mRNA_M-pyrifera_M_contig85675.19973.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig85675.19973.1
Unique NamemRNA_M-pyrifera_M_contig85675.19973.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig85675.19973.1 vs. uniprot
Match: A0A835YLK1_9STRA (A2M domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YLK1_9STRA)

HSP 1 Score: 83.6 bits (205), Expect = 2.620e-14
Identity = 85/269 (31.60%), Postives = 120/269 (44.61%), Query Frame = 1 
Query:    1 AGDEATIHVLARYEDGSPAKGAMVVFHAVIGDVEVWSGEDVLGKDGAIEMKFR------LPSPASWDADALGVVSCVVVSDGARESLSVPIVMAAVYPEIRVSVVGGEMLVGAPSRVAIEVATVAGLPMDLIGEVC--VVGSH---ACVAQVETVHEGRGVSELFQ-VQQLVYEFRVREPFRTARSLHPIPLPAPLSSGASLVVTNRSVAANASIDAMVYCLGTVGVRVSLFNHGVAVWESKELRCDVGIPRPHSITIPLLSPMAYGVL 771
            AG+   + +      G  A GA V   A I   EV+  E      GAI++         +P P SW A  +G++S  V   G  ++ +V + + A   +I V   GG+++ GAPSR+ +      G P+    +VC  VVG     ACVA VET+HEGRGVS LF       Y  RV  P         + LP     GA+L         N S+   V       +R++L+     V  S  LR   G+  P    +PL +P+A GVL
Sbjct:  268 AGEAVGVALSVERAQGGAALGADVTVVARIDGHEVYRSEP-----GAIKVPASGNVNAVVPLPQSWMA-GVGLLSVTVTDGGTVDTTTVALPLVAAALDISVYPEGGDLVAGAPSRIYVSAQQPDGSPVRAAADVCEAVVGGGSGGACVASVETLHEGRGVSMLFTPASGKSYVLRVVRPTHQE-----VTLPDVKPQGATLHALKPYYRPNESVAFAVASTTERVLRLTLYKREAEV-ASVALRVRAGVTPPTFRLLPLSNPLAEGVL 524
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig85675.19973.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A835YLK1_9STRA2.620e-1431.60A2M domain-containing protein n=1 Tax=Tribonema mi... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig85675contigM-pyrifera_M_contig85675:19..855 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score75.5
Seed ortholog evalue4.4e-11
Seed eggNOG ortholog1144275.COCOR_03421
KEGG koko:K06894
Hectar predicted targeting categoryother localisation
EggNOG free text desc.A-macroglobulin complement component
EggNOG OGs1QTCC@1224,2X356@28221,2YUBE@29,437VK@68525,COG2373@1,COG2373@2
COG Functional cat.S
Best tax levelMyxococcales
Best eggNOG OGNA|NA|NA
BRITEko00000
Exons1
Model size837
Cds size837
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816766.7213643-CDS-M-pyrifera_M_contig85675:18..8551622816766.7213643-CDS-M-pyrifera_M_contig85675:18..855Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig85675 19..855 -
1692278166.0294456-CDS-M-pyrifera_M_contig85675:18..8551692278166.0294456-CDS-M-pyrifera_M_contig85675:18..855Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig85675 19..855 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig85675.19973.1prot_M-pyrifera_M_contig85675.19973.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig85675 19..855 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig85675.19973.1

>prot_M-pyrifera_M_contig85675.19973.1 ID=prot_M-pyrifera_M_contig85675.19973.1|Name=mRNA_M-pyrifera_M_contig85675.19973.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=279bp
AGDEATIHVLARYEDGSPAKGAMVVFHAVIGDVEVWSGEDVLGKDGAIEM
KFRLPSPASWDADALGVVSCVVVSDGARESLSVPIVMAAVYPEIRVSVVG
GEMLVGAPSRVAIEVATVAGLPMDLIGEVCVVGSHACVAQVETVHEGRGV
SELFQVQQLVYEFRVREPFRTARSLHPIPLPAPLSSGASLVVTNRSVAAN
ASIDAMVYCLGTVGVRVSLFNHGVAVWESKELRCDVGIPRPHSITIPLLS
PMAYGVLTIVVEDTENGHRLAEDLVYRHP
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mRNA from alignment at M-pyrifera_M_contig85675:19..855-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig85675.19973.1 ID=mRNA_M-pyrifera_M_contig85675.19973.1|Name=mRNA_M-pyrifera_M_contig85675.19973.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=837bp|location=Sequence derived from alignment at M-pyrifera_M_contig85675:19..855- (Macrocystis pyrifera P11B4 male)
GCGGGTGATGAGGCGACGATTCATGTTTTGGCCCGTTACGAGGATGGGAG
TCCAGCGAAAGGGGCGATGGTGGTTTTCCATGCTGTAATTGGAGATGTGG
AGGTGTGGAGTGGGGAAGATGTGTTGGGGAAAGATGGCGCGATTGAGATG
AAGTTTCGACTCCCTTCTCCTGCTTCTTGGGACGCAGACGCACTTGGTGT
TGTGAGTTGTGTGGTCGTATCCGATGGGGCTCGAGAGTCATTGTCTGTGC
CGATAGTGATGGCAGCGGTGTATCCCGAAATTCGTGTCAGCGTGGTTGGC
GGAGAGATGTTGGTGGGGGCTCCAAGTCGAGTGGCAATCGAAGTTGCGAC
TGTGGCGGGTTTGCCCATGGATTTGATTGGAGAGGTGTGTGTGGTTGGTT
CTCATGCATGCGTGGCTCAAGTCGAGACCGTGCACGAAGGGAGAGGAGTG
TCGGAGTTGTTCCAAGTGCAACAGCTGGTGTATGAGTTTCGAGTTCGAGA
ACCTTTTCGAACTGCTCGATCCCTCCACCCCATCCCTCTCCCCGCCCCCC
TGTCATCCGGAGCTTCATTGGTTGTCACGAACCGTTCAGTTGCAGCCAAT
GCATCCATTGACGCGATGGTGTATTGTTTGGGGACAGTGGGAGTGAGGGT
GTCTCTGTTCAATCACGGTGTGGCGGTTTGGGAGTCGAAGGAACTTCGAT
GTGATGTTGGAATCCCACGTCCTCACTCCATCACCATCCCACTCCTCTCC
CCGATGGCATATGGTGTACTTACGATTGTTGTAGAGGACACTGAGAATGG
TCATCGTCTTGCTGAAGACCTTGTCTATCGCCACCCA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig85675:19..855-

>mRNA_M-pyrifera_M_contig85675.19973.1 ID=mRNA_M-pyrifera_M_contig85675.19973.1|Name=mRNA_M-pyrifera_M_contig85675.19973.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1674bp|location=Sequence derived from alignment at M-pyrifera_M_contig85675:19..855- (Macrocystis pyrifera P11B4 male)
GCGGGTGATGAGGCGACGATTCATGTTTTGGCCCGTTACGAGGATGGGAG
TCCAGCGAAAGGGGCGATGGTGGTTTTCCATGCTGTAATTGGAGATGTGG
AGGTGTGGAGTGGGGAAGATGTGTTGGGGAAAGATGGCGCGATTGAGATG
AAGTTTCGACTCCCTTCTCCTGCTTCTTGGGACGCAGACGCACTTGGTGT
TGTGAGTTGTGTGGTCGTATCCGATGGGGCTCGAGAGTCATTGTCTGTGC
CGATAGTGATGGCAGCGGTGTATCCCGAAATTCGTGTCAGCGTGGTTGGC
GGAGAGATGTTGGTGGGGGCTCCAAGTCGAGTGGCAATCGAAGTTGCGAC
TGTGGCGGGTTTGCCCATGGATTTGATTGGAGAGGTGTGTGTGGTTGGTT
CTCATGCATGCGTGGCTCAAGTCGAGACCGTGCACGAAGGGAGAGGAGTG
TCGGAGTTGTTCCAAGTGCAACAGCTGGTGTATGAGTTTCGAGTTCGAGA
ACCTTTTCGAACTGCTCGATCCCTCCACCCCATCCCTCTCCCCGCCCCCC
TGTCATCCGGAGCTTCATTGGTTGTCACGAACCGTTCAGTTGCAGCCAAT
GCATCCATTGACGCGATGGTGTATTGTTTGGGGACAGTGGGAGTGAGGGT
GTCTCTGTTCAATCACGGTGTGGCGGTTTGGGAGTCGAAGGAACTTCGAT
GTGATGTTGGAATCCCACGTCCTCACTCCATCACCATCCCACTCCTCTCC
CCGATGGCATATGGTGTACTTACGATTGTTGTAGAGGACACTGAGAATGG
TCATCGTCTTGCTGAAGACCTTGTCTATCGCCACCCAGCGGGTGATGAGG
CGACGATTCATGTTTTGGCCCGTTACGAGGATGGGAGTCCAGCGAAAGGG
GCGATGGTGGTTTTCCATGCTGTAATTGGAGATGTGGAGGTGTGGAGTGG
GGAAGATGTGTTGGGGAAAGATGGCGCGATTGAGATGAAGTTTCGACTCC
CTTCTCCTGCTTCTTGGGACGCAGACGCACTTGGTGTTGTGAGTTGTGTG
GTCGTATCCGATGGGGCTCGAGAGTCATTGTCTGTGCCGATAGTGATGGC
AGCGGTGTATCCCGAAATTCGTGTCAGCGTGGTTGGCGGAGAGATGTTGG
TGGGGGCTCCAAGTCGAGTGGCAATCGAAGTTGCGACTGTGGCGGGTTTG
CCCATGGATTTGATTGGAGAGGTGTGTGTGGTTGGTTCTCATGCATGCGT
GGCTCAAGTCGAGACCGTGCACGAAGGGAGAGGAGTGTCGGAGTTGTTCC
AAGTGCAACAGCTGGTGTATGAGTTTCGAGTTCGAGAACCTTTTCGAACT
GCTCGATCCCTCCACCCCATCCCTCTCCCCGCCCCCCTGTCATCCGGAGC
TTCATTGGTTGTCACGAACCGTTCAGTTGCAGCCAATGCATCCATTGACG
CGATGGTGTATTGTTTGGGGACAGTGGGAGTGAGGGTGTCTCTGTTCAAT
CACGGTGTGGCGGTTTGGGAGTCGAAGGAACTTCGATGTGATGTTGGAAT
CCCACGTCCTCACTCCATCACCATCCCACTCCTCTCCCCGATGGCATATG
GTGTACTTACGATTGTTGTAGAGGACACTGAGAATGGTCATCGTCTTGCT
GAAGACCTTGTCTATCGCCACCCA
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