mRNA_M-pyrifera_M_contig85507.19934.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig85507.19934.1
Unique NamemRNA_M-pyrifera_M_contig85507.19934.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig85507.19934.1 vs. uniprot
Match: A0A1V9ZCL7_9STRA (Uncharacterized protein n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9ZCL7_9STRA)

HSP 1 Score: 54.3 bits (129), Expect = 2.830e-6
Identity = 35/104 (33.65%), Postives = 59/104 (56.73%), Query Frame = 1 
Query:   13 KVHHVDSLAVGSFGVLGLASWISANTVFTHLPELAQN-PEGFALASTLNVALQAANVAPAIHAFVSARYLSTFVVDAWTIKGLLSLGMVTMTLMALFWRETSLI 321
            KVH      +   G  GL SW+ ++ VF     L Q  PEG+++ + + V+LQ+AN+ P ++  +++R    ++     I GLL LGM+  +L+A+FW  T+ I
Sbjct:    5 KVHSTRKTYIAFVG-FGLGSWVVSDFVFAQFAALMQQTPEGYSIGAYVIVSLQSANIFPMLYMLLNSR--QHYISIPTMIWGLLVLGMIACSLLAVFWNSTTTI 105
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BLAST of mRNA_M-pyrifera_M_contig85507.19934.1 vs. uniprot
Match: UPI001C360310 (Uncharacterized protein n=1 Tax=Manduca sexta TaxID=7130 RepID=UPI001C360310)

HSP 1 Score: 50.4 bits (119), Expect = 6.530e-5
Identity = 31/88 (35.23%), Postives = 55/88 (62.50%), Query Frame = 1 
Query:   61 GLASWISANTVFTHLPELAQN-PEGFALASTLNVALQAANVAPAIHAFVSARYLSTFVVDAWTIKGLLSLGMVTMTLMALFWRETSLI 321
            G+ +W+  N ++  LP L +  PEG+AL S++ +A+Q ANV   ++ F+  + L    +D++ I GLL+LG + + L A  + +TS+I
Sbjct:   85 GMGTWLGVNGIYVQLPLLVERLPEGWALPSSMVLAVQLANVGLLVYGFL--QRLRPNSLDSYYIYGLLTLGTLALVLNAFLYDQTSVI 170
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BLAST of mRNA_M-pyrifera_M_contig85507.19934.1 vs. uniprot
Match: UPI0011822097 (Uncharacterized protein n=6 Tax=Manduca sexta TaxID=7130 RepID=UPI0011822097)

HSP 1 Score: 50.4 bits (119), Expect = 6.550e-5
Identity = 31/88 (35.23%), Postives = 55/88 (62.50%), Query Frame = 1 
Query:   61 GLASWISANTVFTHLPELAQN-PEGFALASTLNVALQAANVAPAIHAFVSARYLSTFVVDAWTIKGLLSLGMVTMTLMALFWRETSLI 321
            G+ +W+  N ++  LP L +  PEG+AL S++ +A+Q ANV   ++ F+  + L    +D++ I GLL+LG + + L A  + +TS+I
Sbjct:   85 GMGTWLGVNGIYVQLPLLVERLPEGWALPSSMVLAVQLANVGLLVYGFL--QRLRPNSLDSYYIYGLLTLGTLALVLNAFLYDQTSVI 170
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig85507.19934.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A1V9ZCL7_9STRA2.830e-633.65Uncharacterized protein n=1 Tax=Thraustotheca clav... [more]
UPI001C3603106.530e-535.23Uncharacterized protein n=1 Tax=Manduca sexta TaxI... [more]
UPI00118220976.550e-535.23Uncharacterized protein n=6 Tax=Manduca sexta TaxI... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig85507contigM-pyrifera_M_contig85507:463..861 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeArthropoda
Seed ortholog score64.7
Seed ortholog evalue3e-08
Seed eggNOG ortholog136037.KDR16658
KEGG koko:K14620
KEGG TC2.A.125.1.2,2.A.125.1.5
KEGG Pathwayko04977,map04977
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Protein of unknown function (DUF1011)
EggNOG OGs38F27@33154,3BF98@33208,3CX22@33213,3SKUF@50557,41WCT@6656,KOG4255@1,KOG4255@2759
COG Functional cat.S
Best tax levelInsecta
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko02000
Exons2
Model size321
Cds size321
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816764.5244288-CDS-M-pyrifera_M_contig85507:462..6731622816764.5244288-CDS-M-pyrifera_M_contig85507:462..673Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig85507 463..673 +
1692278164.7097728-CDS-M-pyrifera_M_contig85507:462..6731692278164.7097728-CDS-M-pyrifera_M_contig85507:462..673Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig85507 463..673 +
1622816764.5360875-CDS-M-pyrifera_M_contig85507:751..8611622816764.5360875-CDS-M-pyrifera_M_contig85507:751..861Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig85507 752..861 +
1692278164.7269833-CDS-M-pyrifera_M_contig85507:751..8611692278164.7269833-CDS-M-pyrifera_M_contig85507:751..861Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig85507 752..861 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig85507.19934.1prot_M-pyrifera_M_contig85507.19934.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig85507 463..861 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig85507.19934.1

>prot_M-pyrifera_M_contig85507.19934.1 ID=prot_M-pyrifera_M_contig85507.19934.1|Name=mRNA_M-pyrifera_M_contig85507.19934.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=107bp
RVSEKVHHVDSLAVGSFGVLGLASWISANTVFTHLPELAQNPEGFALAST
LNVALQAANVAPAIHAFVSARYLSTFVVDAWTIKGLLSLGMVTMTLMALF
WRETSLI
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mRNA from alignment at M-pyrifera_M_contig85507:463..861+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig85507.19934.1 ID=mRNA_M-pyrifera_M_contig85507.19934.1|Name=mRNA_M-pyrifera_M_contig85507.19934.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=399bp|location=Sequence derived from alignment at M-pyrifera_M_contig85507:463..861+ (Macrocystis pyrifera P11B4 male)
AGAGTCTCAGAGAAGGTTCACCATGTGGATTCCTTGGCAGTGGGAAGCTT
TGGGGTGCTGGGATTAGCGTCTTGGATTTCTGCCAATACCGTGTTCACGC
ACCTCCCAGAGCTGGCCCAGAACCCAGAAGGGTTTGCACTTGCGTCGACG
CTGAACGTTGCGCTACAAGCTGCCAACGTGGCTCCCGCAATCCATGCGTT
CGTTTCGGCTCGTTTCCACGCAGCTTCCGCCACGGGAAAGGACGGTGGAG
GAAAAACTGGTGCACCGTCCGCTTCTGGGGACAGAGCAGGGTACTTGTCT
ACGTTTGTGGTGGATGCTTGGACGATCAAAGGCCTGCTGAGCCTGGGAAT
GGTCACGATGACCTTGATGGCGCTGTTCTGGCGAGAAACGAGCTTGATT
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig85507:463..861+

>mRNA_M-pyrifera_M_contig85507.19934.1 ID=mRNA_M-pyrifera_M_contig85507.19934.1|Name=mRNA_M-pyrifera_M_contig85507.19934.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=642bp|location=Sequence derived from alignment at M-pyrifera_M_contig85507:463..861+ (Macrocystis pyrifera P11B4 male)
AGAGTCTCAGAGAAGGTTCACCATGTGGATTCCTTGGCAGTGGGAAGCTT
TGGGGTGCTGGGATTAGCGTCTTGGATTTCTGCCAATACCGTGTTCACGC
ACCTCCCAGAGCTGGCCCAGAACCCAGAAGGGTTTGCACTTGCGTCGACG
CTGAACGTTGCGCTACAAGCTGCCAACGTGGCTCCCGCAATCCATGCGTT
CGTTTCGGCTCAGAGTCTCAGAGAAGGTTCACCATGTGGATTCCTTGGCA
GTGGGAAGCTTTGGGGTGCTGGGATTAGCGTCTTGGATTTCTGCCAATAC
CGTGTTCACGCACCTCCCAGAGCTGGCCCAGAACCCAGAAGGGTTTGCAC
TTGCGTCGACGCTGAACGTTGCGCTACAAGCTGCCAACGTGGCTCCCGCA
ATCCATGCGTTCGTTTCGGCTCGGTACTTGTCTACGTTTGTGGTGGATGC
TTGGACGATCAAAGGCCTGCTGAGCCTGGGAATGGTCACGATGACCTTGA
TGGCGCTGTTCTGGCGAGAAACGAGCTTGATTGGTACTTGTCTACGTTTG
TGGTGGATGCTTGGACGATCAAAGGCCTGCTGAGCCTGGGAATGGTCACG
ATGACCTTGATGGCGCTGTTCTGGCGAGAAACGAGCTTGATT
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