mRNA_M-pyrifera_M_contig85508.19935.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig85508.19935.1
Unique NamemRNA_M-pyrifera_M_contig85508.19935.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig85508.19935.1 vs. uniprot
Match: A0A5A8EC81_CAFRO (Sialidase domain-containing protein n=3 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8EC81_CAFRO)

HSP 1 Score: 170 bits (431), Expect = 2.030e-47
Identity = 101/195 (51.79%), Postives = 124/195 (63.59%), Query Frame = 1
Query:    1 GAYVEDWVWGSDDDGETFFVANSSLLH-MDEAQLVELSD----------GRVMANMRNDHYT-SCDCRAVSISEDGGSSWSAPSYDPTLISPVCQATIVSDATQEN----LFFANPASKSERALGTVRMSTDDGESWSKGFLINSGAYAYSCLV----NIDEDFVGLLWETESNPSDCTGPSCMQYFSKIPKSLL 525
            GAYV D+VW SDDD  T+ V+++S    MDEAQLV++            G VMANMR+DH   SCDCRA +IS DGG+S+S   +D  LISPVCQATI+S A+       L+FANPASKS+RA GTVR S +   SW +  LI S A+AYSCL     +  E  +GLLWET+     C GPSC   FS IP +LL
Sbjct:  301 GAYVHDFVWYSDDDAATWKVSDTSTFAGMDEAQLVQVPAHAAAALGAPAGAVMANMRSDHLNKSCDCRAFAISTDGGASFSDVRWDSALISPVCQATIISGASPSGNGSALYFANPASKSQRAQGTVRASFNGAASWPEARLIASSAFAYSCLAPPSAHSPEPSLGLLWETDGGSFQCLGPSCRVVFSSIPTALL 495          
BLAST of mRNA_M-pyrifera_M_contig85508.19935.1 vs. uniprot
Match: A0A7S2D8Z2_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Haptolina brevifila TaxID=156173 RepID=A0A7S2D8Z2_9EUKA)

HSP 1 Score: 154 bits (390), Expect = 2.520e-44
Identity = 86/172 (50.00%), Postives = 112/172 (65.12%), Query Frame = 1
Query:    1 GAYVEDWVWGSDDDGETFFVANS-SLLHMDEAQLVELSDGRVMANMRNDHYT-SCDCRAVSISEDGGSSWSAPSYDPTLISPVCQATIVSDA----TQENLFFANPASKSERALGTVRMSTDDGESWSKGFLINSGAYAYSCLVNI-DEDFVGLLWETES--NPSDCTGPSC 489
            G Y +D+VW SDD G T+ +A + S+L MDEAQLVEL DGRVMAN+RN H   SC+CR V+IS DGG ++   +YDPTL+SP+C ATI+  A     ++ LFFANPAS   R  G +R S D G++W+   L+    YAYSCL +  D + +GLLWET        C G +C
Sbjct:   35 GPYTKDFVWFSDDGGATYEMAQTDSMLLMDEAQLVELPDGRVMANLRNHHVNKSCNCRGVAISSDGGQTFGQVTYDPTLVSPICMATILRGAPNSSARDALFFANPASTRARTNGHIRRSDDAGQTWADKALLVGDPYAYSCLAHTPDAETLGLLWETWEPIGGKHCNGEAC 206          
BLAST of mRNA_M-pyrifera_M_contig85508.19935.1 vs. uniprot
Match: A9V8C6_MONBE (Predicted protein n=1 Tax=Monosiga brevicollis TaxID=81824 RepID=A9V8C6_MONBE)

HSP 1 Score: 159 bits (403), Expect = 7.450e-44
Identity = 85/171 (49.71%), Postives = 117/171 (68.42%), Query Frame = 1
Query:    1 GAYVEDWVWGSDDDGETFFVANSSLLHMDEAQLVELSDGRVMANMRNDHYTSCDCRAVSISEDGGSSWSAPSYDPTLISPVCQATIVSDATQENLFFANPASKSERALGTVRMSTDDGESWSKGFLINSGAYAYSCLVNIDE-DFVGLLWETESNPSDCTGPSCMQYFSKI 510
            GAY  D VW SDD G T+ V+ ++   MDEAQLVEL DGRVMANMRN+H  +C CRA ++SEDGG+S+ A  +   L+SPVC A+I+      N++FANP   S R+ G +R S D G +W++  L+  G+YAYSCL ++ + + +GLLWET +   DCTG SC+  FS++
Sbjct:  262 GAYQYDSVWYSDDGGLTYNVSKTNFTFMDEAQLVELPDGRVMANMRNNHINACKCRAYALSEDGGASFGAIQFADALVSPVCMASILR-GLDGNVYFANPGQTSGRSGGMLRRSAD-GFAWNQSALVWPGSYAYSCLTHVPKSNCIGLLWETSA--PDCTGDSCVCVFSRL 428          
BLAST of mRNA_M-pyrifera_M_contig85508.19935.1 vs. uniprot
Match: F2U6W4_SALR5 (Sialidase domain-containing protein n=1 Tax=Salpingoeca rosetta (strain ATCC 50818 / BSB-021) TaxID=946362 RepID=F2U6W4_SALR5)

HSP 1 Score: 158 bits (399), Expect = 4.700e-43
Identity = 87/176 (49.43%), Postives = 114/176 (64.77%), Query Frame = 1
Query:    1 GAYVEDWVWGSDDDGETFFVANSSLLHMDEAQLVELSDGRVMANMRNDHYTSCDCRAVSISEDGGSSWSAPSYDPTLISPVCQATIVSDATQENLFFANPASKSERALGTVRMSTDDGESWSKGFLINSGAYAYSCLV---NIDEDFVGLLWETESNPSDCTGPSCMQYFSKIPKS 519
            GAY  D VW SDD G  + +A ++  HMDEAQLVEL DGRV+ANMRN+H   C CR V+IS+DGG+++   S+ P LISPVCQATI++      ++F NPAS SER  G +R S+D G  W K   + +GA+AYSCL    N +   +GLL+ET +    C GPSC   F+ +  S
Sbjct:  292 GAYQFDSVWFSDDGGHMYSLAQTNFTHMDEAQLVELPDGRVLANMRNNHINKCSCRGVAISDDGGTTFGPVSFAPQLISPVCQATILT-GNDNKVYFVNPASTSERVNGVLRQSSD-GIHWDKQRTVYAGAFAYSCLSLLPNNNATHLGLLFET-AMLHGCEGPSCRTVFAAVATS 464          
BLAST of mRNA_M-pyrifera_M_contig85508.19935.1 vs. uniprot
Match: A0A196SHM2_BLAHN (Sialidase n=1 Tax=Blastocystis sp. subtype 1 (strain ATCC 50177 / NandII) TaxID=478820 RepID=A0A196SHM2_BLAHN)

HSP 1 Score: 146 bits (368), Expect = 2.190e-39
Identity = 79/175 (45.14%), Postives = 112/175 (64.00%), Query Frame = 1
Query:    1 GAYVEDWVWGSDDDGETFFVANSSLLHMDEAQLVELSDGRVMANMRNDHYTSCDCRAVSISEDGGSSWSAPSYDPTLISPVCQATIVSDATQENLFFANPASKSERALGTVRMSTDDGESWSKGFLINSGAYAYSCLVNIDED-FVGLLWETESNPSDCTGPSCMQYFSKIPKSL 522
            GAY  D VW +DD G+T+  +N+ +  MDEAQLVEL DG VMANMRN H    + RAVSIS DGG ++    YDP LI P+C A+I+ D     ++F+N A  ++R   +V+ S++ G++W +  L+  G  AYS ++++D D F+G+ WET  N + C G SC   FS IPK+ 
Sbjct:  188 GAYEYDPVWYTDDVGKTWAASNTLMKKMDEAQLVELGDGIVMANMRNQHLQG-NTRAVSISMDGGENFGPIYYDPALIDPICAASIIRDYRTNVIYFSNAAHPTKRINMSVKRSSNWGKTWDRTLLVYEGPSAYSDMIDLDSDEFIGMTWET--NSTGCAGESCRTLFSFIPKNF 359          
BLAST of mRNA_M-pyrifera_M_contig85508.19935.1 vs. uniprot
Match: UPI000711C0B9 (hypothetical protein n=1 Tax=Blastocystis sp. subtype 4 TaxID=944170 RepID=UPI000711C0B9)

HSP 1 Score: 137 bits (344), Expect = 8.820e-36
Identity = 73/176 (41.48%), Postives = 107/176 (60.80%), Query Frame = 1
Query:    1 GAYVEDWVWGSDDDGETFFVANSSLLHMDEAQLVELSDGRVMANMRNDHYTSCDCRAVSISEDGGSSWSAPSYDPTLISPVCQATIVSDATQENLFFANPASKSERALGTVRMSTDDGESWSKGFLINSGAYAYSCLVNI-DEDFVGLLWETESNPSDCTGPSCMQYFSKIPKSLL 525
            GAY  D VW +DD G+++  +N+    MDEAQLVEL DG VMANMRN H      R +++S DGG ++    YDP L+ P+  A+I+ D + + ++F+N A  + R   TV+ S D  ++W    L+  G  AYS ++++ DE+++GL WET  N + C G SC   FS +PK  L
Sbjct:  191 GAYEYDPVWYTDDLGKSWTASNTYFKKMDEAQLVELGDGIVMANMRNQHLNGT-ARGIAVSTDGGDNFGEIYYDPVLVDPINAASIIRDYSTDVVYFSNAAHPTTRVRMTVKRSVDFTKTWGSELLVFEGPSAYSDMIDLEDEEYIGLTWET--NSTGCKGESCRTLFSFVPKKFL 363          
BLAST of mRNA_M-pyrifera_M_contig85508.19935.1 vs. uniprot
Match: A0A649UZH4_9STRA (Sialidase n=1 Tax=Opalinidae sp. TaxID=2059444 RepID=A0A649UZH4_9STRA)

HSP 1 Score: 128 bits (322), Expect = 1.370e-32
Identity = 77/176 (43.75%), Postives = 109/176 (61.93%), Query Frame = 1
Query:    1 GAYVEDWVWGSDDDGETFFVANSSLLHMDEAQLVELSDGRVMANMRNDHYTSCDCRAVSISEDGGSSWSAPSYDPTLISPVCQATIVSDATQENLFFANPASKSERALGTVRMSTDDGESWSKGFLINSG-AYAYSCLVNIDED-FVGLLWETESNPSDCTGPSCMQYFSKIPKSL 522
            GAY +D +W SDD GET  ++   L  +DEAQLVEL +G V+ANMR       + RA SIS DGG++++ P  +P LI PVCQA+I+ D      FF+NP   ++R   T++ S ++ E+WSK + ++ G A AYS L ++     +GLLWE+E     CTG  C+ YFS +  SL
Sbjct:  188 GAYDKDILWYSDDHGETIKMSQPPLPGVDEAQLVELHNGTVLANMRTPRKFG-NYRAGSISVDGGNTYTLPYPEPKLIEPVCQASIIRDTQTNAFFFSNPHHITQRVNMTIQRSDNNCETWSKKYTLHPGKAGAYSGLTSVSTPGAIGLLWESEYEK--CTGTCCVIYFSLVKSSL 360          
BLAST of mRNA_M-pyrifera_M_contig85508.19935.1 vs. uniprot
Match: A0A7W0RP61_9PLAN (Exo-alpha-sialidase n=1 Tax=Planctomycetaceae bacterium TaxID=2026779 RepID=A0A7W0RP61_9PLAN)

HSP 1 Score: 116 bits (291), Expect = 7.520e-28
Identity = 71/173 (41.04%), Postives = 102/173 (58.96%), Query Frame = 1
Query:   31 SDDDGETFFVANSSLLHMDEAQLVELSD--GRVMANMRNDHYTSCDCRAVSISEDGGSSWSAPSYDPTLISPVCQATIVSDATQEN-----LFFANPASKSERALGTVRMSTDDGESWSKGFLINSGAYAYSCLVNIDEDFVGLLWET-ESNPSDCTGPSCMQYFSKIPKSLL 525
            SDD GET+ +  + +  M+E Q+VEL+D  G ++ +MR+  Y    CRA S S DGG SWS P   PTL+ PVCQA+++  +   +     L F+NPA   +R   T+R S DDG +WS G+ +++GA AYSCL  +  D VG L+E  E N  +         F+++P SLL
Sbjct:  222 SDDRGETWQIGGAIVPKMNECQVVELADPAGSLLMDMRS--YRGKSCRAQSTSTDGGLSWSTPVDVPTLVEPVCQASLIRQSWPMSGEKGVLLFSNPADPKQRVSMTIRASDDDGRTWSAGYELHAGASAYSCLAPLTGDTVGCLYERGEKNAYE------QITFARVPLSLL 386          
BLAST of mRNA_M-pyrifera_M_contig85508.19935.1 vs. uniprot
Match: A0A7C3SXB6_9BACT (Exo-alpha-sialidase n=1 Tax=Candidatus Hydrogenedentes bacterium TaxID=2030809 RepID=A0A7C3SXB6_9BACT)

HSP 1 Score: 114 bits (284), Expect = 5.630e-27
Identity = 66/148 (44.59%), Postives = 95/148 (64.19%), Query Frame = 1
Query:   31 SDDDGETFFVANSSLLHMDEAQLVELSDGRVMANMRNDHYTSCDCRAVSISEDGGSSWSAPSYDPTLISPVCQATIVSDATQ--ENLFFANPASKSERALGTVRMSTDDGESWSKGFLINSGAYAYSCLVNIDEDFVGLLWET-ESNP 465
            SDD G+T+  +    +  +E Q+VE++D +++ NMRN +     CRA SISEDGG SWS  SYD  LI PVCQA+++   ++  E L F+NPA K ER   TV++S+D G++W    L+  G  AYS L +++E  VG+L+E  E NP
Sbjct:  208 SDDGGKTWAYSQPIGIKTNECQVVEITDNKLLINMRN-YNREYPCRATSISEDGGLSWSNLSYDLELIEPVCQASLIKHQSENREYLIFSNPADKKERIKMTVKISSDYGKTWKYQKLLYKGPSAYSSLYSMNEKEVGILFECGEKNP 354          
BLAST of mRNA_M-pyrifera_M_contig85508.19935.1 vs. uniprot
Match: A0A3D3UXZ0_9BACT (Exo-alpha-sialidase n=1 Tax=Phycisphaerales bacterium TaxID=2052180 RepID=A0A3D3UXZ0_9BACT)

HSP 1 Score: 113 bits (283), Expect = 1.750e-26
Identity = 65/156 (41.67%), Postives = 95/156 (60.90%), Query Frame = 1
Query:   31 SDDDGETFFVANSSLLHMDEAQLVELSDGRVMANMRNDHYTSCDCRAVSISEDGGSSWSAPSYDPTLISPVCQATIVS---DATQENLFFANPASKSERALGTVRMSTDDGE-------SWSKGFLINSGAYAYSCLVNIDEDFVGLLWET-ESNP 465
            SDD G T+ ++ +     +E+Q+VELSDG +M NMR+  Y    CRAVSIS+DGG SWS  ++DPTLI PVCQA++++   D+ +  + F+NPA K  R   T+R+S DDG        +W    +++ G  AYSCL  ++   +   +E  E NP
Sbjct:  266 SDDHGSTWQISETITPGCNESQVVELSDGSLMMNMRS--YNRKQCRAVSISKDGGQSWSEITHDPTLIEPVCQASMITYNQDSNKSLVLFSNPADKKRRIRMTIRLSYDDGSPRDSLRRTWPVRKILHDGPAAYSCLTVLENGEIACFYEAGEKNP 419          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig85508.19935.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A5A8EC81_CAFRO2.030e-4751.79Sialidase domain-containing protein n=3 Tax=Cafete... [more]
A0A7S2D8Z2_9EUKA2.520e-4450.00Hypothetical protein (Fragment) n=1 Tax=Haptolina ... [more]
A9V8C6_MONBE7.450e-4449.71Predicted protein n=1 Tax=Monosiga brevicollis Tax... [more]
F2U6W4_SALR54.700e-4349.43Sialidase domain-containing protein n=1 Tax=Salpin... [more]
A0A196SHM2_BLAHN2.190e-3945.14Sialidase n=1 Tax=Blastocystis sp. subtype 1 (stra... [more]
UPI000711C0B98.820e-3641.48hypothetical protein n=1 Tax=Blastocystis sp. subt... [more]
A0A649UZH4_9STRA1.370e-3243.75Sialidase n=1 Tax=Opalinidae sp. TaxID=2059444 Rep... [more]
A0A7W0RP61_9PLAN7.520e-2841.04Exo-alpha-sialidase n=1 Tax=Planctomycetaceae bact... [more]
A0A7C3SXB6_9BACT5.630e-2744.59Exo-alpha-sialidase n=1 Tax=Candidatus Hydrogenede... [more]
A0A3D3UXZ0_9BACT1.750e-2641.67Exo-alpha-sialidase n=1 Tax=Phycisphaerales bacter... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig85508contigM-pyrifera_M_contig85508:41..568 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeOpisthokonta
Seed ortholog score162.9
Seed ortholog evalue1.3e-37
Seed eggNOG ortholog81824.XP_001748984.1
Preferred nameNEU1
KEGG rclassRC00028,RC00077
KEGG koko:K01186
KEGG ReactionR04018
KEGG Pathwayko00511,ko00600,ko04142,map00511,map00600,map04142
Hectar predicted targeting categoryother localisation
GOsGO:0000323,GO:0001573,GO:0001775,GO:0002252,GO:0002263,GO:0002274,GO:0002275,GO:0002283,GO:0002366,GO:0002376,GO:0002443,GO:0002444,GO:0002446,GO:0003674,GO:0003824,GO:0004308,GO:0004553,GO:0005575,GO:0005576,GO:0005622,GO:0005623,GO:0005737,GO:0005764,GO:0005773,GO:0005775,GO:0005975,GO:0006629,GO:0006643,GO:0006664,GO:0006665,GO:0006672,GO:0006687,GO:0006689,GO:0006807,GO:0006810,GO:0006887,GO:0006955,GO:0007275,GO:0007399,GO:0008150,GO:0008152,GO:0009056,GO:0009311,GO:0009313,GO:0009986,GO:0009987,GO:0010720,GO:0010975,GO:0010976,GO:0012505,GO:0016020,GO:0016042,GO:0016052,GO:0016192,GO:0016787,GO:0016798,GO:0016997,GO:0019377,GO:0022008,GO:0030054,GO:0030141,GO:0030149,GO:0030154,GO:0031344,GO:0031346,GO:0031410,GO:0031974,GO:0031982,GO:0031983,GO:0032501,GO:0032502,GO:0032940,GO:0034641,GO:0034774,GO:0035580,GO:0036230,GO:0042119,GO:0042127,GO:0042581,GO:0043202,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043299,GO:0043312,GO:0043603,GO:0044237,GO:0044238,GO:0044242,GO:0044248,GO:0044255,GO:0044422,GO:0044424,GO:0044433,GO:0044437,GO:0044444,GO:0044446,GO:0044464,GO:0045055,GO:0045321,GO:0045595,GO:0045597,GO:0045664,GO:0045666,GO:0046466,GO:0046479,GO:0046514,GO:0046903,GO:0048518,GO:0048522,GO:0048699,GO:0048731,GO:0048856,GO:0048869,GO:0050767,GO:0050769,GO:0050789,GO:0050793,GO:0050794,GO:0050896,GO:0051094,GO:0051128,GO:0051130,GO:0051179,GO:0051234,GO:0051239,GO:0051240,GO:0051960,GO:0051962,GO:0060205,GO:0060284,GO:0065007,GO:0070013,GO:0071704,GO:0097708,GO:0099503,GO:0120035,GO:1901135,GO:1901136,GO:1901564,GO:1901565,GO:1901575,GO:1903509,GO:2000026,GO:2000291
EggNOG free text desc.exo-alpha-(2->3)-sialidase activity
EggNOG OGs2QSIT@2759,39G5C@33154,COG4409@1
EC3.2.1.18
COG Functional cat.G
CAZyGH33
Best tax levelOpisthokonta
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko02042
Exons1
Model size528
Cds size528
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816764.5737836-CDS-M-pyrifera_M_contig85508:40..5681622816764.5737836-CDS-M-pyrifera_M_contig85508:40..568Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig85508 41..568 +
1692278164.736756-CDS-M-pyrifera_M_contig85508:40..5681692278164.736756-CDS-M-pyrifera_M_contig85508:40..568Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig85508 41..568 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig85508.19935.1prot_M-pyrifera_M_contig85508.19935.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig85508 41..568 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig85508.19935.1

>prot_M-pyrifera_M_contig85508.19935.1 ID=prot_M-pyrifera_M_contig85508.19935.1|Name=mRNA_M-pyrifera_M_contig85508.19935.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=176bp
GAYVEDWVWGSDDDGETFFVANSSLLHMDEAQLVELSDGRVMANMRNDHY
TSCDCRAVSISEDGGSSWSAPSYDPTLISPVCQATIVSDATQENLFFANP
ASKSERALGTVRMSTDDGESWSKGFLINSGAYAYSCLVNIDEDFVGLLWE
TESNPSDCTGPSCMQYFSKIPKSLL*
back to top

mRNA from alignment at M-pyrifera_M_contig85508:41..568+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig85508.19935.1 ID=mRNA_M-pyrifera_M_contig85508.19935.1|Name=mRNA_M-pyrifera_M_contig85508.19935.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=528bp|location=Sequence derived from alignment at M-pyrifera_M_contig85508:41..568+ (Macrocystis pyrifera P11B4 male)
GGTGCGTATGTGGAGGATTGGGTTTGGGGCAGTGATGACGATGGGGAGAC ATTTTTCGTGGCAAACTCTTCGCTGCTGCACATGGACGAGGCGCAGCTGG TGGAGTTGAGTGATGGGCGCGTGATGGCGAACATGCGGAACGACCACTAC ACGAGCTGCGACTGTCGGGCCGTTTCGATCTCAGAGGATGGGGGCAGCTC CTGGTCTGCGCCCTCCTACGACCCAACCCTCATCTCCCCAGTGTGCCAAG CCACCATCGTCTCTGATGCCACGCAAGAAAACCTCTTCTTCGCCAACCCA GCATCCAAGTCGGAACGAGCGCTGGGGACGGTGAGAATGTCCACAGACGA CGGAGAGAGCTGGTCCAAGGGCTTTCTGATCAACTCTGGCGCGTACGCAT ACTCTTGCCTCGTGAACATCGATGAAGACTTCGTGGGACTCCTGTGGGAA ACCGAATCCAACCCATCCGATTGCACAGGGCCATCCTGCATGCAGTACTT TTCCAAAATCCCAAAGTCGCTTTTGTGA
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig85508:41..568+

>mRNA_M-pyrifera_M_contig85508.19935.1 ID=mRNA_M-pyrifera_M_contig85508.19935.1|Name=mRNA_M-pyrifera_M_contig85508.19935.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1056bp|location=Sequence derived from alignment at M-pyrifera_M_contig85508:41..568+ (Macrocystis pyrifera P11B4 male)
GGTGCGTATGTGGAGGATTGGGTTTGGGGCAGTGATGACGATGGGGAGAC
ATTTTTCGTGGCAAACTCTTCGCTGCTGCACATGGACGAGGCGCAGCTGG
TGGAGTTGAGTGATGGGCGCGTGATGGCGAACATGCGGAACGACCACTAC
ACGAGCTGCGACTGTCGGGCCGTTTCGATCTCAGAGGATGGGGGCAGCTC
CTGGTCTGCGCCCTCCTACGACCCAACCCTCATCTCCCCAGTGTGCCAAG
CCACCATCGTCTCTGATGCCACGCAAGAAAACCTCTTCTTCGCCAACCCA
GCATCCAAGTCGGAACGAGCGCTGGGGACGGTGAGAATGTCCACAGACGA
CGGAGAGAGCTGGTCCAAGGGCTTTCTGATCAACTCTGGCGCGTACGCAT
ACTCTTGCCTCGTGAACATCGATGAAGACTTCGTGGGACTCCTGTGGGAA
ACCGAATCCAACCCATCCGATTGCACAGGGCCATCCTGCATGCAGTACTT
TTCCAAAATCCCAAAGTCGCTTTTGTGAGGTGCGTATGTGGAGGATTGGG
TTTGGGGCAGTGATGACGATGGGGAGACATTTTTCGTGGCAAACTCTTCG
CTGCTGCACATGGACGAGGCGCAGCTGGTGGAGTTGAGTGATGGGCGCGT
GATGGCGAACATGCGGAACGACCACTACACGAGCTGCGACTGTCGGGCCG
TTTCGATCTCAGAGGATGGGGGCAGCTCCTGGTCTGCGCCCTCCTACGAC
CCAACCCTCATCTCCCCAGTGTGCCAAGCCACCATCGTCTCTGATGCCAC
GCAAGAAAACCTCTTCTTCGCCAACCCAGCATCCAAGTCGGAACGAGCGC
TGGGGACGGTGAGAATGTCCACAGACGACGGAGAGAGCTGGTCCAAGGGC
TTTCTGATCAACTCTGGCGCGTACGCATACTCTTGCCTCGTGAACATCGA
TGAAGACTTCGTGGGACTCCTGTGGGAAACCGAATCCAACCCATCCGATT
GCACAGGGCCATCCTGCATGCAGTACTTTTCCAAAATCCCAAAGTCGCTT
TTGTGA
back to top