mRNA_M-pyrifera_M_contig85365.19898.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig85365.19898.1
Unique NamemRNA_M-pyrifera_M_contig85365.19898.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig85365.19898.1 vs. uniprot
Match: A0A131ZZ05_SARSC (2OG-Fe(II) oxygenase-like protein 1 n=2 Tax=Sarcoptes scabiei TaxID=52283 RepID=A0A131ZZ05_SARSC)

HSP 1 Score: 65.9 bits (159), Expect = 4.090e-11
Identity = 26/39 (66.67%), Postives = 30/39 (76.92%), Query Frame = 1
Query:   10 ACIVCGATEKLRSCSRCKQVRYCGKEHQLAHWKEHKATC 126
            +C +CGATE L+SC RC Q  YC +EHQLAHWKEHK  C
Sbjct:    2 SCEICGATENLKSCGRCLQANYCSREHQLAHWKEHKRWC 40          
BLAST of mRNA_M-pyrifera_M_contig85365.19898.1 vs. uniprot
Match: A0A1Y3BLL3_EURMA (MYND-type domain-containing protein n=1 Tax=Euroglyphus maynei TaxID=6958 RepID=A0A1Y3BLL3_EURMA)

HSP 1 Score: 62.0 bits (149), Expect = 1.400e-10
Identity = 24/39 (61.54%), Postives = 29/39 (74.36%), Query Frame = 1
Query:   10 ACIVCGATEKLRSCSRCKQVRYCGKEHQLAHWKEHKATC 126
            +C VCG T+ L+SC RC +  YCG+EHQL HWKEHK  C
Sbjct:    2 SCEVCGKTDNLKSCGRCLKANYCGREHQLEHWKEHKRWC 40          
BLAST of mRNA_M-pyrifera_M_contig85365.19898.1 vs. uniprot
Match: UPI001F0FBA97 (egl nine homolog 1-like n=1 Tax=Dermatophagoides farinae TaxID=6954 RepID=UPI001F0FBA97)

HSP 1 Score: 63.9 bits (154), Expect = 1.990e-10
Identity = 25/39 (64.10%), Postives = 30/39 (76.92%), Query Frame = 1
Query:   10 ACIVCGATEKLRSCSRCKQVRYCGKEHQLAHWKEHKATC 126
            +C VCG T+ L+SC RC +  YCG+EHQLAHWKEHK  C
Sbjct:    2 SCEVCGKTDNLKSCGRCLKANYCGREHQLAHWKEHKRWC 40          
BLAST of mRNA_M-pyrifera_M_contig85365.19898.1 vs. uniprot
Match: UPI001D06CCCD (egl nine homolog 1 isoform X1 n=2 Tax=Coccinella septempunctata TaxID=41139 RepID=UPI001D06CCCD)

HSP 1 Score: 59.3 bits (142), Expect = 8.540e-9
Identity = 25/42 (59.52%), Postives = 29/42 (69.05%), Query Frame = 1
Query:   10 ACIVCGATEKLRSCSRCKQVRYCGKEHQLAHWKEHKATCAPP 135
            +C VCG T+KL SCSRCK + YC KEHQ   WK+HK  C  P
Sbjct:    8 SCAVCGHTDKLYSCSRCKLIFYCSKEHQKKDWKKHKVDCGKP 49          
BLAST of mRNA_M-pyrifera_M_contig85365.19898.1 vs. uniprot
Match: A0A6V7IMD0_9HYME (MYND-type domain-containing protein (Fragment) n=1 Tax=Bracon brevicornis TaxID=1563983 RepID=A0A6V7IMD0_9HYME)

HSP 1 Score: 56.2 bits (134), Expect = 1.030e-8
Identity = 23/38 (60.53%), Postives = 27/38 (71.05%), Query Frame = 1
Query:   13 CIVCGATEKLRSCSRCKQVRYCGKEHQLAHWKEHKATC 126
            C VCG+T++L  CSRCK V YC KEHQ   W+ HKA C
Sbjct:   24 CAVCGSTDRLLRCSRCKSVVYCTKEHQKLDWRRHKADC 61          
BLAST of mRNA_M-pyrifera_M_contig85365.19898.1 vs. uniprot
Match: A0A059P1D8_9INSE (EGL nine-like protein 1 (Fragment) n=1 Tax=Neocloeon triangulifer TaxID=2078957 RepID=A0A059P1D8_9INSE)

HSP 1 Score: 58.9 bits (141), Expect = 1.110e-8
Identity = 28/54 (51.85%), Postives = 34/54 (62.96%), Query Frame = 1
Query:   10 ACIVCGATEKLRSCSRCKQVRYCGKEHQLAHWKEHKATCAPPKAGSVPTKQAAA 171
            AC +CG+ E L  CSRC+QV YC K+HQ AHWK+HK  C        PT +A A
Sbjct:    6 ACELCGSRENLLRCSRCRQVWYCCKDHQKAHWKKHKRACVQRSNVPGPTPEAPA 59          
BLAST of mRNA_M-pyrifera_M_contig85365.19898.1 vs. uniprot
Match: UPI001CA87D02 (uncharacterized protein LOC122509580 n=1 Tax=Leptopilina heterotoma TaxID=63436 RepID=UPI001CA87D02)

HSP 1 Score: 58.9 bits (141), Expect = 1.180e-8
Identity = 23/38 (60.53%), Postives = 28/38 (73.68%), Query Frame = 1
Query:   13 CIVCGATEKLRSCSRCKQVRYCGKEHQLAHWKEHKATC 126
            CIVC  TEKL+ CSRC+ + YCG+ HQ +HW EHK  C
Sbjct:   10 CIVCKKTEKLKRCSRCQMISYCGEVHQKSHWNEHKNIC 47          
BLAST of mRNA_M-pyrifera_M_contig85365.19898.1 vs. uniprot
Match: UPI00143D1E77 (uncharacterized protein LOC117182020 n=1 Tax=Belonocnema kinseyi TaxID=2817044 RepID=UPI00143D1E77)

HSP 1 Score: 58.5 bits (140), Expect = 1.470e-8
Identity = 22/38 (57.89%), Postives = 26/38 (68.42%), Query Frame = 1
Query:   13 CIVCGATEKLRSCSRCKQVRYCGKEHQLAHWKEHKATC 126
            C +C AT  L+ CSRC  + YCGKEHQ+ HWK HK  C
Sbjct:   26 CFICKATSSLKRCSRCNMISYCGKEHQMQHWKFHKDIC 63          
BLAST of mRNA_M-pyrifera_M_contig85365.19898.1 vs. uniprot
Match: UPI00158C4E00 (egl nine homolog 1 n=1 Tax=Chelonus insularis TaxID=460826 RepID=UPI00158C4E00)

HSP 1 Score: 58.5 bits (140), Expect = 1.590e-8
Identity = 23/39 (58.97%), Postives = 27/39 (69.23%), Query Frame = 1
Query:   10 ACIVCGATEKLRSCSRCKQVRYCGKEHQLAHWKEHKATC 126
            AC++CG T+K+  CSRCK   YC KEHQ   WK HKA C
Sbjct:   24 ACVICGKTDKVLRCSRCKSTVYCSKEHQKFDWKNHKAVC 62          
BLAST of mRNA_M-pyrifera_M_contig85365.19898.1 vs. uniprot
Match: A0A835W142_CHLIN (MYND-type domain-containing protein n=2 Tax=Chlamydomonas incerta TaxID=51695 RepID=A0A835W142_CHLIN)

HSP 1 Score: 58.5 bits (140), Expect = 1.600e-8
Identity = 31/57 (54.39%), Postives = 35/57 (61.40%), Query Frame = 1
Query:   13 CIVCGAT-EKLRSCSRCKQVRYCGKEHQLAHWKEHKATCAPPKAGSVPTKQAAAPAA 180
            C+ CG    K + CSRCK VRYCG+E Q AHWKEHK  C  PK  +   K AA  AA
Sbjct:  483 CVACGKMYHKTQLCSRCKSVRYCGRECQAAHWKEHKQEC--PKLAAAAAKDAAGEAA 537          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig85365.19898.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A131ZZ05_SARSC4.090e-1166.672OG-Fe(II) oxygenase-like protein 1 n=2 Tax=Sarcop... [more]
A0A1Y3BLL3_EURMA1.400e-1061.54MYND-type domain-containing protein n=1 Tax=Eurogl... [more]
UPI001F0FBA971.990e-1064.10egl nine homolog 1-like n=1 Tax=Dermatophagoides f... [more]
UPI001D06CCCD8.540e-959.52egl nine homolog 1 isoform X1 n=2 Tax=Coccinella s... [more]
A0A6V7IMD0_9HYME1.030e-860.53MYND-type domain-containing protein (Fragment) n=1... [more]
A0A059P1D8_9INSE1.110e-851.85EGL nine-like protein 1 (Fragment) n=1 Tax=Neocloe... [more]
UPI001CA87D021.180e-860.53uncharacterized protein LOC122509580 n=1 Tax=Lepto... [more]
UPI00143D1E771.470e-857.89uncharacterized protein LOC117182020 n=1 Tax=Belon... [more]
UPI00158C4E001.590e-858.97egl nine homolog 1 n=1 Tax=Chelonus insularis TaxI... [more]
A0A835W142_CHLIN1.600e-854.39MYND-type domain-containing protein n=2 Tax=Chlamy... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig85365contigM-pyrifera_M_contig85365:218..397 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size180
Cds size180
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816762.4663298-CDS-M-pyrifera_M_contig85365:217..3971622816762.4663298-CDS-M-pyrifera_M_contig85365:217..397Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig85365 218..397 +
1692278163.5297384-CDS-M-pyrifera_M_contig85365:217..3971692278163.5297384-CDS-M-pyrifera_M_contig85365:217..397Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig85365 218..397 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig85365.19898.1prot_M-pyrifera_M_contig85365.19898.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig85365 218..397 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig85365.19898.1

>prot_M-pyrifera_M_contig85365.19898.1 ID=prot_M-pyrifera_M_contig85365.19898.1|Name=mRNA_M-pyrifera_M_contig85365.19898.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=60bp
MARACIVCGATEKLRSCSRCKQVRYCGKEHQLAHWKEHKATCAPPKAGSV
PTKQAAAPAA
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mRNA from alignment at M-pyrifera_M_contig85365:218..397+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig85365.19898.1 ID=mRNA_M-pyrifera_M_contig85365.19898.1|Name=mRNA_M-pyrifera_M_contig85365.19898.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=180bp|location=Sequence derived from alignment at M-pyrifera_M_contig85365:218..397+ (Macrocystis pyrifera P11B4 male)
ATGGCGCGTGCTTGCATTGTGTGTGGCGCCACCGAGAAGCTGCGAAGTTG CTCAAGATGCAAGCAGGTGCGGTATTGTGGGAAGGAGCACCAACTCGCGC ACTGGAAGGAGCACAAGGCAACCTGCGCTCCCCCGAAGGCCGGCAGCGTA CCCACCAAGCAAGCAGCTGCCCCTGCCGCT
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig85365:218..397+

>mRNA_M-pyrifera_M_contig85365.19898.1 ID=mRNA_M-pyrifera_M_contig85365.19898.1|Name=mRNA_M-pyrifera_M_contig85365.19898.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=360bp|location=Sequence derived from alignment at M-pyrifera_M_contig85365:218..397+ (Macrocystis pyrifera P11B4 male)
ATGGCGCGTGCTTGCATTGTGTGTGGCGCCACCGAGAAGCTGCGAAGTTG
CTCAAGATGCAAGCAGGTGCGGTATTGTGGGAAGGAGCACCAACTCGCGC
ACTGGAAGGAGCACAAGGCAACCTGCGCTCCCCCGAAGGCCGGCAGCGTA
CCCACCAAGCAAGCAGCTGCCCCTGCCGCTATGGCGCGTGCTTGCATTGT
GTGTGGCGCCACCGAGAAGCTGCGAAGTTGCTCAAGATGCAAGCAGGTGC
GGTATTGTGGGAAGGAGCACCAACTCGCGCACTGGAAGGAGCACAAGGCA
ACCTGCGCTCCCCCGAAGGCCGGCAGCGTACCCACCAAGCAAGCAGCTGC
CCCTGCCGCT
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