mRNA_M-pyrifera_M_contig85589.19950.1 (mRNA) Macrocystis pyrifera P11B4 male
Overview
Homology
BLAST of mRNA_M-pyrifera_M_contig85589.19950.1 vs. uniprot
Match: UPI00177E4018 (ATP-dependent zinc protease n=1 Tax=Pseudomonas sp. PDM14 TaxID=2769288 RepID=UPI00177E4018) HSP 1 Score: 61.2 bits (147), Expect = 8.450e-10 Identity = 28/62 (45.16%), Postives = 40/62 (64.52%), Query Frame = 1 Query: 13 LTGRPFTGALLGFVVAIVFVSPPAFALQKQRLGWIEWAWLQPGHIKVKTKLDTGAKTSSIHA 198 LT +P T +A++ +PP A +K+ GW+E +QP +I VK KLDTGA+TSS+HA Sbjct: 35 LTVKPITALTSALSLALLCAAPPLLAAEKKVFGWVEEGLIQPDNIAVKMKLDTGARTSSLHA 96
BLAST of mRNA_M-pyrifera_M_contig85589.19950.1 vs. uniprot
Match: UPI001CE0FBFA (ATP-dependent zinc protease n=1 Tax=Pseudomonas sp. PDM14 TaxID=2769288 RepID=UPI001CE0FBFA) HSP 1 Score: 56.2 bits (134), Expect = 3.490e-8 Identity = 24/48 (50.00%), Postives = 35/48 (72.92%), Query Frame = 1 Query: 55 VAIVFVSPPAFALQKQRLGWIEWAWLQPGHIKVKTKLDTGAKTSSIHA 198 +A++ +PP A +K+ GW+E +QP +I VK KLDTGA+TSS+HA Sbjct: 3 LALLCAAPPLLAAEKKVFGWVEEGLIQPDNIAVKMKLDTGARTSSLHA 50
BLAST of mRNA_M-pyrifera_M_contig85589.19950.1 vs. uniprot
Match: A0A3F2V958_9GAMM (ATP-dependent zinc protease n=2 Tax=unclassified Ketobacter TaxID=2639109 RepID=A0A3F2V958_9GAMM) HSP 1 Score: 55.8 bits (133), Expect = 1.140e-7 Identity = 31/69 (44.93%), Postives = 40/69 (57.97%), Query Frame = 1 Query: 22 RPFTGALLGFVVAIVFVSPPAFA----------LQKQRLGWIEWAWLQPGHIKVKTKLDTGAKTSSIHA 198 R G +L ++I+ PA+A +K LGW+E+ WL+P IK K KLDTGAKTSSIHA Sbjct: 6 RTIVGCIL---LSIIATHSPAYADGKSHDNHEIKEKVILGWLEFMWLKPWQIKTKAKLDTGAKTSSIHA 71
BLAST of mRNA_M-pyrifera_M_contig85589.19950.1 vs. uniprot
Match: A0A521REV8_9GAMM (Zn_protease domain-containing protein n=1 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A521REV8_9GAMM) HSP 1 Score: 53.5 bits (127), Expect = 4.930e-7 Identity = 27/59 (45.76%), Postives = 38/59 (64.41%), Query Frame = 1 Query: 22 RPFTGALLGFVVAIVFVSPPAFALQKQRLGWIEWAWLQPGHIKVKTKLDTGAKTSSIHA 198 R LL ++ I V P + + R+GW+E A+LQP ++V+ KLDTGAKTS+IHA Sbjct: 5 RSMKHGLLAILLTIYGVLP--LSAEPARVGWLEGAYLQPWGVRVRAKLDTGAKTSAIHA 61
BLAST of mRNA_M-pyrifera_M_contig85589.19950.1 vs. uniprot
Match: A0A1G0JPU3_9GAMM (Zn_protease domain-containing protein n=1 Tax=Gammaproteobacteria bacterium RIFCSPLOWO2_02_FULL_56_15 TaxID=1798298 RepID=A0A1G0JPU3_9GAMM) HSP 1 Score: 52.8 bits (125), Expect = 8.120e-7 Identity = 24/46 (52.17%), Postives = 33/46 (71.74%), Query Frame = 1 Query: 61 IVFVSPPAFALQKQRLGWIEWAWLQPGHIKVKTKLDTGAKTSSIHA 198 I+ S A + Q +GW+E A+LQP ++V+ KLDTGAKTS+IHA Sbjct: 3 IMVCSTLPLAAEPQTVGWLEGAYLQPWGVRVRAKLDTGAKTSTIHA 48
BLAST of mRNA_M-pyrifera_M_contig85589.19950.1 vs. uniprot
Match: A0A1G0JYJ4_9GAMM (Zn_protease domain-containing protein n=2 Tax=unclassified Gammaproteobacteria TaxID=33811 RepID=A0A1G0JYJ4_9GAMM) HSP 1 Score: 52.8 bits (125), Expect = 1.110e-6 Identity = 26/53 (49.06%), Postives = 37/53 (69.81%), Query Frame = 1 Query: 43 LGFVVAIVFVSPPAFALQKQRL-GWIEWAWLQPGHIKVKTKLDTGAKTSSIHA 198 + F+VA++ + A K + GW+E A+LQP ++VK KLDTGAKTS+IHA Sbjct: 19 VAFLVALLLMVTAMPATSKPEIVGWLEGAYLQPWGVRVKAKLDTGAKTSTIHA 71
BLAST of mRNA_M-pyrifera_M_contig85589.19950.1 vs. uniprot
Match: A0A2K9LPP6_9GAMM (Zn_protease domain-containing protein n=2 Tax=Ketobacter alkanivorans TaxID=1917421 RepID=A0A2K9LPP6_9GAMM) HSP 1 Score: 51.6 bits (122), Expect = 4.640e-6 Identity = 31/67 (46.27%), Postives = 39/67 (58.21%), Query Frame = 1 Query: 22 RPFTGALLGFVVAIVFVSPPAFAL--------QKQRLGWIEWAWLQPGHIKVKTKLDTGAKTSSIHA 198 +P T LL VA++F++ +K LGWIE LQP ++K K KLDTGAKTSSIHA Sbjct: 37 KPLTRCLL---VALMFMATSQLQAADNSKELSEKVILGWIENVHLQPSNLKAKAKLDTGAKTSSIHA 100
BLAST of mRNA_M-pyrifera_M_contig85589.19950.1 vs. uniprot
Match: UPI001B3D083C (Uncharacterized protein n=3 Tax=unclassified Methylocaldum TaxID=2622260 RepID=UPI001B3D083C) HSP 1 Score: 50.4 bits (119), Expect = 7.860e-6 Identity = 23/53 (43.40%), Postives = 35/53 (66.04%), Query Frame = 1 Query: 40 LLGFVVAIVFVSPPAFALQKQRLGWIEWAWLQPGHIKVKTKLDTGAKTSSIHA 198 LL +AI+ + +K +GW+E +L+P +I++ KLDTGAKTSS+HA Sbjct: 17 LLTLSIAILAAEAQSAVREKAVMGWLESVFLKPWNIRITAKLDTGAKTSSLHA 69
BLAST of mRNA_M-pyrifera_M_contig85589.19950.1 vs. uniprot
Match: A0A3L8C8P1_9GAMM (ATP-dependent zinc protease n=2 Tax=Gammaproteobacteria TaxID=1236 RepID=A0A3L8C8P1_9GAMM) HSP 1 Score: 50.4 bits (119), Expect = 9.530e-6 Identity = 24/35 (68.57%), Postives = 27/35 (77.14%), Query Frame = 1 Query: 94 QKQRLGWIEWAWLQPGHIKVKTKLDTGAKTSSIHA 198 +K LGWIE +LQP +K K KLDTGAKTSSIHA Sbjct: 37 EKLILGWIENIYLQPSGMKTKAKLDTGAKTSSIHA 71
BLAST of mRNA_M-pyrifera_M_contig85589.19950.1 vs. uniprot
Match: A0A2G2LUX9_9GAMM (Zn_protease domain-containing protein n=1 Tax=Methylophaga sp. TaxID=2024840 RepID=A0A2G2LUX9_9GAMM) HSP 1 Score: 49.7 bits (117), Expect = 1.530e-5 Identity = 27/48 (56.25%), Postives = 34/48 (70.83%), Query Frame = 1 Query: 67 FVSPPAFA-LQKQRL---GWIEWAWLQPGHIKVKTKLDTGAKTSSIHA 198 F+ AFA Q Q L GW+E LQPG+I+++ KLDTGAKTSS+HA Sbjct: 27 FIYKLAFADEQTQHLITAGWLEGVLLQPGNIRMRAKLDTGAKTSSLHA 74 The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig85589.19950.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90) Total hits: 19
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_M-pyrifera_M_contig85589.19950.1 >prot_M-pyrifera_M_contig85589.19950.1 ID=prot_M-pyrifera_M_contig85589.19950.1|Name=mRNA_M-pyrifera_M_contig85589.19950.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=66bp MRRLLTGRPFTGALLGFVVAIVFVSPPAFALQKQRLGWIEWAWLQPGHIKback to top mRNA from alignment at M-pyrifera_M_contig85589:2..199- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_M-pyrifera_M_contig85589.19950.1 ID=mRNA_M-pyrifera_M_contig85589.19950.1|Name=mRNA_M-pyrifera_M_contig85589.19950.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=198bp|location=Sequence derived from alignment at M-pyrifera_M_contig85589:2..199- (Macrocystis pyrifera P11B4 male)back to top Coding sequence (CDS) from alignment at M-pyrifera_M_contig85589:2..199- >mRNA_M-pyrifera_M_contig85589.19950.1 ID=mRNA_M-pyrifera_M_contig85589.19950.1|Name=mRNA_M-pyrifera_M_contig85589.19950.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=396bp|location=Sequence derived from alignment at M-pyrifera_M_contig85589:2..199- (Macrocystis pyrifera P11B4 male)back to top |