mRNA_M-pyrifera_M_contig109503.1991.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig109503.1991.1
Unique NamemRNA_M-pyrifera_M_contig109503.1991.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig109503.1991.1 vs. uniprot
Match: L8H1Q7_ACACA (GRIP domain containing protein n=1 Tax=Acanthamoeba castellanii str. Neff TaxID=1257118 RepID=L8H1Q7_ACACA)

HSP 1 Score: 88.6 bits (218), Expect = 3.210e-18
Identity = 46/102 (45.10%), Postives = 71/102 (69.61%), Query Frame = 1
Query:   22 EKRKAGLVHFSHLQAVRDDDLAQARRSIAELQLQLAESENMSKLHLLQTQALKEDIRELERAQKREGANLEYLKNVVVKYMEGGDHDVRLPPLRLLCLSFSP 327
            E+     V ++ ++A   ++L + +  + +L+  LA++E  +KLHL+Q Q LKE+IRE ERAQKREG+N+ YLKN++VKYME G+HD  LP +  + L F+P
Sbjct: 1299 ERGLTNNVLYNQMKAAHREELHRLKLELEDLRSALADAERTTKLHLMQEQVLKEEIREFERAQKREGSNIGYLKNIIVKYMETGEHDALLPVISTV-LQFTP 1399          
BLAST of mRNA_M-pyrifera_M_contig109503.1991.1 vs. uniprot
Match: A0A7S4ICK2_9EUKA (Hypothetical protein n=1 Tax=Vannella sp. CB-2014 TaxID=1487602 RepID=A0A7S4ICK2_9EUKA)

HSP 1 Score: 85.9 bits (211), Expect = 1.070e-17
Identity = 45/107 (42.06%), Postives = 73/107 (68.22%), Query Frame = 1
Query:    7 GGSDVEKRKAGLVHFSHLQAVRDDDLAQARRSIAELQLQLAESENMSKLHLLQTQALKEDIRELERAQKREGANLEYLKNVVVKYMEGGDHDVRLPPLRLLCLSFSP 327
            G      +   L+HF+ ++A+ +D+  ++++ I +L   L ES+++++L+ +Q   LKEDIRELER++KRE ANL+YLKNV+VKYME  D +  LP +  + L F+P
Sbjct:  186 GNRKEPPKDKNLLHFAQVEALHEDEKKRSQQKIEDLSRLLEESQSINRLNKIQVNGLKEDIRELERSRKREDANLDYLKNVIVKYMETHDKEALLPVISTI-LQFNP 291          
BLAST of mRNA_M-pyrifera_M_contig109503.1991.1 vs. uniprot
Match: A0A0D2VZR8_CAPO3 (GRIP domain-containing protein (Fragment) n=1 Tax=Capsaspora owczarzaki (strain ATCC 30864) TaxID=595528 RepID=A0A0D2VZR8_CAPO3)

HSP 1 Score: 79.7 bits (195), Expect = 4.090e-15
Identity = 45/88 (51.14%), Postives = 56/88 (63.64%), Query Frame = 1
Query:    1 PPGGSDVEKRKAGLVHFSHLQAVRDDDLAQARRSIAELQLQLAESENMSKLHLLQTQALKEDIRELERAQKREGANLEYLKNVVVKYM 264
            PP  + V      LVH + +QA RD++LA ARRS  EL+ + AE E   + HL Q Q LK++IR  ER  KR   NLEYLKNVVV+YM
Sbjct:  882 PPNSARVASEMNHLVHLATMQAKRDEELAAARRSRRELEERAAEVEERERKHLEQIQVLKDEIRRAERNDKRSNVNLEYLKNVVVRYM 969          
BLAST of mRNA_M-pyrifera_M_contig109503.1991.1 vs. uniprot
Match: A0A8J4V4L4_9ROSI (GRIP domain-containing protein n=1 Tax=Castanea mollissima TaxID=60419 RepID=A0A8J4V4L4_9ROSI)

HSP 1 Score: 74.3 bits (181), Expect = 1.730e-14
Identity = 47/111 (42.34%), Postives = 69/111 (62.16%), Query Frame = 1
Query:   13 SDVEKRKAGLVHFS--HL----QAVRDDDLAQARRSIAELQLQLAESENMSKLHLLQTQALKEDIRELERAQKREGANLEYLKNVVVKYMEGGDHDVRLPPLRLLCLSFSP 327
            + VE  K  L H    HL    QA R+++LAQ++R I  LQ ++ E E  ++LH  Q   LK ++R +ER QKREG ++ YLKNV++K +E G+ +  LP + +L L FSP
Sbjct:   14 ASVESVKGELAHLKREHLLARQQAQREEELAQSQRHILALQEEIEELERKNRLHSQQEAMLKIELRNMERMQKREGVDMTYLKNVILKLLETGEVEALLPVIGML-LQFSP 123          
BLAST of mRNA_M-pyrifera_M_contig109503.1991.1 vs. uniprot
Match: A0A0K9PII1_ZOSMR (Protein GRIP (Fragment) n=1 Tax=Zostera marina TaxID=29655 RepID=A0A0K9PII1_ZOSMR)

HSP 1 Score: 75.5 bits (184), Expect = 8.400e-14
Identity = 43/105 (40.95%), Postives = 66/105 (62.86%), Query Frame = 1
Query:   13 SDVEKRKAGLVHFSHLQAVRDDDLAQARRSIAELQLQLAESENMSKLHLLQTQALKEDIRELERAQKREGANLEYLKNVVVKYMEGGDHDVRLPPLRLLCLSFSP 327
            SD+   +  ++  +  QA R+D+L Q++R I  LQ ++ E E  ++LH  Q   LKE++R +ER  KREG ++ YLKNV++K +E G+ D  LP +  L L FSP
Sbjct:  213 SDIAAAEQQILILARQQAQREDELTQSQRHIMALQEEIVELERENRLHSQQEAMLKEEVRNVERNHKREGVDMTYLKNVILKLLETGEVDALLPVVGTL-LQFSP 316          
BLAST of mRNA_M-pyrifera_M_contig109503.1991.1 vs. uniprot
Match: A0A2P6RLB5_ROSCH (Putative GRIP domain-containing protein n=1 Tax=Rosa chinensis TaxID=74649 RepID=A0A2P6RLB5_ROSCH)

HSP 1 Score: 72.8 bits (177), Expect = 1.230e-13
Identity = 41/108 (37.96%), Postives = 68/108 (62.96%), Query Frame = 1
Query:    4 PGGSDVEKRKAGLVHFSHLQAVRDDDLAQARRSIAELQLQLAESENMSKLHLLQTQALKEDIRELERAQKREGANLEYLKNVVVKYMEGGDHDVRLPPLRLLCLSFSP 327
            P        +  ++  +  QA R+++LAQ++R I  LQ ++ E E+ ++LH  Q   LK ++R +ER+QKREG ++ YLKNV++K +E G+ +  LP + +L L FSP
Sbjct:   44 PSSLSTSALEQQILILARQQAQREEELAQSQRHILALQEEIEELEHENRLHSQQETMLKTELRNMERSQKREGVDMTYLKNVILKLLETGEVEALLPVVGML-LQFSP 150          
BLAST of mRNA_M-pyrifera_M_contig109503.1991.1 vs. uniprot
Match: B9S6T3_RICCO (GTP binding protein, putative n=3 Tax=Ricinus communis TaxID=3988 RepID=B9S6T3_RICCO)

HSP 1 Score: 75.1 bits (183), Expect = 1.660e-13
Identity = 42/96 (43.75%), Postives = 65/96 (67.71%), Query Frame = 1
Query:   40 LVHFSHLQAVRDDDLAQARRSIAELQLQLAESENMSKLHLLQTQALKEDIRELERAQKREGANLEYLKNVVVKYMEGGDHDVRLPPLRLLCLSFSP 327
            ++  +  QA R+++LAQ++R I  LQ ++ E E  ++LH  Q   LK ++R +ER QKREG +L YLKNV++K +E G+ +V LP + +L L FSP
Sbjct:  647 ILLLARQQAQREEELAQSQRHILALQEEIEELERENRLHTQQEAMLKTELRNMERTQKREGVDLTYLKNVIMKLLETGEVEVLLPVIAML-LQFSP 741          
BLAST of mRNA_M-pyrifera_M_contig109503.1991.1 vs. uniprot
Match: A0A251SHY7_HELAN (Putative GRIP domain-containing protein n=2 Tax=Heliantheae alliance TaxID=911341 RepID=A0A251SHY7_HELAN)

HSP 1 Score: 75.1 bits (183), Expect = 1.660e-13
Identity = 43/105 (40.95%), Postives = 69/105 (65.71%), Query Frame = 1
Query:   13 SDVEKRKAGLVHFSHLQAVRDDDLAQARRSIAELQLQLAESENMSKLHLLQTQALKEDIRELERAQKREGANLEYLKNVVVKYMEGGDHDVRLPPLRLLCLSFSP 327
            S+    +  ++  +  QA R+++LAQ++R I  LQ +L E E+ ++LH  Q   LKE++R +ER++KREG ++ YLKNV+VK +E G+    LP + +L L FSP
Sbjct:  646 SNTSVAEQQILILARQQAQREEELAQSQRHILALQEELEELEHENRLHSQQEAMLKEELRNMERSKKREGVDMTYLKNVIVKLLETGEVGALLPVIAML-LQFSP 749          
BLAST of mRNA_M-pyrifera_M_contig109503.1991.1 vs. uniprot
Match: A0A0V0IVU0_SOLCH (GRIP domain-containing protein n=8 Tax=Solanum TaxID=4107 RepID=A0A0V0IVU0_SOLCH)

HSP 1 Score: 74.7 bits (182), Expect = 2.260e-13
Identity = 43/105 (40.95%), Postives = 71/105 (67.62%), Query Frame = 1
Query:   13 SDVEKRKAGLVHFSHLQAVRDDDLAQARRSIAELQLQLAESENMSKLHLLQTQALKEDIRELERAQKREGANLEYLKNVVVKYMEGGDHDVRLPPLRLLCLSFSP 327
            SD +++   ++  +  QA R+++LAQ++R I  LQ ++ E E  ++LH  Q   LKE++R ++R+QKREG +L YLKNV++K +E G+ +  LP + +L L FSP
Sbjct:  656 SDADQQ---ILVLARQQAQREEELAQSQRHILALQEEIEELERENRLHSQQEAKLKEELRNMDRSQKREGVDLTYLKNVILKLLETGEVEALLPVVAML-LQFSP 756          
BLAST of mRNA_M-pyrifera_M_contig109503.1991.1 vs. uniprot
Match: G7K011_MEDTR (GRIP domain protein n=1 Tax=Medicago truncatula TaxID=3880 RepID=G7K011_MEDTR)

HSP 1 Score: 74.7 bits (182), Expect = 2.290e-13
Identity = 43/105 (40.95%), Postives = 71/105 (67.62%), Query Frame = 1
Query:   13 SDVEKRKAGLVHFSHLQAVRDDDLAQARRSIAELQLQLAESENMSKLHLLQTQALKEDIRELERAQKREGANLEYLKNVVVKYMEGGDHDVRLPPLRLLCLSFSP 327
            SD E +   ++  +  QA R+++LAQ++R I  LQ ++ E E+ ++LH  Q   LK ++R +ERA+KREG ++ YLKN+++K +E G+ +V LP + +L L FSP
Sbjct:  783 SDAEHQ---ILILARQQAQREEELAQSQRHILALQEEIEELEHENRLHSQQEAMLKSELRNMERAKKREGVDMTYLKNIILKLLETGEVEVLLPVIGML-LQFSP 883          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig109503.1991.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
L8H1Q7_ACACA3.210e-1845.10GRIP domain containing protein n=1 Tax=Acanthamoeb... [more]
A0A7S4ICK2_9EUKA1.070e-1742.06Hypothetical protein n=1 Tax=Vannella sp. CB-2014 ... [more]
A0A0D2VZR8_CAPO34.090e-1551.14GRIP domain-containing protein (Fragment) n=1 Tax=... [more]
A0A8J4V4L4_9ROSI1.730e-1442.34GRIP domain-containing protein n=1 Tax=Castanea mo... [more]
A0A0K9PII1_ZOSMR8.400e-1440.95Protein GRIP (Fragment) n=1 Tax=Zostera marina Tax... [more]
A0A2P6RLB5_ROSCH1.230e-1337.96Putative GRIP domain-containing protein n=1 Tax=Ro... [more]
B9S6T3_RICCO1.660e-1343.75GTP binding protein, putative n=3 Tax=Ricinus comm... [more]
A0A251SHY7_HELAN1.660e-1340.95Putative GRIP domain-containing protein n=2 Tax=He... [more]
A0A0V0IVU0_SOLCH2.260e-1340.95GRIP domain-containing protein n=8 Tax=Solanum Tax... [more]
G7K011_MEDTR2.290e-1340.95GRIP domain protein n=1 Tax=Medicago truncatula Ta... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig109503contigM-pyrifera_M_contig109503:179..505 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score81.3
Seed ortholog evalue3.2e-13
Seed eggNOG ortholog192875.XP_004343098.1
KEGG koko:K08582,ko:K20281,ko:K20282
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Ran GTPase binding
EggNOG OGsCOG5171@1,KOG0864@2759
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko01002,ko04131
Exons1
Model size327
Cds size327
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815605.4471126-CDS-M-pyrifera_M_contig109503:178..5051622815605.4471126-CDS-M-pyrifera_M_contig109503:178..505Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig109503 179..505 +
1692277484.0776823-CDS-M-pyrifera_M_contig109503:178..5051692277484.0776823-CDS-M-pyrifera_M_contig109503:178..505Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig109503 179..505 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig109503.1991.1prot_M-pyrifera_M_contig109503.1991.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig109503 179..505 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig109503.1991.1

>prot_M-pyrifera_M_contig109503.1991.1 ID=prot_M-pyrifera_M_contig109503.1991.1|Name=mRNA_M-pyrifera_M_contig109503.1991.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=109bp
PPGGSDVEKRKAGLVHFSHLQAVRDDDLAQARRSIAELQLQLAESENMSK
LHLLQTQALKEDIRELERAQKREGANLEYLKNVVVKYMEGGDHDVRLPPL
RLLCLSFSP
back to top

mRNA from alignment at M-pyrifera_M_contig109503:179..505+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig109503.1991.1 ID=mRNA_M-pyrifera_M_contig109503.1991.1|Name=mRNA_M-pyrifera_M_contig109503.1991.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=327bp|location=Sequence derived from alignment at M-pyrifera_M_contig109503:179..505+ (Macrocystis pyrifera P11B4 male)
CCGCCGGGAGGGAGCGACGTAGAGAAGCGCAAGGCGGGCCTCGTCCACTT CTCGCACCTCCAGGCGGTGCGTGACGACGACCTCGCCCAGGCACGGCGCA GCATCGCGGAACTGCAGCTACAGCTGGCGGAGAGCGAGAACATGAGCAAG CTGCACCTCCTCCAGACCCAGGCCCTCAAGGAGGACATCCGCGAGCTCGA GCGTGCGCAGAAGCGCGAGGGCGCCAACCTCGAGTACCTCAAGAACGTCG TCGTCAAGTACATGGAGGGCGGCGACCACGACGTTCGTCTCCCACCGCTG CGCTTGCTCTGTCTCTCTTTCTCCCCC
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig109503:179..505+

>mRNA_M-pyrifera_M_contig109503.1991.1 ID=mRNA_M-pyrifera_M_contig109503.1991.1|Name=mRNA_M-pyrifera_M_contig109503.1991.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=654bp|location=Sequence derived from alignment at M-pyrifera_M_contig109503:179..505+ (Macrocystis pyrifera P11B4 male)
CCGCCGGGAGGGAGCGACGTAGAGAAGCGCAAGGCGGGCCTCGTCCACTT
CTCGCACCTCCAGGCGGTGCGTGACGACGACCTCGCCCAGGCACGGCGCA
GCATCGCGGAACTGCAGCTACAGCTGGCGGAGAGCGAGAACATGAGCAAG
CTGCACCTCCTCCAGACCCAGGCCCTCAAGGAGGACATCCGCGAGCTCGA
GCGTGCGCAGAAGCGCGAGGGCGCCAACCTCGAGTACCTCAAGAACGTCG
TCGTCAAGTACATGGAGGGCGGCGACCACGACGTTCGTCTCCCACCGCTG
CGCTTGCTCTGTCTCTCTTTCTCCCCCCCGCCGGGAGGGAGCGACGTAGA
GAAGCGCAAGGCGGGCCTCGTCCACTTCTCGCACCTCCAGGCGGTGCGTG
ACGACGACCTCGCCCAGGCACGGCGCAGCATCGCGGAACTGCAGCTACAG
CTGGCGGAGAGCGAGAACATGAGCAAGCTGCACCTCCTCCAGACCCAGGC
CCTCAAGGAGGACATCCGCGAGCTCGAGCGTGCGCAGAAGCGCGAGGGCG
CCAACCTCGAGTACCTCAAGAACGTCGTCGTCAAGTACATGGAGGGCGGC
GACCACGACGTTCGTCTCCCACCGCTGCGCTTGCTCTGTCTCTCTTTCTC
CCCC
back to top