mRNA_M-pyrifera_M_contig85665.19968.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig85665.19968.1
Unique NamemRNA_M-pyrifera_M_contig85665.19968.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
[Close]
BLAST of mRNA_M-pyrifera_M_contig85665.19968.1 vs. uniprot
Match: A0A5Q0UYQ1_9FABA (DNA-directed RNA polymerase (Fragment) n=3 Tax=Mesangiospermae TaxID=1437183 RepID=A0A5Q0UYQ1_9FABA)

HSP 1 Score: 529 bits (1363), Expect = 6.100e-184
Identity = 266/281 (94.66%), Postives = 273/281 (97.15%), Query Frame = 1 
Query:    1 GGRLELKIARKAMIRARLKRKKKISILLLSSAMGSNLREILENVCYPEIFLSFLNDKEKKKIGSKENAILEFYQQFACVGGDPVVSESLCKELQKKFFQQRCELGRVGRRNMNRRLNLDIPQNNTFLLPRDILAAADHLIGMKFGMGTLDDMNHLKNKRIRSVADLLQDQLGLALVRLENMVRGTICGAIKHKLIPTPQNLVTSTPLTTTYESFFGLHPLSQVLDRTNPLTQIVHGRKSSYLGPGGLTGRTASFRIRDIHPSHYGRICPIDTSEGINVGLI 843
            GGRLEL+I RKA I AR+ RK+KISIL+L SAMGSNLREILENVCYPEIFLSFLNDKEKKKIGSKENAILEFYQQFACVGGDPV SESLCKELQKKFFQQRCELGR+GRRNMNRRLNLDIPQNNTFLLPRDILAAADHLIGMKFGMGTLDDMNHLKNKRIRSVADLLQDQ GLALVRLENMV+GTICGAI+HKLIPTPQNLVTSTPLTTTYESFFGLHPLSQVLDRTNPLTQIVHGRK SYLGPGGLTGRTASFRIRDIHPSHYGRICPIDTSEGINVGLI
Sbjct:  155 GGRLELEIDRKARIWARVSRKQKISILVLLSAMGSNLREILENVCYPEIFLSFLNDKEKKKIGSKENAILEFYQQFACVGGDPVFSESLCKELQKKFFQQRCELGRIGRRNMNRRLNLDIPQNNTFLLPRDILAAADHLIGMKFGMGTLDDMNHLKNKRIRSVADLLQDQFGLALVRLENMVKGTICGAIRHKLIPTPQNLVTSTPLTTTYESFFGLHPLSQVLDRTNPLTQIVHGRKLSYLGPGGLTGRTASFRIRDIHPSHYGRICPIDTSEGINVGLI 435
[Close]
BLAST of mRNA_M-pyrifera_M_contig85665.19968.1 vs. uniprot
Match: A0A4S4EXE5_CAMSI (DNA-directed RNA polymerase n=1 Tax=Camellia sinensis var. sinensis TaxID=542762 RepID=A0A4S4EXE5_CAMSI)

HSP 1 Score: 519 bits (1337), Expect = 3.060e-183
Identity = 262/281 (93.24%), Postives = 270/281 (96.09%), Query Frame = 1 
Query:    1 GGRLELKIARKAMIRARLKRKKKISILLLSSAMGSNLREILENVCYPEIFLSFLNDKEKKKIGSKENAILEFYQQFACVGGDPVVSESLCKELQKKFFQQRCELGRVGRRNMNRRLNLDIPQNNTFLLPRDILAAADHLIGMKFGMGTLDDMNHLKNKRIRSVADLLQDQLGLALVRLENMVRGTICGAIKHKLIPTPQNLVTSTPLTTTYESFFGLHPLSQVLDRTNPLTQIVHGRKSSYLGPGGLTGRTASFRIRDIHPSHYGRICPIDTSEGINVGLI 843
            GGR EL+I RKA I AR+ RK+KISIL+LSSAMGSNLR+ILENVCYPEIFLSFLNDKEKKKIGSKENAILEFYQQFACVGG+PV SESLCKELQKKFFQQRCELG +GRRNMNRRL LDIPQNNTFLLPRDILAA DHLIGMKFGMGTLDDMNHLKNKRIRSVADLLQDQLGLALVRLEN VRGTICGAI+HKLIPTPQNLVTSTPLTTTYESFFGLHPLSQVLDRTNPLTQIVHGRK SYLGPGGLTGRTASFRIRDIHPSHYGRICPIDTSEGINVGLI
Sbjct:   49 GGRSELEIDRKARIWARVSRKQKISILVLSSAMGSNLRKILENVCYPEIFLSFLNDKEKKKIGSKENAILEFYQQFACVGGNPVFSESLCKELQKKFFQQRCELGSIGRRNMNRRLTLDIPQNNTFLLPRDILAAVDHLIGMKFGMGTLDDMNHLKNKRIRSVADLLQDQLGLALVRLENGVRGTICGAIRHKLIPTPQNLVTSTPLTTTYESFFGLHPLSQVLDRTNPLTQIVHGRKLSYLGPGGLTGRTASFRIRDIHPSHYGRICPIDTSEGINVGLI 329
[Close]
BLAST of mRNA_M-pyrifera_M_contig85665.19968.1 vs. uniprot
Match: A0A1P8LDQ9_CITLA (DNA-directed RNA polymerase n=2 Tax=fabids TaxID=91835 RepID=A0A1P8LDQ9_CITLA)

HSP 1 Score: 523 bits (1347), Expect = 5.330e-183
Identity = 261/281 (92.88%), Postives = 273/281 (97.15%), Query Frame = 1 
Query:    1 GGRLELKIARKAMIRARLKRKKKISILLLSSAMGSNLREILENVCYPEIFLSFLNDKEKKKIGSKENAILEFYQQFACVGGDPVVSESLCKELQKKFFQQRCELGRVGRRNMNRRLNLDIPQNNTFLLPRDILAAADHLIGMKFGMGTLDDMNHLKNKRIRSVADLLQDQLGLALVRLENMVRGTICGAIKHKLIPTPQNLVTSTPLTTTYESFFGLHPLSQVLDRTNPLTQIVHGRKSSYLGPGGLTGRTASFRIRDIHPSHYGRICPIDTSEGINVGLI 843
            GGRLEL+I RKA I AR+ RK+KISIL+LSSAMGSNLREILENVCYPEIFLSFLNDKEK KIGSKENAILEFYQQF+CVGGDPV SESLCKELQKKFFQQRCELGR+GRRN+N+RLNLDIP+NNTFLLPRDILAAADHLIG+KFGMGTLDDMNHLKNKRIRSVADLLQDQ GLALVRLENMVRGTICGAI+HKLIPTPQNLVTSTPLTTT+ESFFGLHPLSQVLDRTNPLTQIVHGRK SYLGPGGLTGRTASFRIRDIHPSHYGRICPIDTSEGINVGLI
Sbjct:  155 GGRLELEIDRKARIWARVSRKQKISILVLSSAMGSNLREILENVCYPEIFLSFLNDKEKNKIGSKENAILEFYQQFSCVGGDPVFSESLCKELQKKFFQQRCELGRIGRRNLNQRLNLDIPENNTFLLPRDILAAADHLIGLKFGMGTLDDMNHLKNKRIRSVADLLQDQFGLALVRLENMVRGTICGAIRHKLIPTPQNLVTSTPLTTTFESFFGLHPLSQVLDRTNPLTQIVHGRKLSYLGPGGLTGRTASFRIRDIHPSHYGRICPIDTSEGINVGLI 435
[Close]
BLAST of mRNA_M-pyrifera_M_contig85665.19968.1 vs. uniprot
Match: E3W0I5_PRUPE (DNA-directed RNA polymerase subunit beta n=315 Tax=rosids TaxID=71275 RepID=E3W0I5_PRUPE)

HSP 1 Score: 540 bits (1391), Expect = 9.700e-183
Identity = 273/281 (97.15%), Postives = 277/281 (98.58%), Query Frame = 1 
Query:    1 GGRLELKIARKAMIRARLKRKKKISILLLSSAMGSNLREILENVCYPEIFLSFLNDKEKKKIGSKENAILEFYQQFACVGGDPVVSESLCKELQKKFFQQRCELGRVGRRNMNRRLNLDIPQNNTFLLPRDILAAADHLIGMKFGMGTLDDMNHLKNKRIRSVADLLQDQLGLALVRLENMVRGTICGAIKHKLIPTPQNLVTSTPLTTTYESFFGLHPLSQVLDRTNPLTQIVHGRKSSYLGPGGLTGRTASFRIRDIHPSHYGRICPIDTSEGINVGLI 843
            GGRLEL+I RKA I AR+ RK+KISIL+LSSAMGSNLREILENVCYPEIFLSFLNDKEKKKIGSKENAILEFYQQFACVGGDPVVSESLCKELQKKFFQQRCELGRVGRRNMNRRLNLDIPQNNTFLLPRDILAAADHLIGMKFGMGTLDDMNHLKNKRIRSVADLLQDQLGLALVRLENMVRGTICGAIKHKLIPTPQNLVTSTPLTTTYESFFGLHPLSQVLDRTNPLTQIVHGRKSSYLGPGGLTGRTASFRIRDIHPSHYGRICPIDTSEGINVGLI
Sbjct:  155 GGRLELEIDRKARIWARVSRKQKISILVLSSAMGSNLREILENVCYPEIFLSFLNDKEKKKIGSKENAILEFYQQFACVGGDPVVSESLCKELQKKFFQQRCELGRVGRRNMNRRLNLDIPQNNTFLLPRDILAAADHLIGMKFGMGTLDDMNHLKNKRIRSVADLLQDQLGLALVRLENMVRGTICGAIKHKLIPTPQNLVTSTPLTTTYESFFGLHPLSQVLDRTNPLTQIVHGRKSSYLGPGGLTGRTASFRIRDIHPSHYGRICPIDTSEGINVGLI 435
[Close]
BLAST of mRNA_M-pyrifera_M_contig85665.19968.1 vs. uniprot
Match: U5INN4_LAMAM (DNA-directed RNA polymerase (Fragment) n=9 Tax=Lamium TaxID=53158 RepID=U5INN4_LAMAM)

HSP 1 Score: 516 bits (1330), Expect = 3.200e-182
Identity = 259/281 (92.17%), Postives = 271/281 (96.44%), Query Frame = 1 
Query:    1 GGRLELKIARKAMIRARLKRKKKISILLLSSAMGSNLREILENVCYPEIFLSFLNDKEKKKIGSKENAILEFYQQFACVGGDPVVSESLCKELQKKFFQQRCELGRVGRRNMNRRLNLDIPQNNTFLLPRDILAAADHLIGMKFGMGTLDDMNHLKNKRIRSVADLLQDQLGLALVRLENMVRGTICGAIKHKLIPTPQNLVTSTPLTTTYESFFGLHPLSQVLDRTNPLTQIVHGRKSSYLGPGGLTGRTASFRIRDIHPSHYGRICPIDTSEGINVGLI 843
            GGR EL+I RKA I AR+ RK+KISIL+LSSAMGSNLREIL+NV YPEIFLSFLNDKE+KKIGSKENAILEFYQQFACVGGDPV SESLCKELQKKFFQQRCELG++GRRNMNRRLNLDIP NNTFLLPRDILAAADHLIG+KFGMGTLDDMNHLKNKRIRSVADLLQDQ GL+LVRLEN+VRGTICGAI+HKLIPTPQNLVTSTPLTTTYESFFGLHPLSQVLDRTNPLTQIVHGRK SYLGPGGLTGRTASFRIRDIHPSHYGRICPIDTSEGINVGLI
Sbjct:  131 GGRSELEIDRKARIWARVSRKQKISILVLSSAMGSNLREILDNVYYPEIFLSFLNDKERKKIGSKENAILEFYQQFACVGGDPVFSESLCKELQKKFFQQRCELGKIGRRNMNRRLNLDIPPNNTFLLPRDILAAADHLIGLKFGMGTLDDMNHLKNKRIRSVADLLQDQFGLSLVRLENVVRGTICGAIRHKLIPTPQNLVTSTPLTTTYESFFGLHPLSQVLDRTNPLTQIVHGRKLSYLGPGGLTGRTASFRIRDIHPSHYGRICPIDTSEGINVGLI 411
[Close]
BLAST of mRNA_M-pyrifera_M_contig85665.19968.1 vs. uniprot
Match: U5IP56_9LAMI (DNA-directed RNA polymerase (Fragment) n=17 Tax=lamiids TaxID=91888 RepID=U5IP56_9LAMI)

HSP 1 Score: 516 bits (1329), Expect = 4.540e-182
Identity = 259/281 (92.17%), Postives = 270/281 (96.09%), Query Frame = 1 
Query:    1 GGRLELKIARKAMIRARLKRKKKISILLLSSAMGSNLREILENVCYPEIFLSFLNDKEKKKIGSKENAILEFYQQFACVGGDPVVSESLCKELQKKFFQQRCELGRVGRRNMNRRLNLDIPQNNTFLLPRDILAAADHLIGMKFGMGTLDDMNHLKNKRIRSVADLLQDQLGLALVRLENMVRGTICGAIKHKLIPTPQNLVTSTPLTTTYESFFGLHPLSQVLDRTNPLTQIVHGRKSSYLGPGGLTGRTASFRIRDIHPSHYGRICPIDTSEGINVGLI 843
            GGR EL+I RKA I AR+ RK+KISIL+LSSAMGSNLREIL+NV YPEIFLSFLNDKE+KKIGSKENAILEFYQQFACVGGDPV SESLCKELQKKFFQQRCELGR+GRRNMNRRLNLDIP NNTFLLPRDILAAADHLIG+KFGMGTLDDMNHLKNKRIRSVADLLQDQ GL+L RLEN+VRGTICGAI+HKLIPTPQNLVTSTPLTTTYESFFGLHPLSQVLDRTNPLTQIVHGRK SYLGPGGLTGRTASFRIRDIHPSHYGRICPIDTSEGINVGLI
Sbjct:  131 GGRSELEIDRKARIWARVSRKQKISILVLSSAMGSNLREILDNVYYPEIFLSFLNDKERKKIGSKENAILEFYQQFACVGGDPVFSESLCKELQKKFFQQRCELGRIGRRNMNRRLNLDIPPNNTFLLPRDILAAADHLIGLKFGMGTLDDMNHLKNKRIRSVADLLQDQFGLSLARLENVVRGTICGAIRHKLIPTPQNLVTSTPLTTTYESFFGLHPLSQVLDRTNPLTQIVHGRKLSYLGPGGLTGRTASFRIRDIHPSHYGRICPIDTSEGINVGLI 411
[Close]
BLAST of mRNA_M-pyrifera_M_contig85665.19968.1 vs. uniprot
Match: V9Z7T2_9MAGN (DNA-directed RNA polymerase (Fragment) n=1 Tax=Exbucklandia populnea TaxID=54453 RepID=V9Z7T2_9MAGN)

HSP 1 Score: 528 bits (1361), Expect = 1.090e-181
Identity = 266/281 (94.66%), Postives = 273/281 (97.15%), Query Frame = 1 
Query:    1 GGRLELKIARKAMIRARLKRKKKISILLLSSAMGSNLREILENVCYPEIFLSFLNDKEKKKIGSKENAILEFYQQFACVGGDPVVSESLCKELQKKFFQQRCELGRVGRRNMNRRLNLDIPQNNTFLLPRDILAAADHLIGMKFGMGTLDDMNHLKNKRIRSVADLLQDQLGLALVRLENMVRGTICGAIKHKLIPTPQNLVTSTPLTTTYESFFGLHPLSQVLDRTNPLTQIVHGRKSSYLGPGGLTGRTASFRIRDIHPSHYGRICPIDTSEGINVGLI 843
            GGRLEL+I RKA I AR+ RK+KISIL+LSSAMGSNLREILENVCYPEIFLSFLNDKEKKKIGSKENAILEFYQQFACVGGDPV SESLCKELQKKFFQQRCELGR+GRRNMNRRLNLDIPQNNTFLLPRDILAAADHLIGMKFGMGTL+DMNHLKNKRIRSVADLLQDQ G ALVRLEN VRGTICGAI+HKLIPTPQNLVTSTPLTTTYESFFGLHPLSQVLDRTNPLTQIVHGRKSSYLGPGGLTGRTASFRIRDIHPSHYGRICPIDTSEGINVGLI
Sbjct:  136 GGRLELEIDRKARIWARVSRKQKISILVLSSAMGSNLREILENVCYPEIFLSFLNDKEKKKIGSKENAILEFYQQFACVGGDPVFSESLCKELQKKFFQQRCELGRIGRRNMNRRLNLDIPQNNTFLLPRDILAAADHLIGMKFGMGTLNDMNHLKNKRIRSVADLLQDQFGSALVRLENAVRGTICGAIRHKLIPTPQNLVTSTPLTTTYESFFGLHPLSQVLDRTNPLTQIVHGRKSSYLGPGGLTGRTASFRIRDIHPSHYGRICPIDTSEGINVGLI 416
[Close]
BLAST of mRNA_M-pyrifera_M_contig85665.19968.1 vs. uniprot
Match: A0A1V0J717_9ROSA (DNA-directed RNA polymerase subunit beta n=69 Tax=Maleae TaxID=721813 RepID=A0A1V0J717_9ROSA)

HSP 1 Score: 536 bits (1381), Expect = 2.890e-181
Identity = 271/281 (96.44%), Postives = 275/281 (97.86%), Query Frame = 1 
Query:    1 GGRLELKIARKAMIRARLKRKKKISILLLSSAMGSNLREILENVCYPEIFLSFLNDKEKKKIGSKENAILEFYQQFACVGGDPVVSESLCKELQKKFFQQRCELGRVGRRNMNRRLNLDIPQNNTFLLPRDILAAADHLIGMKFGMGTLDDMNHLKNKRIRSVADLLQDQLGLALVRLENMVRGTICGAIKHKLIPTPQNLVTSTPLTTTYESFFGLHPLSQVLDRTNPLTQIVHGRKSSYLGPGGLTGRTASFRIRDIHPSHYGRICPIDTSEGINVGLI 843
            GGRLEL+I RKA I AR+ RK+KISIL+L SAMGSNLREILENVCYPEIFLSFLNDKEKKKIGSKENAILEFYQQFACVGGDPVVSESLCKELQKKFFQQRCELGRVGRRNMNRRLNLDIPQNNTFLLPRDILAAADHLIGMKFGMGTLDDMNHLKNKRIRSVADLLQDQ GLALVRLENMVRGTICGAIKHKLIPTPQNLVTSTPLTTTYESFFGLHPLSQVLDRTNPLTQIVHGRKSSYLGPGGLTGRTASFRIRDIHPSHYGRICPIDTSEGINVGLI
Sbjct:  155 GGRLELEIDRKARIWARVSRKQKISILVLLSAMGSNLREILENVCYPEIFLSFLNDKEKKKIGSKENAILEFYQQFACVGGDPVVSESLCKELQKKFFQQRCELGRVGRRNMNRRLNLDIPQNNTFLLPRDILAAADHLIGMKFGMGTLDDMNHLKNKRIRSVADLLQDQFGLALVRLENMVRGTICGAIKHKLIPTPQNLVTSTPLTTTYESFFGLHPLSQVLDRTNPLTQIVHGRKSSYLGPGGLTGRTASFRIRDIHPSHYGRICPIDTSEGINVGLI 435
[Close]
BLAST of mRNA_M-pyrifera_M_contig85665.19968.1 vs. uniprot
Match: A0A1V0IQ30_9ROSA (DNA-directed RNA polymerase subunit beta n=11 Tax=Maleae TaxID=721813 RepID=A0A1V0IQ30_9ROSA)

HSP 1 Score: 536 bits (1381), Expect = 2.890e-181
Identity = 271/281 (96.44%), Postives = 275/281 (97.86%), Query Frame = 1 
Query:    1 GGRLELKIARKAMIRARLKRKKKISILLLSSAMGSNLREILENVCYPEIFLSFLNDKEKKKIGSKENAILEFYQQFACVGGDPVVSESLCKELQKKFFQQRCELGRVGRRNMNRRLNLDIPQNNTFLLPRDILAAADHLIGMKFGMGTLDDMNHLKNKRIRSVADLLQDQLGLALVRLENMVRGTICGAIKHKLIPTPQNLVTSTPLTTTYESFFGLHPLSQVLDRTNPLTQIVHGRKSSYLGPGGLTGRTASFRIRDIHPSHYGRICPIDTSEGINVGLI 843
            GGRLEL+I RKA I AR+ RK+KISIL+L SAMGSNLREILENVCYPEIFLSFLNDKEKKKIGSKENAILEFYQQFACVGGDPVVSESLCKELQKKFFQQRCELGRVGRRNMNRRLNLDIPQNNTFLLPRDILAAADHLIGMKFGMGTLDDMNHLKNKRIRSVADLLQDQ GLALVRLENMVRGTICGAIKHKLIPTPQNLVTSTPLTTTYESFFGLHPLSQVLDRTNPLTQIVHGRKSSYLGPGGLTGRTASFRIRDIHPSHYGRICPIDTSEGINVGLI
Sbjct:  155 GGRLELEIDRKARIWARVSRKQKISILVLLSAMGSNLREILENVCYPEIFLSFLNDKEKKKIGSKENAILEFYQQFACVGGDPVVSESLCKELQKKFFQQRCELGRVGRRNMNRRLNLDIPQNNTFLLPRDILAAADHLIGMKFGMGTLDDMNHLKNKRIRSVADLLQDQFGLALVRLENMVRGTICGAIKHKLIPTPQNLVTSTPLTTTYESFFGLHPLSQVLDRTNPLTQIVHGRKSSYLGPGGLTGRTASFRIRDIHPSHYGRICPIDTSEGINVGLI 435
[Close]
BLAST of mRNA_M-pyrifera_M_contig85665.19968.1 vs. uniprot
Match: A0A1V0INB1_9ROSA (DNA-directed RNA polymerase subunit beta n=8 Tax=Photinia TaxID=23199 RepID=A0A1V0INB1_9ROSA)

HSP 1 Score: 536 bits (1381), Expect = 2.890e-181
Identity = 271/281 (96.44%), Postives = 275/281 (97.86%), Query Frame = 1 
Query:    1 GGRLELKIARKAMIRARLKRKKKISILLLSSAMGSNLREILENVCYPEIFLSFLNDKEKKKIGSKENAILEFYQQFACVGGDPVVSESLCKELQKKFFQQRCELGRVGRRNMNRRLNLDIPQNNTFLLPRDILAAADHLIGMKFGMGTLDDMNHLKNKRIRSVADLLQDQLGLALVRLENMVRGTICGAIKHKLIPTPQNLVTSTPLTTTYESFFGLHPLSQVLDRTNPLTQIVHGRKSSYLGPGGLTGRTASFRIRDIHPSHYGRICPIDTSEGINVGLI 843
            GGRLEL+I RKA I AR+ RK+KISIL+L SAMGSNLREILENVCYPEIFLSFLNDKEKKKIGSKENAILEFYQQFACVGGDPVVSESLCKELQKKFFQQRCELGRVGRRNMNRRLNLDIPQNNTFLLPRDILAAADHLIGMKFGMGTLDDMNHLKNKRIRSVADLLQDQ GLALVRLENMVRGTICGAIKHKLIPTPQNLVTSTPLTTTYESFFGLHPLSQVLDRTNPLTQIVHGRKSSYLGPGGLTGRTASFRIRDIHPSHYGRICPIDTSEGINVGLI
Sbjct:  155 GGRLELEIDRKARIWARVSRKQKISILVLLSAMGSNLREILENVCYPEIFLSFLNDKEKKKIGSKENAILEFYQQFACVGGDPVVSESLCKELQKKFFQQRCELGRVGRRNMNRRLNLDIPQNNTFLLPRDILAAADHLIGMKFGMGTLDDMNHLKNKRIRSVADLLQDQFGLALVRLENMVRGTICGAIKHKLIPTPQNLVTSTPLTTTYESFFGLHPLSQVLDRTNPLTQIVHGRKSSYLGPGGLTGRTASFRIRDIHPSHYGRICPIDTSEGINVGLI 435
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig85665.19968.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A5Q0UYQ1_9FABA6.100e-18494.66DNA-directed RNA polymerase (Fragment) n=3 Tax=Mes... [more]
A0A4S4EXE5_CAMSI3.060e-18393.24DNA-directed RNA polymerase n=1 Tax=Camellia sinen... [more]
A0A1P8LDQ9_CITLA5.330e-18392.88DNA-directed RNA polymerase n=2 Tax=fabids TaxID=9... [more]
E3W0I5_PRUPE9.700e-18397.15DNA-directed RNA polymerase subunit beta n=315 Tax... [more]
U5INN4_LAMAM3.200e-18292.17DNA-directed RNA polymerase (Fragment) n=9 Tax=Lam... [more]
U5IP56_9LAMI4.540e-18292.17DNA-directed RNA polymerase (Fragment) n=17 Tax=la... [more]
V9Z7T2_9MAGN1.090e-18194.66DNA-directed RNA polymerase (Fragment) n=1 Tax=Exb... [more]
A0A1V0J717_9ROSA2.890e-18196.44DNA-directed RNA polymerase subunit beta n=69 Tax=... [more]
A0A1V0IQ30_9ROSA2.890e-18196.44DNA-directed RNA polymerase subunit beta n=11 Tax=... [more]
A0A1V0INB1_9ROSA2.890e-18196.44DNA-directed RNA polymerase subunit beta n=8 Tax=P... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig85665contigM-pyrifera_M_contig85665:1..843 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score519.2
Seed ortholog evalue1.2e-144
Seed eggNOG ortholog4641.GSMUA_AchrUn_randomP21780_001
Hectar predicted targeting categorymitochondrion
EggNOG free text desc.Dna-directed rna polymerase
EggNOG OGs37HVP@33090,3G72V@35493,3KRI7@4447,COG0085@1,KOG0214@2759
COG Functional cat.K
Best tax levelLiliopsida
Best eggNOG OGNA|NA|NA
Exons1
Model size843
Cds size843
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816766.2938929-CDS-M-pyrifera_M_contig85665:0..8431622816766.2938929-CDS-M-pyrifera_M_contig85665:0..843Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig85665 1..843 -
1692278165.6714492-CDS-M-pyrifera_M_contig85665:0..8431692278165.6714492-CDS-M-pyrifera_M_contig85665:0..843Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig85665 1..843 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig85665.19968.1prot_M-pyrifera_M_contig85665.19968.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig85665 1..843 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig85665.19968.1

>prot_M-pyrifera_M_contig85665.19968.1 ID=prot_M-pyrifera_M_contig85665.19968.1|Name=mRNA_M-pyrifera_M_contig85665.19968.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=281bp
GGRLELKIARKAMIRARLKRKKKISILLLSSAMGSNLREILENVCYPEIF
LSFLNDKEKKKIGSKENAILEFYQQFACVGGDPVVSESLCKELQKKFFQQ
RCELGRVGRRNMNRRLNLDIPQNNTFLLPRDILAAADHLIGMKFGMGTLD
DMNHLKNKRIRSVADLLQDQLGLALVRLENMVRGTICGAIKHKLIPTPQN
LVTSTPLTTTYESFFGLHPLSQVLDRTNPLTQIVHGRKSSYLGPGGLTGR
TASFRIRDIHPSHYGRICPIDTSEGINVGLI
back to top

mRNA from alignment at M-pyrifera_M_contig85665:1..843-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig85665.19968.1 ID=mRNA_M-pyrifera_M_contig85665.19968.1|Name=mRNA_M-pyrifera_M_contig85665.19968.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=843bp|location=Sequence derived from alignment at M-pyrifera_M_contig85665:1..843- (Macrocystis pyrifera P11B4 male)
GGAGGAAGATTGGAATTAAAGATTGCTAGAAAAGCCATGATACGGGCTCG
TTTAAAAAGAAAAAAAAAAATATCTATTCTACTTCTATCATCAGCTATGG
GTTCAAATCTAAGAGAAATTCTAGAGAATGTTTGCTACCCTGAGATTTTC
TTGTCTTTCCTGAATGATAAAGAGAAAAAAAAAATTGGGTCAAAAGAAAA
CGCCATTTTGGAGTTTTATCAACAATTTGCTTGTGTAGGCGGGGATCCGG
TAGTTTCTGAATCCTTATGTAAGGAATTACAAAAGAAATTCTTTCAACAA
AGATGTGAATTAGGAAGGGTTGGTCGACGAAATATGAACCGAAGACTAAA
TCTTGATATACCTCAGAACAATACATTTTTGTTACCGCGAGATATATTGG
CAGCTGCGGATCATTTGATTGGAATGAAATTTGGAATGGGTACACTTGAT
GATATGAATCATTTGAAAAATAAACGTATTCGTTCTGTAGCGGATCTCTT
ACAAGATCAATTAGGATTGGCTCTGGTTCGTTTAGAAAATATGGTTAGAG
GGACTATATGCGGAGCAATTAAGCATAAATTGATACCGACTCCTCAGAAT
TTGGTAACTTCAACTCCATTAACAACCACTTATGAATCTTTTTTCGGATT
ACACCCATTATCTCAAGTTTTGGATCGAACAAATCCATTGACACAAATAG
TTCATGGGAGAAAATCGAGTTATCTGGGCCCTGGAGGATTGACAGGGCGA
ACTGCTAGTTTTCGGATACGAGATATCCACCCTAGTCACTACGGGCGCAT
TTGCCCCATTGACACGTCTGAAGGAATCAACGTTGGACTTATT
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig85665:1..843-

>mRNA_M-pyrifera_M_contig85665.19968.1 ID=mRNA_M-pyrifera_M_contig85665.19968.1|Name=mRNA_M-pyrifera_M_contig85665.19968.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1686bp|location=Sequence derived from alignment at M-pyrifera_M_contig85665:1..843- (Macrocystis pyrifera P11B4 male)
GGAGGAAGATTGGAATTAAAGATTGCTAGAAAAGCCATGATACGGGCTCG
TTTAAAAAGAAAAAAAAAAATATCTATTCTACTTCTATCATCAGCTATGG
GTTCAAATCTAAGAGAAATTCTAGAGAATGTTTGCTACCCTGAGATTTTC
TTGTCTTTCCTGAATGATAAAGAGAAAAAAAAAATTGGGTCAAAAGAAAA
CGCCATTTTGGAGTTTTATCAACAATTTGCTTGTGTAGGCGGGGATCCGG
TAGTTTCTGAATCCTTATGTAAGGAATTACAAAAGAAATTCTTTCAACAA
AGATGTGAATTAGGAAGGGTTGGTCGACGAAATATGAACCGAAGACTAAA
TCTTGATATACCTCAGAACAATACATTTTTGTTACCGCGAGATATATTGG
CAGCTGCGGATCATTTGATTGGAATGAAATTTGGAATGGGTACACTTGAT
GATATGAATCATTTGAAAAATAAACGTATTCGTTCTGTAGCGGATCTCTT
ACAAGATCAATTAGGATTGGCTCTGGTTCGTTTAGAAAATATGGTTAGAG
GGACTATATGCGGAGCAATTAAGCATAAATTGATACCGACTCCTCAGAAT
TTGGTAACTTCAACTCCATTAACAACCACTTATGAATCTTTTTTCGGATT
ACACCCATTATCTCAAGTTTTGGATCGAACAAATCCATTGACACAAATAG
TTCATGGGAGAAAATCGAGTTATCTGGGCCCTGGAGGATTGACAGGGCGA
ACTGCTAGTTTTCGGATACGAGATATCCACCCTAGTCACTACGGGCGCAT
TTGCCCCATTGACACGTCTGAAGGAATCAACGTTGGACTTATTGGAGGAA
GATTGGAATTAAAGATTGCTAGAAAAGCCATGATACGGGCTCGTTTAAAA
AGAAAAAAAAAAATATCTATTCTACTTCTATCATCAGCTATGGGTTCAAA
TCTAAGAGAAATTCTAGAGAATGTTTGCTACCCTGAGATTTTCTTGTCTT
TCCTGAATGATAAAGAGAAAAAAAAAATTGGGTCAAAAGAAAACGCCATT
TTGGAGTTTTATCAACAATTTGCTTGTGTAGGCGGGGATCCGGTAGTTTC
TGAATCCTTATGTAAGGAATTACAAAAGAAATTCTTTCAACAAAGATGTG
AATTAGGAAGGGTTGGTCGACGAAATATGAACCGAAGACTAAATCTTGAT
ATACCTCAGAACAATACATTTTTGTTACCGCGAGATATATTGGCAGCTGC
GGATCATTTGATTGGAATGAAATTTGGAATGGGTACACTTGATGATATGA
ATCATTTGAAAAATAAACGTATTCGTTCTGTAGCGGATCTCTTACAAGAT
CAATTAGGATTGGCTCTGGTTCGTTTAGAAAATATGGTTAGAGGGACTAT
ATGCGGAGCAATTAAGCATAAATTGATACCGACTCCTCAGAATTTGGTAA
CTTCAACTCCATTAACAACCACTTATGAATCTTTTTTCGGATTACACCCA
TTATCTCAAGTTTTGGATCGAACAAATCCATTGACACAAATAGTTCATGG
GAGAAAATCGAGTTATCTGGGCCCTGGAGGATTGACAGGGCGAACTGCTA
GTTTTCGGATACGAGATATCCACCCTAGTCACTACGGGCGCATTTGCCCC
ATTGACACGTCTGAAGGAATCAACGTTGGACTTATT
back to top