFTDVYANP  NLSPTA Y HG KNPL+
Sbjct:  218 RGQAFGMKAVKIDGLDILNVYDQFKPLVDECRDLQRPAFVDFKTYRYQGHSMSDPQKYRTKAEVDAFKEKDSIANLLGHLMDERECIDEDSWKAMRKELAVIVREAVDFAENAPEPDPSELFTDVYANPMPNLSPTADYGHGAKNPLL 365          
BLAST of mRNA_M-pyrifera_M_contig109527.1998.1 vs. uniprot
Match: A0A2E2N6S8_9BACT (Pyruvate dehydrogenase E1 component subunit alpha n=1 Tax=Phycisphaerae bacterium TaxID=2026778 RepID=A0A2E2N6S8_9BACT)

HSP 1 Score: 195 bits (496), Expect = 8.560e-59
Identity = 95/154 (61.69%), Postives = 119/154 (77.27%), Query Frame = 1
Query:    1 DRAKGYGIKSITIDGLDILHVYEQLKPFFDDCREKQRPGFVNFKTYRYQGHSMSDPQKYRTKDEVDQYKDKDSIAKLVSDLMNAEH------LSEDDWKAMQKEIRETVRAAVDAAENAANPEDSELFTDVYANPEKNLSPTATYTHGTKNPLV 444
            DRA+ +G++ + +DGLD++ +YEQ +P  DDCRE+Q P FV+ KTYRYQGHSMSDPQKYRTKDEV+QYK+KDSIA+L S LM  +       LSEDDW AMQKEI++ V+ A+D AE A  P +SEL TDVYANP+ NLSP + Y HG KNPL+
Sbjct:  219 DRAEAFGVRGVEMDGLDVMSLYEQFRPVVDDCRERQVPAFVDLKTYRYQGHSMSDPQKYRTKDEVEQYKEKDSIARLASQLMTPKDDGGRGILSEDDWSAMQKEIKDLVKEAMDFAEEAEAPGESELTTDVYANPQPNLSPQSVYGHGVKNPLL 372          
BLAST of mRNA_M-pyrifera_M_contig109527.1998.1 vs. uniprot
Match: A0A3M2CPU3_9BACT (Pyruvate dehydrogenase E1 component subunit alpha n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A3M2CPU3_9BACT)

HSP 1 Score: 192 bits (488), Expect = 1.160e-57
Identity = 97/148 (65.54%), Postives = 117/148 (79.05%), Query Frame = 1
Query:    4 RAKGYGIKSITIDGLDILHVYEQLKPFFDDCREKQRPGFVNFKTYRYQGHSMSDPQKYRTKDEVDQYKDKDSIAKLVSDLMNAEHLSEDDWKAMQKEIRETVRAAVDAAENAANPEDS-ELFTDVYANPEKNLSPTATYTHGTKNPLV 444
            R + YGI SI IDGLDI +VY Q KPF D CRE  RPGFV+ KTYRYQGHSMSDPQKYRTK+EV++YK+KDSIA+L+ +LM+   ++ED WK MQ EIR+ V  AV+ AEN+  P+ + ELFTDVYA P+KNLSPTA Y HG KNPL+
Sbjct:  219 RGESYGIDSIQIDGLDIRNVYNQFKPFVDRCRENSRPGFVDLKTYRYQGHSMSDPQKYRTKEEVEEYKNKDSIARLLGNLMDEGAITEDGWKQMQNEIRDEVLDAVEFAENSPAPDPAGELFTDVYALPQKNLSPTAEYHHGAKNPLL 366          
BLAST of mRNA_M-pyrifera_M_contig109527.1998.1 vs. uniprot
Match: A0A7V1MCI0_9BACT (Pyruvate dehydrogenase E1 component subunit alpha n=1 Tax=Phycisphaerales bacterium TaxID=2052180 RepID=A0A7V1MCI0_9BACT)

HSP 1 Score: 184 bits (468), Expect = 1.140e-54
Identity = 90/149 (60.40%), Postives = 113/149 (75.84%), Query Frame = 1
Query:    1 DRAKGYGIKSITIDGLDILHVYEQLKPFFDDCREKQRPGFVNFKTYRYQGHSMSDPQKYRTKDEVDQYKDKDSIAKLVSDLMNAEH-LSEDDWKAMQKEIRETVRAAVDAAENAANPEDSELFTDVYANPEKNLSPTATYTHGTKNPLV 444
            +R K +GI ++ IDGLDI ++Y+Q KP  D+CR+ QRP F++ KTYRYQGHSMSDPQKYRTKDEVD+YK KDSIA L+  LM   + + E  WKAM+KE+   V+ AV+ AE A  P+ SELFTDVY NP+ NLSP+A Y HG KNPL+
Sbjct:  217 ERGKAFGINAVEIDGLDIRNLYDQFKPIADECRDLQRPAFIDLKTYRYQGHSMSDPQKYRTKDEVDRYKKKDSIANLLHHLMTERNCIDEAGWKAMRKELSAEVKEAVEFAEQAPKPDPSELFTDVYTNPQPNLSPSAVYHHGEKNPLL 365          
BLAST of mRNA_M-pyrifera_M_contig109527.1998.1 vs. uniprot
Match: A0A6M8W055_9BACT (Pyruvate dehydrogenase E1 component subunit alpha n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A6M8W055_9BACT)

HSP 1 Score: 184 bits (466), Expect = 2.700e-54
Identity = 97/154 (62.99%), Postives = 113/154 (73.38%), Query Frame = 1
Query:    4 RAKGYGIKSITIDGLDILHVYEQLKPFFDDCREKQRPGFVNFKTYRYQGHSMSDPQKYRTKDEVDQYKDKDSIAKLVSDLMNA------EHLSEDDWKAMQKEIRETVRAAVDAAENAANPE-DSELFTDVYANPEKNLSPTATYTHGTKNPLV 444
            R + YGIKSI IDG DI+ VY+Q KP  D+CR+ QRPGFV+ KTYRY GHSMSDPQKYRTKDEVD +K+KDSIA L S LM A      E LSEDDWKAM+ EI E VR AV  AEN  +P+  +EL++DVY +P  NLSP   Y HG KNPL+
Sbjct:  219 RGQSYGIKSIEIDGFDIVDVYDQFKPLADECRDLQRPGFVDLKTYRYMGHSMSDPQKYRTKDEVDTWKEKDSIAALASRLMTAKSDGGRECLSEDDWKAMRSEIAEIVRDAVQFAENGTDPDVGAELYSDVYIHPVPNLSPMGDYIHGDKNPLL 372          
BLAST of mRNA_M-pyrifera_M_contig109527.1998.1 vs. uniprot
Match: A0A7D8UJE0_9BACT (Pyruvate dehydrogenase E1 component subunit alpha n=1 Tax=Phycisphaerales bacterium TaxID=2052180 RepID=A0A7D8UJE0_9BACT)

HSP 1 Score: 183 bits (465), Expect = 2.890e-54
Identity = 93/149 (62.42%), Postives = 115/149 (77.18%), Query Frame = 1
Query:    4 RAKGYGIKSITIDGLDILHVYEQLKPFFDDCREKQRPGFVNFKTYRYQGHSMSDPQKYRTKDEVDQYKDKDSIAKLVSDLMNAEH-LSEDDWKAMQKEIRETVRAAVDAAENAANPE-DSELFTDVYANPEKNLSPTATYTHGTKNPLV 444
            +AKGYGIK I IDG+ I+ VY+  KP  D+CR+ QRPGFV+ KTYRYQGHSMSDPQKYRTK+EV+  K++DSIA L S LM     LSEDDWKAMQKEIR+ V+ +VD AE A  P  + EL++DV+ +P  NLSP+  YTHG+KNPL+
Sbjct:  213 KAKGYGIKGIEIDGMSIMDVYDAFKPLVDECRDLQRPGFVDLKTYRYQGHSMSDPQKYRTKEEVEDAKERDSIANLASHLMQERGCLSEDDWKAMQKEIRDIVKESVDFAEAAEAPSVEEELYSDVFIHPLPNLSPSGAYTHGSKNPLL 361          
BLAST of mRNA_M-pyrifera_M_contig109527.1998.1 vs. uniprot
Match: A0A6G3ZDR6_9CYAN (E1_dh domain-containing protein (Fragment) n=1 Tax=Leptolyngbya sp. SIO1D8 TaxID=2607807 RepID=A0A6G3ZDR6_9CYAN)

HSP 1 Score: 177 bits (448), Expect = 3.880e-54
Identity = 91/149 (61.07%), Postives = 112/149 (75.17%), Query Frame = 1
Query:    4 RAKGYGIKSITIDGLDILHVYEQLKPFFDDCREKQRPGFVNFKTYRYQGHSMSDPQKYRTKDEVDQYKDKDSIAKLVSDLMNAEH-LSEDDWKAMQKEIRETVRAAVDAAENAANPE-DSELFTDVYANPEKNLSPTATYTHGTKNPLV 444
            R K YGI S+ IDGLDI  VY+Q KP  D CRE+Q+P FV+  TYRYQGHSMSDPQKYRTK+EVDQYK KDSIA L+  LMN    + ED WKAM+ EIR+ V+ AV+ AE+A  P+ D+EL++DV+  P+ NLSPT  Y HG KNP++
Sbjct:   18 RGKSYGIHSVQIDGLDIRDVYDQFKPVVDQCREEQKPAFVDLLTYRYQGHSMSDPQKYRTKEEVDQYKGKDSIAALLDHLMNDRGAIDEDAWKAMRGEIRDEVKDAVEFAESAEVPDVDAELYSDVFVYPQANLSPTREYIHGAKNPVL 166          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig109527.1998.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2D9CDN3_9BACT7.100e-7274.32Pyruvate dehydrogenase E1 component subunit alpha ... [more]
A0A2A4RKU9_9BACT7.060e-6871.62Pyruvate dehydrogenase E1 component subunit alpha ... [more]
A0A3M8FYQ8_9BACT1.250e-6267.57Pyruvate dehydrogenase E1 component subunit alpha ... [more]
A0A2G2A0W5_9BACT3.570e-5966.22Pyruvate dehydrogenase E1 component subunit alpha ... [more]
A0A2E2N6S8_9BACT8.560e-5961.69Pyruvate dehydrogenase E1 component subunit alpha ... [more]
A0A3M2CPU3_9BACT1.160e-5765.54Pyruvate dehydrogenase E1 component subunit alpha ... [more]
A0A7V1MCI0_9BACT1.140e-5460.40Pyruvate dehydrogenase E1 component subunit alpha ... [more]
A0A6M8W055_9BACT2.700e-5462.99Pyruvate dehydrogenase E1 component subunit alpha ... [more]
A0A7D8UJE0_9BACT2.890e-5462.42Pyruvate dehydrogenase E1 component subunit alpha ... [more]
A0A6G3ZDR6_9CYAN3.880e-5461.07E1_dh domain-containing protein (Fragment) n=1 Tax... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig109527contigM-pyrifera_M_contig109527:5..451 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score120.6
Seed ortholog evalue6.4e-25
Seed eggNOG ortholog1121104.AQXH01000002_gene598
Preferred namepdhA
KEGG rclassRC00004,RC00027,RC00627,RC02742,RC02744,RC02882
KEGG koko:K00161
KEGG ReactionR00014,R00209,R01699,R03270
KEGG Pathwayko00010,ko00020,ko00620,ko01100,ko01110,ko01120,ko01130,ko01200,ko04066,ko04922,ko05230,map00010,map00020,map00620,map01100,map01110,map01120,map01130,map01200,map04066,map04922,map05230
KEGG ModuleM00307
Hectar predicted targeting categoryother localisation
EggNOG free text desc.The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2)
EggNOG OGs1IPU9@117747,4NF2J@976,COG1071@1,COG1071@2
EC1.2.4.1
COG Functional cat.C
Best tax levelSphingobacteriia
Best eggNOG OGNA|NA|NA
BRITEbr01601,ko00000,ko00001,ko00002,ko01000
Exons1
Model size447
Cds size447
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815605.7089064-CDS-M-pyrifera_M_contig109527:4..4511622815605.7089064-CDS-M-pyrifera_M_contig109527:4..451Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig109527 5..451 +
1692277484.1774344-CDS-M-pyrifera_M_contig109527:4..4511692277484.1774344-CDS-M-pyrifera_M_contig109527:4..451Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig109527 5..451 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig109527.1998.1prot_M-pyrifera_M_contig109527.1998.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig109527 5..451 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig109527.1998.1

>prot_M-pyrifera_M_contig109527.1998.1 ID=prot_M-pyrifera_M_contig109527.1998.1|Name=mRNA_M-pyrifera_M_contig109527.1998.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=149bp
DRAKGYGIKSITIDGLDILHVYEQLKPFFDDCREKQRPGFVNFKTYRYQG
HSMSDPQKYRTKDEVDQYKDKDSIAKLVSDLMNAEHLSEDDWKAMQKEIR
ETVRAAVDAAENAANPEDSELFTDVYANPEKNLSPTATYTHGTKNPLV*
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mRNA from alignment at M-pyrifera_M_contig109527:5..451+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig109527.1998.1 ID=mRNA_M-pyrifera_M_contig109527.1998.1|Name=mRNA_M-pyrifera_M_contig109527.1998.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=447bp|location=Sequence derived from alignment at M-pyrifera_M_contig109527:5..451+ (Macrocystis pyrifera P11B4 male)
GATCGCGCCAAGGGCTACGGCATCAAATCGATCACAATCGACGGACTCGA CATCCTGCATGTCTACGAGCAGCTCAAGCCGTTCTTCGATGACTGTCGCG AGAAGCAACGTCCAGGGTTCGTGAACTTCAAAACCTATCGCTATCAGGGA CACTCGATGTCTGATCCCCAGAAGTACAGAACGAAAGACGAAGTCGATCA GTACAAGGATAAGGACTCGATCGCGAAGCTCGTGAGCGATCTGATGAACG CGGAACATCTGTCTGAAGACGACTGGAAAGCGATGCAGAAGGAGATTCGT GAGACTGTGCGTGCCGCCGTCGACGCCGCGGAGAACGCCGCGAATCCTGA GGACAGCGAGCTGTTCACAGATGTCTACGCGAACCCCGAGAAGAATCTCT CCCCCACCGCCACATACACCCACGGCACGAAGAACCCACTAGTCTGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig109527:5..451+

>mRNA_M-pyrifera_M_contig109527.1998.1 ID=mRNA_M-pyrifera_M_contig109527.1998.1|Name=mRNA_M-pyrifera_M_contig109527.1998.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=894bp|location=Sequence derived from alignment at M-pyrifera_M_contig109527:5..451+ (Macrocystis pyrifera P11B4 male)
GATCGCGCCAAGGGCTACGGCATCAAATCGATCACAATCGACGGACTCGA
CATCCTGCATGTCTACGAGCAGCTCAAGCCGTTCTTCGATGACTGTCGCG
AGAAGCAACGTCCAGGGTTCGTGAACTTCAAAACCTATCGCTATCAGGGA
CACTCGATGTCTGATCCCCAGAAGTACAGAACGAAAGACGAAGTCGATCA
GTACAAGGATAAGGACTCGATCGCGAAGCTCGTGAGCGATCTGATGAACG
CGGAACATCTGTCTGAAGACGACTGGAAAGCGATGCAGAAGGAGATTCGT
GAGACTGTGCGTGCCGCCGTCGACGCCGCGGAGAACGCCGCGAATCCTGA
GGACAGCGAGCTGTTCACAGATGTCTACGCGAACCCCGAGAAGAATCTCT
CCCCCACCGCCACATACACCCACGGCACGAAGAACCCACTAGTCTGAGAT
CGCGCCAAGGGCTACGGCATCAAATCGATCACAATCGACGGACTCGACAT
CCTGCATGTCTACGAGCAGCTCAAGCCGTTCTTCGATGACTGTCGCGAGA
AGCAACGTCCAGGGTTCGTGAACTTCAAAACCTATCGCTATCAGGGACAC
TCGATGTCTGATCCCCAGAAGTACAGAACGAAAGACGAAGTCGATCAGTA
CAAGGATAAGGACTCGATCGCGAAGCTCGTGAGCGATCTGATGAACGCGG
AACATCTGTCTGAAGACGACTGGAAAGCGATGCAGAAGGAGATTCGTGAG
ACTGTGCGTGCCGCCGTCGACGCCGCGGAGAACGCCGCGAATCCTGAGGA
CAGCGAGCTGTTCACAGATGTCTACGCGAACCCCGAGAAGAATCTCTCCC
CCACCGCCACATACACCCACGGCACGAAGAACCCACTAGTCTGA
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