mRNA_M-pyrifera_M_contig85431.19914.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig85431.19914.1
Unique NamemRNA_M-pyrifera_M_contig85431.19914.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig85431.19914.1 vs. uniprot
Match: A0A5A8CYA3_CAFRO (Uncharacterized protein n=2 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8CYA3_CAFRO)

HSP 1 Score: 121 bits (303), Expect = 1.080e-29
Identity = 59/115 (51.30%), Postives = 82/115 (71.30%), Query Frame = 1
Query:    7 DYEGWMTEKEQGLAQMLVENGQEHLFADWESGHE-DEKHAFFEVIDKVDSSYPSGVSAYVKRARDLLAASKRGDNPFEGMKPEVPDGVQLEFGSGAFEEMESVGLGEFAKSAFVL 348
            D   WM+++E+ LA +L+   QEHLFA W +G + D+KHAFFE I  ++  YP G++AYV +A +LL AS +G NPF+G KPEVP GV+L+ G   F++ E+ GL +F KSAFVL
Sbjct:   19 DAASWMSDEERDLANVLLSANQEHLFAKWAAGEDTDKKHAFFEQIAMLEKGYPGGIAAYVAKAIELLEASAKGVNPFDGFKPEVPTGVKLDVGDAEFDKFEAAGLDKFHKSAFVL 133          
BLAST of mRNA_M-pyrifera_M_contig85431.19914.1 vs. uniprot
Match: A0A5A8EQ85_CAFRO (Uncharacterized protein n=3 Tax=Sar TaxID=2698737 RepID=A0A5A8EQ85_CAFRO)

HSP 1 Score: 120 bits (301), Expect = 2.540e-29
Identity = 58/111 (52.25%), Postives = 81/111 (72.97%), Query Frame = 1
Query:   19 WMTEKEQGLAQMLVENGQEHLFADWESGHE-DEKHAFFEVIDKVDSSYPSGVSAYVKRARDLLAASKRGDNPFEGMKPEVPDGVQLEFGSGAFEEMESVGLGEFAKSAFVL 348
            WM+++E+ LA +L+   QEHLFA W +G + D+KHAFFE I  ++  YP G++AYV +A +LL AS +G NPF+G KPEVP GV+L+ G   F++ E+ GL +F KSAFVL
Sbjct:  183 WMSDEERDLANVLLSANQEHLFAKWAAGEDTDKKHAFFEQIAMLEKGYPGGIAAYVAKAIELLEASAKGVNPFDGFKPEVPTGVKLDVGDAEFDKFEAAGLDKFHKSAFVL 293          
BLAST of mRNA_M-pyrifera_M_contig85431.19914.1 vs. uniprot
Match: A0A812X494_9DINO (USP protein n=1 Tax=Symbiodinium sp. KB8 TaxID=230985 RepID=A0A812X494_9DINO)

HSP 1 Score: 111 bits (278), Expect = 2.920e-26
Identity = 60/115 (52.17%), Postives = 74/115 (64.35%), Query Frame = 1
Query:    7 DYEGWMTEKEQGLAQMLVENGQEHLFADWESGH-EDEKHAFFEVIDKVDSSYPSGVSAYVKRARDLLAASKRGDNPFEGMKPEVPDGVQLEFGSGAFEEMESVGLGEFAKSAFVL 348
            D E WM+++E+ L  +L+ +GQEHLFA WE G  ED+KHAFF+ +  +  SYP GV+AYV  A+ LLAASK G NPFEG  PEVP G  L+ GS  F   E  GL      AF L
Sbjct:   20 DAEAWMSDEEKELMGILMASGQEHLFAAWEPGQDEDKKHAFFDQVKMLQKSYPGGVAAYVSNAKALLAASKEGANPFEGFTPEVPAGETLDVGSPEFITFEEEGLKLVRDCAFCL 134          
BLAST of mRNA_M-pyrifera_M_contig85431.19914.1 vs. uniprot
Match: A0A803LHJ2_CHEQI (Uncharacterized protein n=1 Tax=Chenopodium quinoa TaxID=63459 RepID=A0A803LHJ2_CHEQI)

HSP 1 Score: 101 bits (252), Expect = 1.630e-24
Identity = 53/104 (50.96%), Postives = 69/104 (66.35%), Query Frame = 1
Query:   43 LAQMLVENGQEHLFADW-ESG-HEDEKHAFFEVIDKVDSSYPSGVSAYVKRARDLLAASKRGDNPFEGMKPEVPDGVQLEFGSGAFEEMESVGLGEFAKSAFVL 348
            LA++L+ENGQ HLF DW E G  +DEK AFF+ + ++D+SYP G+  Y+K AR+LLA SK G NPF+G  P VP G  L F    F + E  G+ E   +AFVL
Sbjct:   34 LAEVLIENGQSHLFDDWPEPGVDDDEKRAFFDQVARLDASYPGGLVQYIKNARELLADSKAGKNPFDGFTPSVPTGENLTFADENFIKYEEAGVKEAKNAAFVL 137          
BLAST of mRNA_M-pyrifera_M_contig85431.19914.1 vs. uniprot
Match: A0A7S3JVS8_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3JVS8_9STRA)

HSP 1 Score: 105 bits (262), Expect = 4.300e-24
Identity = 61/113 (53.98%), Postives = 76/113 (67.26%), Query Frame = 1
Query:   19 WMTE-KEQGLAQMLVENGQEHLFADW--ESGHEDEKHAFFEVIDKVDSSYPSGVSAYVKRARDLLAASKRGDNPFEGMKPEVPDGVQLEFGSGAFEEMESVGLGEFAKSAFVL 348
            W+TE +E+ L ++L E GQ HLF DW  E   ED K+ FF  I+K++SSYP G+ AYV+ A+ LLAAS RGDNP +G  P VP G  LEFGS A+ E E VG+ E  K  FVL
Sbjct:    3 WITEPEEKRLVEVLNECGQSHLFEDWTAEDSVEDRKN-FFAQIEKLNSSYPGGLKAYVESAKSLLAASARGDNPLDGWVPSVPTGESLEFGSEAWAEHEMVGVIEAKKCGFVL 114          
BLAST of mRNA_M-pyrifera_M_contig85431.19914.1 vs. uniprot
Match: A0A2N9G0J0_FAGSY (zf-RVT domain-containing protein n=1 Tax=Fagus sylvatica TaxID=28930 RepID=A0A2N9G0J0_FAGSY)

HSP 1 Score: 105 bits (262), Expect = 4.700e-24
Identity = 55/104 (52.88%), Postives = 73/104 (70.19%), Query Frame = 1
Query:   43 LAQMLVENGQEHLFADW-ESGHEDE-KHAFFEVIDKVDSSYPSGVSAYVKRARDLLAASKRGDNPFEGMKPEVPDGVQLEFGSGAFEEMESVGLGEFAKSAFVL 348
            LA+ML+E+GQ HLF  W E G EDE K AFF+ +D+++SSYP G+++Y+K AR+LLA SK G NPF+G  P VP+G  L +G   F   E  G+ E  K+AFVL
Sbjct:   43 LAKMLLESGQTHLFEHWPEPGVEDEEKKAFFDQVDRLNSSYPGGLTSYIKSARELLADSKAGKNPFDGFTPSVPEGDVLTYGDDNFTNFEDTGVREAEKAAFVL 146          
BLAST of mRNA_M-pyrifera_M_contig85431.19914.1 vs. uniprot
Match: W9QCQ5_9ROSA (UDP-sugar pyrophospharylase n=1 Tax=Morus notabilis TaxID=981085 RepID=W9QCQ5_9ROSA)

HSP 1 Score: 100 bits (250), Expect = 6.080e-24
Identity = 55/104 (52.88%), Postives = 70/104 (67.31%), Query Frame = 1
Query:   43 LAQMLVENGQEHLFADW-ESGHEDE-KHAFFEVIDKVDSSYPSGVSAYVKRARDLLAASKRGDNPFEGMKPEVPDGVQLEFGSGAFEEMESVGLGEFAKSAFVL 348
            LA+ L+E GQ HLF  W E G EDE K AFF+ + +++SSYP G+++Y+K AR+LLA SK G NPFEG  P VP G  L FG   F + E  G+ E  K+AFVL
Sbjct:    9 LAKTLLELGQSHLFEHWAEPGVEDEEKKAFFDQVARLNSSYPGGLASYIKTARELLADSKTGKNPFEGFTPSVPAGEVLTFGDDDFVKFEETGIKEVRKAAFVL 112          
BLAST of mRNA_M-pyrifera_M_contig85431.19914.1 vs. uniprot
Match: UPI0010A468CE (UDP-sugar pyrophosphorylase-like n=1 Tax=Prosopis alba TaxID=207710 RepID=UPI0010A468CE)

HSP 1 Score: 103 bits (258), Expect = 1.530e-23
Identity = 53/111 (47.75%), Postives = 73/111 (65.77%), Query Frame = 1
Query:   22 MTEKEQGLAQMLVENGQEHLFADWESG--HEDEKHAFFEVIDKVDSSYPSGVSAYVKRARDLLAASKRGDNPFEGMKPEVPDGVQLEFGSGAFEEMESVGLGEFAKSAFVL 348
            ++E++ GLA+ML+E GQ HLF  W +    +D+K  FFE + +++SSYP G+++Y+K AR LLA SK G NPF+G  P VP G  L F    F   E VG+ E  K+AFVL
Sbjct:   35 LSEEQVGLAKMLMEMGQSHLFEQWANPGVDDDQKKGFFEQVARLNSSYPGGLASYIKTARGLLADSKDGKNPFDGFTPSVPTGENLTFADDNFTNFEEVGIKEARKAAFVL 145          
BLAST of mRNA_M-pyrifera_M_contig85431.19914.1 vs. uniprot
Match: UPI0008FD3D37 (uncharacterized protein LOC104808371 n=1 Tax=Tarenaya hassleriana TaxID=28532 RepID=UPI0008FD3D37)

HSP 1 Score: 103 bits (257), Expect = 2.310e-23
Identity = 53/104 (50.96%), Postives = 70/104 (67.31%), Query Frame = 1
Query:   43 LAQMLVENGQEHLFADWESG--HEDEKHAFFEVIDKVDSSYPSGVSAYVKRARDLLAASKRGDNPFEGMKPEVPDGVQLEFGSGAFEEMESVGLGEFAKSAFVL 348
            LA++L+EN Q HLF  W      +DEK AFF+ I +++SSYP G++AY+K AR+LLA SK G NP++G  P VP G  L FG G F E+E  G+ E   +AFVL
Sbjct: 1206 LAKILLENRQSHLFQHWPHPGVDDDEKRAFFDQIARLNSSYPGGLAAYIKTARELLADSKAGKNPYDGFTPSVPSGENLTFGDGNFMELEETGVKEARTAAFVL 1309          
BLAST of mRNA_M-pyrifera_M_contig85431.19914.1 vs. uniprot
Match: A0A6P4B615_ARADU (UDP-sugar pyrophosphorylase 1 n=6 Tax=Arachis TaxID=3817 RepID=A0A6P4B615_ARADU)

HSP 1 Score: 103 bits (256), Expect = 2.740e-23
Identity = 52/111 (46.85%), Postives = 72/111 (64.86%), Query Frame = 1
Query:   22 MTEKEQGLAQMLVENGQEHLFADWESG--HEDEKHAFFEVIDKVDSSYPSGVSAYVKRARDLLAASKRGDNPFEGMKPEVPDGVQLEFGSGAFEEMESVGLGEFAKSAFVL 348
            ++ K+Q L +ML++NGQEH+F DW      +D+K AF + + ++DSSYP G+ AY+K A+ LLA SK G NPF+G  P VP G  L F    F + E  G+ E  K+AFVL
Sbjct:   12 LSPKQQELVKMLLDNGQEHVFRDWPGPGVDDDKKKAFIDQVTRLDSSYPGGLQAYIKNAKQLLADSKAGKNPFDGFTPSVPTGETLTFADENFIKYEEAGVQEAQKAAFVL 122          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig85431.19914.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A5A8CYA3_CAFRO1.080e-2951.30Uncharacterized protein n=2 Tax=Cafeteria roenberg... [more]
A0A5A8EQ85_CAFRO2.540e-2952.25Uncharacterized protein n=3 Tax=Sar TaxID=2698737 ... [more]
A0A812X494_9DINO2.920e-2652.17USP protein n=1 Tax=Symbiodinium sp. KB8 TaxID=230... [more]
A0A803LHJ2_CHEQI1.630e-2450.96Uncharacterized protein n=1 Tax=Chenopodium quinoa... [more]
A0A7S3JVS8_9STRA4.300e-2453.98Hypothetical protein n=1 Tax=Aureoumbra lagunensis... [more]
A0A2N9G0J0_FAGSY4.700e-2452.88zf-RVT domain-containing protein n=1 Tax=Fagus syl... [more]
W9QCQ5_9ROSA6.080e-2452.88UDP-sugar pyrophospharylase n=1 Tax=Morus notabili... [more]
UPI0010A468CE1.530e-2347.75UDP-sugar pyrophosphorylase-like n=1 Tax=Prosopis ... [more]
UPI0008FD3D372.310e-2350.96uncharacterized protein LOC104808371 n=1 Tax=Taren... [more]
A0A6P4B615_ARADU2.740e-2346.85UDP-sugar pyrophosphorylase 1 n=6 Tax=Arachis TaxI... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig85431contigM-pyrifera_M_contig85431:156..668 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score104.8
Seed ortholog evalue2.7e-20
Seed eggNOG ortholog28532.XP_010532348.1
Preferred nameUSP
KEGG rclassRC00002
KEGG koko:K12447
KEGG ReactionR00289,R00502,R01381,R03077,R08845
KEGG Pathwayko00040,ko00052,ko00053,ko00520,ko01100,ko01130,map00040,map00052,map00053,map00520,map01100,map01130
KEGG ModuleM00014
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003824,GO:0003983,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006011,GO:0006082,GO:0006139,GO:0006725,GO:0006793,GO:0006807,GO:0007275,GO:0008150,GO:0008152,GO:0009058,GO:0009225,GO:0009226,GO:0009555,GO:0009987,GO:0010035,GO:0010038,GO:0010491,GO:0016740,GO:0016772,GO:0016779,GO:0017103,GO:0018130,GO:0019438,GO:0019752,GO:0032501,GO:0032502,GO:0033356,GO:0034641,GO:0034654,GO:0042221,GO:0042995,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046398,GO:0046483,GO:0046686,GO:0047338,GO:0047350,GO:0048229,GO:0048856,GO:0050896,GO:0051748,GO:0052573,GO:0055086,GO:0070569,GO:0071704,GO:0090406,GO:0120025,GO:1901135,GO:1901137,GO:1901360,GO:1901362,GO:1901576
EggNOG free text desc.udp-sugar
EggNOG OGs37MVU@33090,3GGIU@35493,3HSQP@3699,COG2801@1,COG4284@1,KOG0017@2759,KOG2388@2759
EC2.7.7.64
COG Functional cat.M
Best tax levelBrassicales
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000
Exons3
Model size348
Cds size327
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig85431.19914.1prot_M-pyrifera_M_contig85431.19914.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig85431 156..647 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816763.487949-CDS-M-pyrifera_M_contig85431:155..2511622816763.487949-CDS-M-pyrifera_M_contig85431:155..251Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig85431 156..251 -
1692278164.1409647-CDS-M-pyrifera_M_contig85431:155..2511692278164.1409647-CDS-M-pyrifera_M_contig85431:155..251Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig85431 156..251 -
1622816763.5026789-CDS-M-pyrifera_M_contig85431:340..4571622816763.5026789-CDS-M-pyrifera_M_contig85431:340..457Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig85431 341..457 -
1692278164.1530645-CDS-M-pyrifera_M_contig85431:340..4571692278164.1530645-CDS-M-pyrifera_M_contig85431:340..457Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig85431 341..457 -
1622816763.5146706-CDS-M-pyrifera_M_contig85431:533..6471622816763.5146706-CDS-M-pyrifera_M_contig85431:533..647Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig85431 534..647 -
1692278164.162247-CDS-M-pyrifera_M_contig85431:533..6471692278164.162247-CDS-M-pyrifera_M_contig85431:533..647Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig85431 534..647 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816763.5270011-UTR-M-pyrifera_M_contig85431:647..6681622816763.5270011-UTR-M-pyrifera_M_contig85431:647..668Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig85431 648..668 -
1692278164.1744785-UTR-M-pyrifera_M_contig85431:647..6681692278164.1744785-UTR-M-pyrifera_M_contig85431:647..668Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig85431 648..668 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig85431.19914.1

>prot_M-pyrifera_M_contig85431.19914.1 ID=prot_M-pyrifera_M_contig85431.19914.1|Name=mRNA_M-pyrifera_M_contig85431.19914.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=109bp
MTEKEQGLAQMLVENGQEHLFADWESGHEDEKHAFFEVIDKVDSSYPSGV
SAYVKRARDLLAASKRGDNPFEGMKPEVPDGVQLEFGSGAFEEMESVGLG
EFAKSAFVL
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mRNA from alignment at M-pyrifera_M_contig85431:156..668-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig85431.19914.1 ID=mRNA_M-pyrifera_M_contig85431.19914.1|Name=mRNA_M-pyrifera_M_contig85431.19914.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=513bp|location=Sequence derived from alignment at M-pyrifera_M_contig85431:156..668- (Macrocystis pyrifera P11B4 male)
TTGGAGGACTACGAGGGCTGGATGACGGAGAAGGAGCAAGGGTTGGCGCA AATGTTGGTGGAAAACGGGCAAGAGCACCTGTTTGCGGACTGGGAAAGCG GCCATGAGGACGAAAAGCACGCGTTCTTTGAGGTGGTAGGTGAGGTGTTG GGGTGAAGCGGGTTGGAATTGGGAGAAGCGGCGACGCCACGTCATGTTTC GTGATTTGCAGATCGACAAAGTGGATAGTTCGTACCCTTCTGGGGTGAGC GCGTATGTGAAGCGTGCAAGAGACCTGTTGGCGGCGTCGAAGCGTGGGGA CAATCCTTTCGAAGGCATGAAACCTGAGGTATGGTGGAAGAAGATTCGTG GGTGTTGGGTTTTTTCGTGGTTTGCGGTAGATGTTGGTGGCTGTTTTTGT ATTTTTCCGGTGCGCAGGTGCCTGACGGAGTGCAGTTGGAGTTTGGGAGT GGCGCGTTTGAGGAGATGGAGTCTGTGGGGCTTGGGGAGTTTGCGAAGAG CGCGTTTGTGCTT
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig85431:156..668-

>mRNA_M-pyrifera_M_contig85431.19914.1 ID=mRNA_M-pyrifera_M_contig85431.19914.1|Name=mRNA_M-pyrifera_M_contig85431.19914.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=654bp|location=Sequence derived from alignment at M-pyrifera_M_contig85431:156..668- (Macrocystis pyrifera P11B4 male)
ATGACGGAGAAGGAGCAAGGGTTGGCGCAAATGTTGGTGGAAAACGGGCA
AGAGCACCTGTTTGCGGACTGGGAAAGCGGCCATGAGGACGAAAAGCACG
CGTTCTTTGAGGTGATGACGGAGAAGGAGCAAGGGTTGGCGCAAATGTTG
GTGGAAAACGGGCAAGAGCACCTGTTTGCGGACTGGGAAAGCGGCCATGA
GGACGAAAAGCACGCGTTCTTTGAGGTGATCGACAAAGTGGATAGTTCGT
ACCCTTCTGGGGTGAGCGCGTATGTGAAGCGTGCAAGAGACCTGTTGGCG
GCGTCGAAGCGTGGGGACAATCCTTTCGAAGGCATGAAACCTGAGATCGA
CAAAGTGGATAGTTCGTACCCTTCTGGGGTGAGCGCGTATGTGAAGCGTG
CAAGAGACCTGTTGGCGGCGTCGAAGCGTGGGGACAATCCTTTCGAAGGC
ATGAAACCTGAGGTGCCTGACGGAGTGCAGTTGGAGTTTGGGAGTGGCGC
GTTTGAGGAGATGGAGTCTGTGGGGCTTGGGGAGTTTGCGAAGAGCGCGT
TTGTGCTTGTGCCTGACGGAGTGCAGTTGGAGTTTGGGAGTGGCGCGTTT
GAGGAGATGGAGTCTGTGGGGCTTGGGGAGTTTGCGAAGAGCGCGTTTGT
GCTT
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