mRNA_M-pyrifera_M_contig109523.1994.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig109523.1994.1
Unique NamemRNA_M-pyrifera_M_contig109523.1994.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig109523.1994.1 vs. uniprot
Match: A0A7V8V1M6_9BACT (Uncharacterized protein n=1 Tax=Bremerella alba TaxID=980252 RepID=A0A7V8V1M6_9BACT)

HSP 1 Score: 193 bits (490), Expect = 1.350e-59
Identity = 90/91 (98.90%), Postives = 90/91 (98.90%), Query Frame = 1 
Query:    1 MVTGWGGIKPWTFGFFDYGTSWLTIDHKTVNFPINYTGDFITSTTPYTSEHPGGAMFLMCDGSVSFLTETMPLSLLKGMATRSNGEVISED 273
            MVTGWGGIKPWTFGFFDYGTSWLTIDHKTVNFPINYTGDFITSTTPYTSEHPGGAMFLMCDGSVSFLTETMPLSLLK MATRSNGEVISED
Sbjct:  222 MVTGWGGIKPWTFGFFDYGTSWLTIDHKTVNFPINYTGDFITSTTPYTSEHPGGAMFLMCDGSVSFLTETMPLSLLKRMATRSNGEVISED 312
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BLAST of mRNA_M-pyrifera_M_contig109523.1994.1 vs. uniprot
Match: UPI001CCFAF4F (DUF1559 domain-containing protein n=1 Tax=Bremerella volcania TaxID=2527984 RepID=UPI001CCFAF4F)

HSP 1 Score: 170 bits (431), Expect = 1.070e-50
Identity = 78/91 (85.71%), Postives = 84/91 (92.31%), Query Frame = 1 
Query:    1 MVTGWGGIKPWTFGFFDYGTSWLTIDHKTVNFPINYTGDFITSTTPYTSEHPGGAMFLMCDGSVSFLTETMPLSLLKGMATRSNGEVISED 273
            M TGWGGIKPW FG+F+Y  SWLTIDHKTVN+PINYTGDFITSTTPYTSEHPGGAMFLM DGSVSFLTETMPL LLK MATRSNGEVI+++
Sbjct:  222 MATGWGGIKPWVFGYFEYTGSWLTIDHKTVNYPINYTGDFITSTTPYTSEHPGGAMFLMGDGSVSFLTETMPLGLLKSMATRSNGEVIADN 312
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BLAST of mRNA_M-pyrifera_M_contig109523.1994.1 vs. uniprot
Match: UPI001CCD4319 (DUF1559 domain-containing protein n=1 Tax=Bremerella volcania TaxID=2527984 RepID=UPI001CCD4319)

HSP 1 Score: 125 bits (315), Expect = 2.340e-33
Identity = 56/90 (62.22%), Postives = 71/90 (78.89%), Query Frame = 1 
Query:    1 MVTGWGGIKPWTFGFFDYG-TSWLTIDHKTVNFPINYTGDFITSTTPYTSEHPGGAMFLMCDGSVSFLTETMPLSLLKGMATRSNGEVIS 267
            M TG+GG+KPW +G++ Y  T WL IDHK V +PINY G F T++TP++S HPGGAMF+MCDGSVSF  ETM L +LK +ATR NGEV++
Sbjct:  218 MTTGFGGLKPWVWGYYRYNATDWLMIDHKMVQYPINYIGSFGTNSTPFSSYHPGGAMFVMCDGSVSFKAETMNLDILKAIATRQNGEVVA 307
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BLAST of mRNA_M-pyrifera_M_contig109523.1994.1 vs. uniprot
Match: A0A7V8V3H4_9BACT (Uncharacterized protein n=2 Tax=Bremerella alba TaxID=980252 RepID=A0A7V8V3H4_9BACT)

HSP 1 Score: 124 bits (311), Expect = 7.940e-33
Identity = 59/89 (66.29%), Postives = 69/89 (77.53%), Query Frame = 1 
Query:    7 TGWGGIKPWTFGFFDYG-TSWLTIDHKTVNFPINYTGDFITSTTPYTSEHPGGAMFLMCDGSVSFLTETMPLSLLKGMATRSNGEVISE 270
            TG+GG+KPWT+G   Y  T  L IDHK V +PINY G + T+ TP++S HPGGAMF+MCDGSV FLTETMPL  LK  ATRSNGEV+SE
Sbjct:  213 TGFGGLKPWTWGSTTYSNTDRLLIDHKMVRYPINYPGSYGTNVTPFSSHHPGGAMFVMCDGSVKFLTETMPLDTLKATATRSNGEVVSE 301
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BLAST of mRNA_M-pyrifera_M_contig109523.1994.1 vs. uniprot
Match: UPI001E4621A4 (DUF1559 domain-containing protein n=1 Tax=unclassified Blastopirellula TaxID=2647022 RepID=UPI001E4621A4)

HSP 1 Score: 123 bits (309), Expect = 1.820e-32
Identity = 57/89 (64.04%), Postives = 65/89 (73.03%), Query Frame = 1 
Query:    1 MVTGWGGIKPWTFGFFDYG-TSWLTIDHKTVNFPINYTGDFITSTTPYTSEHPGGAMFLMCDGSVSFLTETMPLSLLKGMATRSNGEVI 264
               G+GGIKPW +G++ Y  T WL IDHK V FPINY+G F  S TP+TS HPGGAMF  CDGSV FL ETM L +LK MATR NGEV+
Sbjct:  218 QAQGFGGIKPWVWGYYRYSATEWLMIDHKMVQFPINYSGSFTNSNTPFTSYHPGGAMFANCDGSVVFLAETMNLDILKAMATRKNGEVV 306
[Close]
BLAST of mRNA_M-pyrifera_M_contig109523.1994.1 vs. uniprot
Match: A0A5C5V9N7_9BACT (Putative major pilin subunit n=2 Tax=Blastopirellula retiformator TaxID=2527970 RepID=A0A5C5V9N7_9BACT)

HSP 1 Score: 122 bits (306), Expect = 5.080e-32
Identity = 58/86 (67.44%), Postives = 65/86 (75.58%), Query Frame = 1 
Query:   10 GWGGIKPWTFGFFDYG-TSWLTIDHKTVNFPINYTGDFITSTTPYTSEHPGGAMFLMCDGSVSFLTETMPLSLLKGMATRSNGEVI 264
            G+GGIKPW +GF+ Y  T WL IDHK V FPINY+G F  S TP+TS HPGGAMF  CDGSV FL ET+ L +LK MATR NGEVI
Sbjct:  221 GFGGIKPWVWGFYRYNDTEWLMIDHKMVQFPINYSGAFTNSNTPFTSYHPGGAMFANCDGSVIFLPETLNLDILKAMATRKNGEVI 306
[Close]
BLAST of mRNA_M-pyrifera_M_contig109523.1994.1 vs. uniprot
Match: A0A2S8FNQ1_9BACT (Prepilin-type cleavage/methylation domain-containing protein n=2 Tax=Blastopirellula marina TaxID=124 RepID=A0A2S8FNQ1_9BACT)

HSP 1 Score: 122 bits (305), Expect = 7.450e-32
Identity = 58/91 (63.74%), Postives = 69/91 (75.82%), Query Frame = 1 
Query:    1 MVTGWGGIKPWTFGFFDYG-TSWLTIDHKTVNFPINYTGDFITSTTPYTSEHPGGAMFLMCDGSVSFLTETMPLSLLKGMATRSNGEVISE 270
            MV+G+GG+KPW +GF+ Y  T WL IDHK V FPINY G F T++TP+ S HPGGAMF M DGSVSFL ETM L +LK +AT+ N EVI E
Sbjct:  220 MVSGFGGLKPWVWGFYRYSDTDWLMIDHKMVQFPINYRGVFTTNSTPFGSYHPGGAMFAMSDGSVSFLAETMRLDVLKALATKKNQEVIPE 310
[Close]
BLAST of mRNA_M-pyrifera_M_contig109523.1994.1 vs. uniprot
Match: A4A1R3_9BACT (Uncharacterized protein n=2 Tax=Blastopirellula marina TaxID=124 RepID=A4A1R3_9BACT)

HSP 1 Score: 122 bits (305), Expect = 7.750e-32
Identity = 59/90 (65.56%), Postives = 65/90 (72.22%), Query Frame = 1 
Query:    1 MVTGWGGIKPWTFGFFDYG-TSWLTIDHKTVNFPINYTGDFITSTTPYTSEHPGGAMFLMCDGSVSFLTETMPLSLLKGMATRSNGEVIS 267
            +V+G  G+KPW  GF+ Y  TSWLTIDHKT+ FPINY G F  + TPY S HPGGAMF  CDGSVSF  ETM L  LK  ATR NGEVIS
Sbjct:  222 IVSGLTGLKPWVLGFYRYSSTSWLTIDHKTIQFPINYQGQFGYNLTPYASYHPGGAMFAKCDGSVSFFAETMSLDTLKYYATRKNGEVIS 311
[Close]
BLAST of mRNA_M-pyrifera_M_contig109523.1994.1 vs. uniprot
Match: A0A356A6L3_9PLAN (Prepilin-type cleavage/methylation domain-containing protein n=5 Tax=Planctomycetaceae TaxID=126 RepID=A0A356A6L3_9PLAN)

HSP 1 Score: 121 bits (304), Expect = 1.030e-31
Identity = 55/91 (60.44%), Postives = 69/91 (75.82%), Query Frame = 1 
Query:    1 MVTGWGGIKPWTFGFFDYGTS-WLTIDHKTVNFPINYTGDFITSTTPYTSEHPGGAMFLMCDGSVSFLTETMPLSLLKGMATRSNGEVISE 270
            M+TG+GGIKPWT+GF+DY    +L IDHK V +PINY G F+T+ TP+TS H GGA F MCDGSV+FL+  M L +LK +ATR  GEV+ E
Sbjct:  219 MITGFGGIKPWTWGFYDYSDGDFLLIDHKVVQYPINYQGTFLTNMTPFTSYHQGGAQFAMCDGSVTFLSNNMSLDILKALATRHAGEVVGE 309
[Close]
BLAST of mRNA_M-pyrifera_M_contig109523.1994.1 vs. uniprot
Match: A0A368KQ11_9BACT (DUF1559 domain-containing protein n=1 Tax=Blastopirellula cremea TaxID=1031537 RepID=A0A368KQ11_9BACT)

HSP 1 Score: 120 bits (301), Expect = 2.920e-31
Identity = 56/89 (62.92%), Postives = 69/89 (77.53%), Query Frame = 1 
Query:    1 MVTGWGGIKPWTFGFFDYG-TSWLTIDHKTVNFPINYTGDFITSTTPYTSEHPGGAMFLMCDGSVSFLTETMPLSLLKGMATRSNGEVI 264
            M+TG+GGIKPW +G++ Y  T WL IDHK V FPINY G F T++TP+ S HPGGAMF M DGSV+FL+ETM L +LK  AT++N EVI
Sbjct:  220 MITGFGGIKPWVWGYYRYNATDWLMIDHKMVQFPINYRGVFTTNSTPFGSYHPGGAMFAMSDGSVTFLSETMRLDILKAFATKNNQEVI 308
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig109523.1994.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7V8V1M6_9BACT1.350e-5998.90Uncharacterized protein n=1 Tax=Bremerella alba Ta... [more]
UPI001CCFAF4F1.070e-5085.71DUF1559 domain-containing protein n=1 Tax=Bremerel... [more]
UPI001CCD43192.340e-3362.22DUF1559 domain-containing protein n=1 Tax=Bremerel... [more]
A0A7V8V3H4_9BACT7.940e-3366.29Uncharacterized protein n=2 Tax=Bremerella alba Ta... [more]
UPI001E4621A41.820e-3264.04DUF1559 domain-containing protein n=1 Tax=unclassi... [more]
A0A5C5V9N7_9BACT5.080e-3267.44Putative major pilin subunit n=2 Tax=Blastopirellu... [more]
A0A2S8FNQ1_9BACT7.450e-3263.74Prepilin-type cleavage/methylation domain-containi... [more]
A4A1R3_9BACT7.750e-3265.56Uncharacterized protein n=2 Tax=Blastopirellula ma... [more]
A0A356A6L3_9PLAN1.030e-3160.44Prepilin-type cleavage/methylation domain-containi... [more]
A0A368KQ11_9BACT2.920e-3162.92DUF1559 domain-containing protein n=1 Tax=Blastopi... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig109523contigM-pyrifera_M_contig109523:15..290 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score122.9
Seed ortholog evalue8e-26
Seed eggNOG ortholog314230.DSM3645_29341
Hectar predicted targeting categoryother localisation
EggNOG free text desc.general secretion pathway protein
EggNOG OGsCOG2165@1,COG2165@2
COG Functional cat.NU
Best tax levelBacteria
Best eggNOG OGNA|NA|NA
Exons1
Model size276
Cds size276
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815605.5575886-CDS-M-pyrifera_M_contig109523:14..2901622815605.5575886-CDS-M-pyrifera_M_contig109523:14..290Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig109523 15..290 +
1692277484.134637-CDS-M-pyrifera_M_contig109523:14..2901692277484.134637-CDS-M-pyrifera_M_contig109523:14..290Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig109523 15..290 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig109523.1994.1prot_M-pyrifera_M_contig109523.1994.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig109523 15..290 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig109523.1994.1

>prot_M-pyrifera_M_contig109523.1994.1 ID=prot_M-pyrifera_M_contig109523.1994.1|Name=mRNA_M-pyrifera_M_contig109523.1994.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=92bp
MVTGWGGIKPWTFGFFDYGTSWLTIDHKTVNFPINYTGDFITSTTPYTSE
HPGGAMFLMCDGSVSFLTETMPLSLLKGMATRSNGEVISED*
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mRNA from alignment at M-pyrifera_M_contig109523:15..290+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig109523.1994.1 ID=mRNA_M-pyrifera_M_contig109523.1994.1|Name=mRNA_M-pyrifera_M_contig109523.1994.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=276bp|location=Sequence derived from alignment at M-pyrifera_M_contig109523:15..290+ (Macrocystis pyrifera P11B4 male)
ATGGTGACCGGCTGGGGTGGCATTAAGCCCTGGACGTTTGGCTTCTTCGA
CTACGGAACATCGTGGCTGACGATCGACCATAAAACGGTCAACTTCCCGA
TCAACTACACTGGTGACTTCATTACCTCGACGACGCCTTACACGAGCGAA
CACCCAGGCGGGGCCATGTTCCTAATGTGCGACGGAAGCGTTAGTTTTCT
GACCGAGACGATGCCGCTGAGCTTGCTCAAGGGAATGGCCACTCGCAGCA
ACGGCGAAGTGATCTCGGAAGACTAA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig109523:15..290+

>mRNA_M-pyrifera_M_contig109523.1994.1 ID=mRNA_M-pyrifera_M_contig109523.1994.1|Name=mRNA_M-pyrifera_M_contig109523.1994.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=552bp|location=Sequence derived from alignment at M-pyrifera_M_contig109523:15..290+ (Macrocystis pyrifera P11B4 male)
ATGGTGACCGGCTGGGGTGGCATTAAGCCCTGGACGTTTGGCTTCTTCGA
CTACGGAACATCGTGGCTGACGATCGACCATAAAACGGTCAACTTCCCGA
TCAACTACACTGGTGACTTCATTACCTCGACGACGCCTTACACGAGCGAA
CACCCAGGCGGGGCCATGTTCCTAATGTGCGACGGAAGCGTTAGTTTTCT
GACCGAGACGATGCCGCTGAGCTTGCTCAAGGGAATGGCCACTCGCAGCA
ACGGCGAAGTGATCTCGGAAGACTAAATGGTGACCGGCTGGGGTGGCATT
AAGCCCTGGACGTTTGGCTTCTTCGACTACGGAACATCGTGGCTGACGAT
CGACCATAAAACGGTCAACTTCCCGATCAACTACACTGGTGACTTCATTA
CCTCGACGACGCCTTACACGAGCGAACACCCAGGCGGGGCCATGTTCCTA
ATGTGCGACGGAAGCGTTAGTTTTCTGACCGAGACGATGCCGCTGAGCTT
GCTCAAGGGAATGGCCACTCGCAGCAACGGCGAAGTGATCTCGGAAGACT
AA
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