mRNA_M-pyrifera_M_contig8551.19936.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig8551.19936.1
Unique NamemRNA_M-pyrifera_M_contig8551.19936.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig8551.19936.1 vs. uniprot
Match: D7G262_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G262_ECTSI)

HSP 1 Score: 305 bits (781), Expect = 3.540e-99
Identity = 156/225 (69.33%), Postives = 182/225 (80.89%), Query Frame = 1
Query:    1 VRAECDDLLN-LPLPLSGDTTLELSSAAIDCTILDDNELQEFIIEGGTLTLSGPSTTKFTNMRFTVMDGAGLIFDFAMTEFGPNLGFERQDDFGGFMVQVMPGGSVEFTGELAATGLENMRSVFWNGVGGSIEFASNVVFNDCDSNVFRDNFGRLRFRSDVTFTDNRYLSISNDGGTVRIDGDALFVTNGGGFDGHSGGAFSNTNGGTAIFRGSAVFSDNSCDES 672
            VRA CDDL   L  PL+GDTTLELS  A DC IL+DNEL+EF +EGGTLTL+GPSTTKFTN++FT+MD AGLIFD+  TEFGPNLG+E++D FGG+MVQV+ GGSVEF GE+AATGL NMRSVF+N  GG+IEFA N VF+D  +NVFR N GRLRF  D TFT+N YL+I N+GG+VRI      V NG  FDGHSGG FSNT+GGTAIFRG A+FS N+CDES
Sbjct:   18 VRASCDDLRTALSSPLTGDTTLELSGDA-DCPILEDNELEEFTVEGGTLTLTGPSTTKFTNLKFTIMDQAGLIFDYDTTEFGPNLGYEQEDSFGGYMVQVLSGGSVEFLGEMAATGLANMRSVFYNEAGGNIEFADNAVFDDIGTNVFRSNLGRLRFYGDATFTNNIYLAIDNEGGSVRIXXXXXXVENGRSFDGHSGGGFSNTDGGTAIFRGPALFSSNACDES 241          
BLAST of mRNA_M-pyrifera_M_contig8551.19936.1 vs. uniprot
Match: A0A6H5JB77_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JB77_9PHAE)

HSP 1 Score: 140 bits (352), Expect = 7.310e-36
Identity = 78/128 (60.94%), Postives = 89/128 (69.53%), Query Frame = 1
Query:  286 MVQVMPGGSVEFTGELAATGLENMRSVFWNGVGGSIEFASNVVFNDCDSNVFRDNFGRLRFRSDVTFTDNRYLSISNDGGTVRIDGDALFVTNGGGFDGHSGGAFSNTNGGTAIFRGSAVFSDNSCDE 669
            MVQV+ GGSVEF GE+AATGL NMRSVF+N  GGSIE                     LRF  D TFT+N YL+I NDGG+VRI+G+A FV NG  FDGHSGG FSNT+GG AIFRG A+FS N+CDE
Sbjct:    1 MVQVLTGGSVEFLGEMAATGLANMRSVFYNEAGGSIE---------------------LRFYGDATFTNNIYLAIDNDGGSVRINGEATFVENGRSFDGHSGGGFSNTDGGIAIFRGPALFSSNTCDE 107          
BLAST of mRNA_M-pyrifera_M_contig8551.19936.1 vs. uniprot
Match: A0A6H5J6U2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J6U2_9PHAE)

HSP 1 Score: 125 bits (315), Expect = 1.780e-32
Identity = 63/88 (71.59%), Postives = 74/88 (84.09%), Query Frame = 1
Query:    4 RAECDDLLN-LPLPLSGDTTLELSSAAIDCTILDDNELQEFIIEGGTLTLSGPSTTKFTNMRFTVMDGAGLIFDFAMTEFGPNLGFER 264
            RA CDDL + L  PL+GDTTLELS  A DC IL+DNEL+EF +EGGTLTL+GPSTTKFTN++FT+MD AGLIFD+  TEFGPNLG+ R
Sbjct:    5 RASCDDLRSALSSPLTGDTTLELSGDA-DCPILEDNELEEFTVEGGTLTLTGPSTTKFTNLKFTIMDQAGLIFDYDTTEFGPNLGYVR 91          
BLAST of mRNA_M-pyrifera_M_contig8551.19936.1 vs. uniprot
Match: D7FHY2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHY2_ECTSI)

HSP 1 Score: 121 bits (303), Expect = 8.430e-28
Identity = 94/226 (41.59%), Postives = 120/226 (53.10%), Query Frame = 1
Query:   10 ECDDLLNLPLPLSGDTTLELSSAA-IDCTILDD-NELQEFIIEGG-TLTL-SGPSTTKFTNMRFTVMDGAGLIFDFAMTEFGPNLGFERQDDFGGFMVQVMPGGSVEFTGELAATGLENMRSVFWNGVGGSIEFASNVVFNDCDSNVFRDNFGRLRFRSDVTFTDNRYLSISNDG--GTVRIDGDALFVTNGGGFDGHSGGAFSNTNGGTAIFRGSAVFSDNSCDE 669
            ECDD+      +S  T ++L +   +DC   DD  EL    IE G TLT+ S  S  +F N+RF V +GA LIFD  +T  GPN G  + +  G F+  V  GGS+ F G+  A+ + N+RSVF+N   GSIEF  + +FN+ + NVFR N                     NDG    VR    A F+ N G FDG  G A  N  GGTAIFR  AVFSD+ CDE
Sbjct:   25 ECDDIDAYFGDVSSVTEIDLGTIIRVDCPSNDDAEELPYITIESGKTLTVKSEESFVRFVNLRFIVEEGASLIFDMPVTRVGPNSG--QSEGAGDFVFDVAEGGSLTFNGKFRASQVSNVRSVFYNR--GSIEFKDDSLFNN-NGNVFRSNXXXXXXXXXXXXXXXXXXXXXNDGEDSFVRFSKTATFIDNAGFFDGAWGCAIDN--GGTAIFRDDAVFSDHDCDE 243          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig8551.19936.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D7G262_ECTSI3.540e-9969.33Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JB77_9PHAE7.310e-3660.94Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5J6U2_9PHAE1.780e-3271.59Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FHY2_ECTSI8.430e-2841.59Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig8551contigM-pyrifera_M_contig8551:2026..10499 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-08_004880.1
Exons10
Model size963
Cds size963
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig8551.19936.1prot_M-pyrifera_M_contig8551.19936.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig8551 2026..10499 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816764.6043684-CDS-M-pyrifera_M_contig8551:2025..21101622816764.6043684-CDS-M-pyrifera_M_contig8551:2025..2110Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig8551 2026..2110 -
1692278164.7545254-CDS-M-pyrifera_M_contig8551:2025..21101692278164.7545254-CDS-M-pyrifera_M_contig8551:2025..2110Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig8551 2026..2110 -
1622816764.6168423-CDS-M-pyrifera_M_contig8551:2945..30291622816764.6168423-CDS-M-pyrifera_M_contig8551:2945..3029Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig8551 2946..3029 -
1692278164.7660472-CDS-M-pyrifera_M_contig8551:2945..30291692278164.7660472-CDS-M-pyrifera_M_contig8551:2945..3029Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig8551 2946..3029 -
1622816764.631367-CDS-M-pyrifera_M_contig8551:3401..34851622816764.631367-CDS-M-pyrifera_M_contig8551:3401..3485Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig8551 3402..3485 -
1692278164.7770572-CDS-M-pyrifera_M_contig8551:3401..34851692278164.7770572-CDS-M-pyrifera_M_contig8551:3401..3485Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig8551 3402..3485 -
1622816764.6450238-CDS-M-pyrifera_M_contig8551:4017..41011622816764.6450238-CDS-M-pyrifera_M_contig8551:4017..4101Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig8551 4018..4101 -
1692278164.7880244-CDS-M-pyrifera_M_contig8551:4017..41011692278164.7880244-CDS-M-pyrifera_M_contig8551:4017..4101Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig8551 4018..4101 -
1622816764.6602533-CDS-M-pyrifera_M_contig8551:4329..44221622816764.6602533-CDS-M-pyrifera_M_contig8551:4329..4422Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig8551 4330..4422 -
1692278164.8024359-CDS-M-pyrifera_M_contig8551:4329..44221692278164.8024359-CDS-M-pyrifera_M_contig8551:4329..4422Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig8551 4330..4422 -
1622816764.6738086-CDS-M-pyrifera_M_contig8551:6301..63701622816764.6738086-CDS-M-pyrifera_M_contig8551:6301..6370Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig8551 6302..6370 -
1692278164.8116555-CDS-M-pyrifera_M_contig8551:6301..63701692278164.8116555-CDS-M-pyrifera_M_contig8551:6301..6370Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig8551 6302..6370 -
1622816764.6853306-CDS-M-pyrifera_M_contig8551:6916..69851622816764.6853306-CDS-M-pyrifera_M_contig8551:6916..6985Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig8551 6917..6985 -
1692278164.8221214-CDS-M-pyrifera_M_contig8551:6916..69851692278164.8221214-CDS-M-pyrifera_M_contig8551:6916..6985Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig8551 6917..6985 -
1622816764.6963902-CDS-M-pyrifera_M_contig8551:7533..76701622816764.6963902-CDS-M-pyrifera_M_contig8551:7533..7670Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig8551 7534..7670 -
1692278164.833098-CDS-M-pyrifera_M_contig8551:7533..76701692278164.833098-CDS-M-pyrifera_M_contig8551:7533..7670Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig8551 7534..7670 -
1622816764.7102187-CDS-M-pyrifera_M_contig8551:8404..84921622816764.7102187-CDS-M-pyrifera_M_contig8551:8404..8492Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig8551 8405..8492 -
1692278164.8444874-CDS-M-pyrifera_M_contig8551:8404..84921692278164.8444874-CDS-M-pyrifera_M_contig8551:8404..8492Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig8551 8405..8492 -
1622816764.7222338-CDS-M-pyrifera_M_contig8551:10329..104991622816764.7222338-CDS-M-pyrifera_M_contig8551:10329..10499Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig8551 10330..10499 -
1692278164.8558228-CDS-M-pyrifera_M_contig8551:10329..104991692278164.8558228-CDS-M-pyrifera_M_contig8551:10329..10499Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig8551 10330..10499 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig8551.19936.1

>prot_M-pyrifera_M_contig8551.19936.1 ID=prot_M-pyrifera_M_contig8551.19936.1|Name=mRNA_M-pyrifera_M_contig8551.19936.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=321bp
VRAECDDLLNLPLPLSGDTTLELSSAAIDCTILDDNELQEFIIEGGTLTL
SGPSTTKFTNMRFTVMDGAGLIFDFAMTEFGPNLGFERQDDFGGFMVQVM
PGGSVEFTGELAATGLENMRSVFWNGVGGSIEFASNVVFNDCDSNVFRDN
FGRLRFRSDVTFTDNRYLSISNDGGTVRIDGDALFVTNGGGFDGHSGGAF
SNTNGGTAIFRGSAVFSDNSCDESGGGAYNGPGSKMTFYKKAGFFDNRCR
NGDGGGIDNEGGDLKFRGVVEVNGNRAAETGGGISTGNGGTTTFYRKTTI
TSNTAGTNGGGMSLYKLRQR*
back to top

mRNA from alignment at M-pyrifera_M_contig8551:2026..10499-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig8551.19936.1 ID=mRNA_M-pyrifera_M_contig8551.19936.1|Name=mRNA_M-pyrifera_M_contig8551.19936.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=8474bp|location=Sequence derived from alignment at M-pyrifera_M_contig8551:2026..10499- (Macrocystis pyrifera P11B4 male)
GTCAGGGCGGAATGTGACGACCTGCTAAACCTCCCCCTCCCCCTGTCGGG AGACACGACCCTCGAGCTATCAAGCGCCGCCATCGACTGCACCATTCTCG ACGACAACGAGCTGCAGGAGTTTATCATCGAGGGCGGCACTCTAACGCTC AGCGGCCCCAGCACGACCAAGTGAGATTTCTCTCCGCTCTTCTGAAACGC TGTGAGGCGTATGTATGTACAGCGCTCCTTTTTCGACCATAGAGACTGCA ACAACAGCGATCTCACCAACGGCGCTCTCGCTCGACTTTTGTGCCCCCTA CCCCGCCTAGTCTGCTTCCACGCGCATTGGCACTGGCCTGAACACGTTGC CCATAGATACGTAGACGCAGCACTGTAAGCCGTCCAACCCGGTAGAAGTA CCATGCAACTACAGCCGTAATGACGACCTCGCGGGGTATTTATCCCGGTG GTTCATAACAATTATACCACGTGCACTCGCAAACGAAAACATTTATTGAT ATCAACATTGAGGGTTGAGGAAACCGGGCTTTTTCCTCAACTAAAACGGG GACCATAGTAAATAGGACTAAATACTGTTAGTAAAAATACCTTAACATAT AGGTTTTTGTTTGTACCGCGGGTCCTATTTACTATGTTCCCCCGTAATAG AGGCGTAAGCTCCTTTGGTATGGCGCCCTATTCATTCACCGCTATGTTCT TGGAAAACGCTCCAAGCTGACGCTGTGTAGGGAAACGTAAATAATGTGAA CTTCCAATACACTACTTCTTCCAGGCCTGCTGATGCCATTGCCGAGGTGG CGTGGGCGAAACCCTAAAAATATGTTTCTACCCAGCTATTGTCATGGTGG CCCATAAGCCATACCAGGTATGTATGTATTGCTTTTAATGTACGACGAGA TTTTTTTATTAGTATCGGATACCAGGTATATACTTTCAGCGCAATATTTT CCCTATTTTTATGAAGAAACGTACGCATGTCGTATCTGGACTATGCAGCC GCCACGACGACATACCCAGGGGCACTATACAGCCCCGTGCCTATTTCCGA CGGAAAACTATAGAATTCAGTTTTCGAACGATCCTATGTGTAGCCGAAAT TGTTACCGTACGTTGAAGGTGAGGCAGAGATGGGTAAAAAAATGTCTTTG TGAAAGAATAACTATGCTTGAGCGGGGGTCGTTTTTTTTGTCAGCCGACA TGCTGCCAGGAAATGTACACGATGTACACATTTGGCATCGCTGGAAAGAG TACGATTTACAGTAGGTCGTAACGCTCCCCTTTCGGTTTAGCGAGAATCC CGGCCGTTCTTGAGAAACACGAGCCCCAAGAAAGGCACTCGCATCTCTAT TGATTGATCTCTGTCTCATACGCAAATATTAATAACTCCATGTCATGACT TCGGCTACGAGGGGGATCGCTGGAGAGTGAAGTCCGCTTGATTGACGTGG AACCCAACCACGGATTTTCAGAGTCCAGCTGCGTGTCTGTTGCAGATGCT AAATAGTGCAAGTAAGTGTGGGAACATCTTTCCTTCCATAAAACGGGAGA AAATGGTGCCCGCAAAAACGATGATAGATTCTGGGAAGATGCGAAGAAAA AGTGGATCCATCCGTTAAAACTATTCATTAAGGGCTGTCGTAGTAGCAGT AGCGGTACAACCGTGCATGATCCAAAGCTGGTGCCGACGTGTGGGAGCAT ACGCAAGTGGTTGTTTGTACGTATTACGTATACGTACTTGAAGGCAGATG GTGCTGCTTTACACCCGGTCGGTGAGTTTCACCTCCTGCCGGAACAAAAA TACTCCATTCCGTCGGTCTTCGAGAAGGGTGACCGACAGGTAGGTGTCTC TTCCTTCCGCACGCACGAGTGTGTGTACGTGGTGTATAGCCGCAACTTCA CGCACATACACCCCTTCCTTGCCTCTCCCCTGTATATTTGCATCTCACGA CTATATGCGTCCTACCTGTTCCCGCTTCTGCAAACGCCTCCCTCCGCTCG GTCGAAGGTTCACAAACATGAGGTTCACCGTGATGGACGGCGCGGGCCTG ATCTTCGACTTTGCTATGACGGAGTTCGGCCCCAACCTCGGTTTCGTGAG TTGAAACAAAATGTATAGCATTCGATCGGCAGGAAACGATTTACGGGTGC TTCAAACGCTGTACTTATTTTGTGTGTACCAATTGTTCTTTTTCGACCCA GAAACTATGCTGTACCTGGTACCTACGTACGGCATCGGATCTCTGGTTGG TTTGAACGAGGATTCTACTCTGGGAGTGGTGCTTATTTGTATGTACCAAT TGTCTTTTTTCAACTCAGAAACGTTACTGTACCTGGTACACGGCATCGAA TTTCTGGCCGGTTTAAACGTGGATTCTGCTTTCTGAGTAGTGACACGCTT TGTTCCTAACTTGATGGTTGCTTCCGACAGCTCAATCTAGGCTGTGGTGC AGCACACACCATTTCTGTGAACGTCTGGTGACCCACCCCGCAAACTCCCC CAGGCCTCGCACTACACAGAGTAGAAAAGCGCCTTCTCTGACGAACACGT AATTTCGGTCCCCATACACCTTTGAACATGTCTCTGCGTACGGCAGTAGT ACTATAGTTGCCCAATAAATTGGTACTACGGTAACAAGCAACGAAAATCT AGGTCGATCCGCGATCGATACTGCACTCTTGGGGGGCGCGCGGATTTACC TACGTGTGTACGTATGATGTCATGTTAGCGACGTTTTTAAGAGTGGCATC ATCAGAATGACGTCAACACTGCCCGCCAATACCCGTCACCCCTTTAATTG TTTTGGCTCGACTGTCTCGTCGATTGCAGGAACGACAAGACGATTTTGGC GGATTCATGGTGCAAGTGATGCCGGGAGGTTCCGTTGAGTTCACCGGCGA GTTGGCCGCAACCGGGCTGGAGAACATGCGGAGCGTTTTCTGGAACGGCG TCGGAGGCAGCATCGAGTGAGTGACACCGGACGAGCTCCGCTGACCATTC GGCCGATCCGGTTAATTAAAGAGGGACGTTCGCGTCCGCCTCGAGGTCGG GGCTAGCCGAAACGAGAGCTGATCACGGGCGTCAAGTTTTTACTTGGCGC TGTGCGCCGTAGGACAGTGCGGACACGAACACCTGTGTTCGTTTTTTTAA GCGCTTTGTATATCTCTTCCCGTGGGCGTCTTGGGCGTGCTTCGCTTATG AGAACATGTATGCATTCCAGGTGGGAAGGTCCACGCCATCGTGCTACTCG TTTGTACTGTAGGTAGCGTAAAACTAATAAGCTCCTAGTTCAACAACAAC ACACTATCCTGCAAGCGGGTAGCGTTCGTCGACTATAACAAGTACCTCAC CACACAGCTGCAGTAGAGGACGCAGTAACCCGGACACGCAATGATACCTC AGGCCATCCACGAATTTTGAAGCTGGTTTTACATTATCTCTTCTCGTAAA CAGCCAAAAAATGCCCCTTTTCGTCTAAATAGTTTCCCTGCTCCCCTCCC CCCCCTGTGAACAGATTCGCTTCCAACGTGGTGTTCAACGACTGCGACTC GAACGTATTCAGAGATAACTTTGGCCGCCTGAGGTATGAGTACGAGGAGT CCGTTTATTTGCGGACGTCCATCCCGAAAACGTGCCGCTTAATGGCATTC CATTCTTATTCGATTTTGGACCCCATCCACCCGACCGCTGTCGTGGGAGA TAAATGTATGGGGATTCGAGGGATTTCTTACGAAGGAGCAGCGCGGGAAG GTTGTTTTTGTGCTGGTTTGTTGCGTTTCCGAGTGTCTCGAGGTGTTTCT CAAGCCCCCAGGTTTGATCAAGACCATTTTCGGCGCAAGTCGTGGTACTG GCCCAACTTTAACCGCATGGTTGCATCGATGGCGCAATGCCGGGCGGCCG CTGTGCTCCAGAACAAATGCCGCGTAGTGGGACCCTCCAGCATGAAGCGC GCGGTGTGGGTCGCGTGCATGTCCACCCTGTGTGTAACTAACTGATATCA TACACATGGTCGGCAGAATTAATTATCGGTGTAGGGTCGCCGTGTCTTAG CGCCGTGACTGGGCTGTTTTGTTTGCTCTGCTTACCTGCTGGTGTGTGCA TTCCGTGCGTTCTCTCAATTTTCTGCCAGGTTCCGCAGCGATGTGACTTT CACCGACAACCGTTACCTCTCCATCAGCAACGATGGCGGTACTGTCAGGT GAGCAATGAATGTGCCAAGCACACCTACAGCAGTAGCAGCTCATGGCTCA ACGAAACTTGAGGCGACGCCATTCCCTCGCTCCATCGCGTTGTCTGTTCA TTATAGTCCCAGGTCCAGGCTTGATGTTTCTTCCCGCGAAAGATGCATAC TGCTGCGGAAGGGGTGATCCTATACTGCAGCAGTATTGTGAGGCCCCTTA TCTTGCAGAATAAGCTCTACGCTGCGGTACACCTAACGCACACAGTGCGT TTTCGAAAAGTGTGGTGCTCAGCCAGCTGTATGGGCGAGGGTTTTGTGTA CAGGTATATTCTGCAGTTTACTGGCACGGTTTGTTTGGAGTGAAACACCG ATGGGGTTCCAATCAGACGAGGAGCCCCCGTCAACCTGGTAAAAAATCTG TACTACCATGGCTACCGCTACCTCACTATATTGGCATGGATACCGCACAG TTTGATATGCGGTTACCGCACTCCAGGCGACATGGCTACCGAACCGTAGA GGCATTCTCGACGAACTGTAGTGGTATGAATGCCGTCCTTGTAGTGGCAT GGCTACCGTGCCGTGTAGCGGCATGGGTACCAACCGCACTGTTGCGGTAC GTCTACTGCGCTGTAGCGGTGGCATGGACACCGCACTGTAGTGACGTGGC CACCGCGCCGTAGTGGCATGGACACCGCACTGAAGTGGCATCACTATCAC GCTGTGGTGGATTGATTACCGCGCCGTAGTCGCATGGCTACCGCACTGTA CTGGCATGACTACCGCACTGTAGAGGCAGGGAAACCGCTACTGCGCTGTA GCAGTGGCATGGACACCGCACTGTAGTGACGTGACCACCGCGCTGTAGCG GTGGCATGGACACCGCACTGAAGTGGCATCATTATCACGCTGTAGTGGGT TGATTACCGCACTGTACTAGCGTGGCTACCGCACTGTAGAGGCATGGCCA CCGCACTCTAGTGGCGTCGCTGCGGCGCTCTTGTGTCATGGGTACCGCTC TGTGGTGTCATGGCTTCACCAAAATAAGAATACCTTTGTAGAATACCCGC AGACAAGTCAAAAAAAAAAAGTCGGGATGGGGGGGGGGGGGGGGGAAAAA AAAGAGATTTTATTAAGGTCCCCACCCCCCACCAAATCAAAGGTGGAATA TGTACGCCTGTATTACCCACCTGTACNNNNNNNNNNCCAGAAGAAAAAAA GCCAAAAAAAAAAAAAAAAAAAGGGGGGGGGGGGGGGGGGGGGGGGGGGG GGGTAAGAAGAAGTGATTTGCTGAGTACCACCACCCACACATAATACAGA GATGAAATACGCACCCGTGAATCCCCCGCTCGCAGATGCGTTCGCAATAG TATGCAGAAATTCGAACAAGGTATTATACACAACGTTGTTTATCTCACTG GAGGGATGCTCTCCAAGCATTCCTAGCGACGGGTCATTCCAACTACAGTA GGAACACGTACAAAAACAGTTTGAAGGAACTCGTCGTTGGTCGAATGCCT CTCACAGGAAAACCGCAAACCTGACTAAACAACACAATGTCATGGTCTTC CTGGCCCGGATAATATTCGACGATCGACGGCAAAACCAGTCCCGTGACTA CGTATCAATAGACTAGATAGTCTACGAACGAGAACCTCCAGAGACCGTGG AGAGGGAGGTCTGGACGTCGATGCGCGCACAATATCTGGTATATACCTAT TTCGTGTGTCCACAGTTAATAGGACCATTGTTGTATATAAAAATCTATAT ATTTACCTATTTTTACTGACAATATTTGGTCCTATTTACTACGGACCCCC GTAATAGGAGCTTGGAGATACCATCGTCGATAGTAACTTAATATCCCGGA TGTTCGCTTTCCGCTATATCTTCCCAGGATCGACGGCGATGCTTTGTTCG TCACCAACGGGGGTGGGTTCGACGGGCACAGCGGTGGGGCTTTCTCCAAC ACGAACGGGGGCACTGCCATGTACGATGGGTATTTCGATTTGTGATGTAG TTTGCGTCTTGGCTGACGGGGTGAGGCAAATTGCCGCGCTTACCTTCATG GGTCGAGGATATACATACGTGGTCAACGCTACTACAGTACTTGCTGACAC CTCGCGATGAAGGCTGGGTTTAGGAGGACACACGTTGCGGTACATTTTCC CAACCCATCGTTCTACTCCCTCCCCGCCCGTTGCCTCTCATTGCACAGCT TCCGAGGTTCCGCGGTGTTCAGCGACAACAGCTGCGACGAGTCGGGTGGT GGGGCGTACAACGGACCGGGCTCGAAAATGACGTGAGATACAACACGTAT AGGAAGGCCTTGGGAAAGCGCGGGACCCGTCAGGGGGGGGTTGTGTTGAC GGGTGCGCACGCTTGAAATTGTGTGTTGTCAGCGCGGTAACGTTCAATGG ACATTGGATGACCTGGTGTGCCCCGGCTTCGAAGCCAAATCATGGAGTTA AAGGGAGTACTATTTCATCAAGAGGAAATGGCGTTCTTCGAGCGCTTTCA TCCCGTGTACTTGGTGGGTTCAACTGGCGCTACTATTCGCCGCAATAGGC ATTACCCATACCCTTTAGGACTCGCGTCATAGCCTATTCAGCGCCACATT TGTTTCGTCGGTAGTGTCAATTTTATTGGTGTGCGTTTTCGTTGGATTCG AGCAGGGCGAGTGATCAACCCAGAGGGGGAGAGGGGGGTGACCGCAAACT CTAGTTGACTTTATTTCGCTTCAGAGAGGATGATTGATGCCGGCCAAACG GTTTCCCCCCCCTGACCACCAAAATGTGATATATGTCTCCACGTCATTGC TCCACGCTCTACAGTTTCTACAAGAAGGCTGGCTTCTTCGACAACCGGTG CCGGAACGGAGACGGCGGCGGCATCGACAACGAAGGCGGAGACCTCAAGT GAGGCTCGTCGATTGGTCTTGACTGTATGCGTACCATCGCCGTCGATACG TAGAAAAGGCGGCGCACCGCTTTTTGGCATCAGTGTGGTTTGTTCCGGTG TCAATTGTGTCGTAGTTTTCAATCGTATGTTATAGTCGCCTCGGAATTAA AACGCGGACAACAGGCCTGACCCAGGATTTCTATAGCGTGGCAACGATTC ATGGAGTCGAACAACTGCTGCTGTAGGACAATCCCACGCCGTGTTCATGC ACAGTCCCTCGCCGGTGGTATCGTCAAGCTACTGTAGTACGCCAGCAAGC CCCCAATACGCACGTACGTGTTTGTGCGACGTTTGTCTGTTTTTTTTTTG CGTGTTTTGGGCCATCGCAGGTTCCGTGGAGTCGTGGAAGTTAACGGAAA CCGAGCGGCAGAGACTGGCGGTGGGATCTCAACCGGCAACGGGGGAACAA CAACGTGAGACACTATCGCAGGCAAAATACTACACACGCCCGGACACAAT CAGGGACGGGGGGTACTCCAATGTTCACTCTCGCCGACCTTGGGTCAGTC GTACGAGTGGCGCTGCGCTTGGCTCAAAGATGAAGCTAAGAACCTTGCGT TGGCGCCCAGCGTGACTACACAAATTCCATTGCAGCGCTATCATCGCGAA ACAGAAATTCGCAAGCCCCTAAAAACCCCGCAAATAAATAGGGTAGCCGC GTCGCGCGAATGGCGCTGAGGTGATGGAACGCGAGTCCCGAAACGTAGCC CCCCTACAGTGGTACCGTACCCTTGGTCATAGACGCATCCCACGGCAGAA GTTGTACATTTGGGTTAAATATGTTTCGGCCCCGGTTAGTGTGAGACTTT TACACCGGAATTTTTGCTTCAGGCTTAGCGCATAGAAGTATTGGTCGGCT TCCACCAACTATCTTCTTCGCGGTAAGTCACGTTTGGGGGGAGAAATACC GACCTCCTAACGTGAGGTCCTCAGAAAACAACGCACGACCCCTACCGTTG CATCGCTCGACACCTAATGTTGTGAAGCATGTACGTGAAAGTTGTTTGCC CACAAATTTACGTACGCGCAGCACACCGTTCCGCCGTCCCCGCTCGACTT CCATGTTATTCCTCTTTCCCCGAACCTGCTGCTGCTCCTCCTCCTCCTCT TCCTCCACCTCCTGCTCCTCCTCCTCCTCCTCCTCCTCCTTCCCCTCCTC CTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTTCTCCT CCTGCCCCTCCTCCTCTTCGTACGCGTCTCCTTGTGTAGGTTCTACCGCA AGACTACCATCACCTCCAACACGGCCGGCACGAATGGCGGAGGAATGAGC CTTTACAAGCTCCGCCAGAGGTAA
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig8551:2026..10499-

>mRNA_M-pyrifera_M_contig8551.19936.1 ID=mRNA_M-pyrifera_M_contig8551.19936.1|Name=mRNA_M-pyrifera_M_contig8551.19936.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1926bp|location=Sequence derived from alignment at M-pyrifera_M_contig8551:2026..10499- (Macrocystis pyrifera P11B4 male)
GTCAGGGCGGAATGTGACGACCTGCTAAACCTCCCCCTCCCCCTGTCGGG
AGACACGACCCTCGAGCTATCAAGCGCCGCCATCGACTGCACCATTCTCG
ACGACAACGAGCTGCAGGAGTTTATCATCGAGGGCGGCACTCTAACGCTC
AGCGGCCCCAGCACGACCAAGTCAGGGCGGAATGTGACGACCTGCTAAAC
CTCCCCCTCCCCCTGTCGGGAGACACGACCCTCGAGCTATCAAGCGCCGC
CATCGACTGCACCATTCTCGACGACAACGAGCTGCAGGAGTTTATCATCG
AGGGCGGCACTCTAACGCTCAGCGGCCCCAGCACGACCAAGTTCACAAAC
ATGAGGTTCACCGTGATGGACGGCGCGGGCCTGATCTTCGACTTTGCTAT
GACGGAGTTCGGCCCCAACCTCGGTTTCGTTCACAAACATGAGGTTCACC
GTGATGGACGGCGCGGGCCTGATCTTCGACTTTGCTATGACGGAGTTCGG
CCCCAACCTCGGTTTCGAACGACAAGACGATTTTGGCGGATTCATGGTGC
AAGTGATGCCGGGAGGTTCCGTTGAGTTCACCGGCGAGTTGGCCGCAACC
GGGCTGGAGAACATGCGGAGCGTTTTCTGGAACGGCGTCGGAGGCAGCAT
CGAGAACGACAAGACGATTTTGGCGGATTCATGGTGCAAGTGATGCCGGG
AGGTTCCGTTGAGTTCACCGGCGAGTTGGCCGCAACCGGGCTGGAGAACA
TGCGGAGCGTTTTCTGGAACGGCGTCGGAGGCAGCATCGAATTCGCTTCC
AACGTGGTGTTCAACGACTGCGACTCGAACGTATTCAGAGATAACTTTGG
CCGCCTGAGATTCGCTTCCAACGTGGTGTTCAACGACTGCGACTCGAACG
TATTCAGAGATAACTTTGGCCGCCTGAGGTTCCGCAGCGATGTGACTTTC
ACCGACAACCGTTACCTCTCCATCAGCAACGATGGCGGTACTGTCAGGTT
CCGCAGCGATGTGACTTTCACCGACAACCGTTACCTCTCCATCAGCAACG
ATGGCGGTACTGTCAGGATCGACGGCGATGCTTTGTTCGTCACCAACGGG
GGTGGGTTCGACGGGCACAGCGGTGGGGCTTTCTCCAACACGAACGGGGG
CACTGCCATGATCGACGGCGATGCTTTGTTCGTCACCAACGGGGGTGGGT
TCGACGGGCACAGCGGTGGGGCTTTCTCCAACACGAACGGGGGCACTGCC
ATCTTCCGAGGTTCCGCGGTGTTCAGCGACAACAGCTGCGACGAGTCGGG
TGGTGGGGCGTACAACGGACCGGGCTCGAAAATGACCTTCCGAGGTTCCG
CGGTGTTCAGCGACAACAGCTGCGACGAGTCGGGTGGTGGGGCGTACAAC
GGACCGGGCTCGAAAATGACTTTCTACAAGAAGGCTGGCTTCTTCGACAA
CCGGTGCCGGAACGGAGACGGCGGCGGCATCGACAACGAAGGCGGAGACC
TCAATTTCTACAAGAAGGCTGGCTTCTTCGACAACCGGTGCCGGAACGGA
GACGGCGGCGGCATCGACAACGAAGGCGGAGACCTCAAGTTCCGTGGAGT
CGTGGAAGTTAACGGAAACCGAGCGGCAGAGACTGGCGGTGGGATCTCAA
CCGGCAACGGGGGAACAACAACGTTCCGTGGAGTCGTGGAAGTTAACGGA
AACCGAGCGGCAGAGACTGGCGGTGGGATCTCAACCGGCAACGGGGGAAC
AACAACGTTCTACCGCAAGACTACCATCACCTCCAACACGGCCGGCACGA
ATGGCGGAGGAATGAGCCTTTACAAGCTCCGCCAGAGGTAAGTTCTACCG
CAAGACTACCATCACCTCCAACACGGCCGGCACGAATGGCGGAGGAATGA
GCCTTTACAAGCTCCGCCAGAGGTAA
back to top