mRNA_M-pyrifera_M_contig8536.19894.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig8536.19894.1
Unique NamemRNA_M-pyrifera_M_contig8536.19894.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
[Close]
BLAST of mRNA_M-pyrifera_M_contig8536.19894.1 vs. uniprot
Match: A0A6H5KDC0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDC0_9PHAE)

HSP 1 Score: 229 bits (584), Expect = 4.460e-68
Identity = 133/209 (63.64%), Postives = 151/209 (72.25%), Query Frame = 1 
Query:  226 RDSDSEPESVIAGXXXXXXXXXXXXXXXXXXXXXXXXXXXASAASSENGGEREGKGGNPTEEAGVKGGAEGGRRELE-EEKEMRTIFVGNLPTTFNPKKVKSRFKEYGAIESVRLRSVAVEGMAVDKAGDQQLVRKVCVNRGMVDKEVKSSVNAYVVYKDLASVDKALSANGADVDGKRIRVDKAKSGEYDHTRSVFLGNLPMDAGEDE 849
            RDSDSEPESVIAG       XX                  A    +E       + GN  + +G K   EG   + + EE+E RT+FVGNLPT+F PKKVK+ FKEYGA+ESVRLRSVAV+G AVDKAGDQQLVRKVCVNRGMVD+EVKSSVNAYVVYKD ASV+KAL+ANG DV GK +RVD+AKSGEYDHTRSVFLGNLPMDA E+E
Sbjct:  241 RDSDSEPESVIAGQGGDSSDXXMDDIDEGEEKDNNGVAMAAGRGKAEV------EAGNTEKASGAK--EEGSNDDKDDEERESRTVFVGNLPTSFTPKKVKAAFKEYGAVESVRLRSVAVKGTAVDKAGDQQLVRKVCVNRGMVDEEVKSSVNAYVVYKDGASVEKALAANGTDVGGKHVRVDRAKSGEYDHTRSVFLGNLPMDAAEEE 441
[Close]
BLAST of mRNA_M-pyrifera_M_contig8536.19894.1 vs. uniprot
Match: D8LFV0_ECTSI (White-brown-complex ABC transporter family (Partial) (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LFV0_ECTSI)

HSP 1 Score: 227 bits (579), Expect = 2.110e-65
Identity = 146/208 (70.19%), Postives = 163/208 (78.37%), Query Frame = 1 
Query:  226 RDSDSEPESVIAGXXXXXXXXXXXXXXXXXXXXXXXXXXXASAASSENGGEREGKGGNPTEEAGVKGGAEGGRRELEEEKEMRTIFVGNLPTTFNPKKVKSRFKEYGAIESVRLRSVAVEGMAVDKAGDQQLVRKVCVNRGMVDKEVKSSVNAYVVYKDLASVDKALSANGADVDGKRIRVDKAKSGEYDHTRSVFLGNLPMDAGEDE 849
            RDSDSEPESVIAG       XXXXXXXXXXXX XXXX    + A+    G+ E + G+ T +A                KE RT+FVGNLPT+F PKKVK+ FKEYGA+ESVRLRSVAV+GMAVDKAGDQQLVRKVCVNRGMVD+EVKSSVNAYVVYKD ASV+KAL+ANG DV GK +RVD+AKSGEYDHTRSVFLGNLPMDAGE+E
Sbjct:  251 RDSDSEPESVIAGQGGDSSDXXXXXXXXXXXXGXXXXNNGVTKAAGR--GKAEAEAGD-TAKASAPKEXXXXXXXXXXXKESRTVFVGNLPTSFTPKKVKAAFKEYGAVESVRLRSVAVQGMAVDKAGDQQLVRKVCVNRGMVDEEVKSSVNAYVVYKDCASVEKALAANGTDVGGKHVRVDRAKSGEYDHTRSVFLGNLPMDAGEEE 455
[Close]
BLAST of mRNA_M-pyrifera_M_contig8536.19894.1 vs. uniprot
Match: W7U9S2_9STRA (Rna binding protein n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7U9S2_9STRA)

HSP 1 Score: 119 bits (298), Expect = 5.610e-27
Identity = 66/132 (50.00%), Postives = 90/132 (68.18%), Query Frame = 1 
Query:  454 EEEKEMRTIFVGNLPTTFNPKKVKSRFKEYGAIESVRLRSVAVEGMAVDKAGDQQLVRKVCVNRGMVDKEVKSSVNAYVVYKDLASVDKALSANGADVDGKRIRVDKAKSGEY-DHTRSVFLGNLPMDAGED 846
            E+ KE RTIFVGNLPT+ + K+V++ FKEYG IESVR RS+A+ G  +D  G+Q+L +KV  N+ ++  + K + NAYVV+    S + A++AN   V+ K +RVD+  S    D  RSVFLGNLP DA ED
Sbjct:  204 EKAKERRTIFVGNLPTSISKKRVQNIFKEYGEIESVRFRSMALAGAKIDDHGNQRLAKKVSANKRLLS-DAKDTFNAYVVFLREDSAEAAIAANNRLVEAKHLRVDRVGSETIRDPKRSVFLGNLPFDAKED 334
[Close]
BLAST of mRNA_M-pyrifera_M_contig8536.19894.1 vs. uniprot
Match: A0A448ZNA7_9STRA (Uncharacterized protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448ZNA7_9STRA)

HSP 1 Score: 115 bits (287), Expect = 7.660e-26
Identity = 65/131 (49.62%), Postives = 88/131 (67.18%), Query Frame = 1 
Query:  460 EKEMRTIFVGNLPTTFNPKKVKSRFKEYGAIESVRLRSVAVEGMAV--DKAGDQQLVRKVCVNRGMVDKEVKSSVNAYVVYKDLASVDKALSANGA-DVDGKRIRVDKAKSGEYDHTRSVFLGNLPMDAGE 843
            E+E RTIFVGNLP T   K + + F+E G + S R+RSV V G+ +  D+AG+Q ++RKVCVN   +DK +  SV  YVV+K+LA V+KAL  N   ++ G +IRVD+A     D +RSVF+GNLP  A E
Sbjct:  118 EEEERTIFVGNLPLTTTRKGLAALFRECGPVASSRIRSVPVTGIKLPKDQAGNQNMMRKVCVNTNQIDKSLTDSVQGYVVFKELADVEKALEMNNKIELGGMKIRVDRATP-TVDPSRSVFVGNLPYAAKE 247
[Close]
BLAST of mRNA_M-pyrifera_M_contig8536.19894.1 vs. uniprot
Match: A0A1S3DRM4_DIACI (RNA-binding protein 34-like n=1 Tax=Diaphorina citri TaxID=121845 RepID=A0A1S3DRM4_DIACI)

HSP 1 Score: 107 bits (267), Expect = 2.140e-24
Identity = 61/131 (46.56%), Postives = 82/131 (62.60%), Query Frame = 1 
Query:  457 EEKEMRTIFVGNLPTTFNPKKVKSRFKEYGAIESVRLRSVAVEGMAVDKAGDQQLVRKVCVNRGMVDKEVKSSVNAYVVYKDLASVDKALSANGADVDGKRIRVDKAKSGEYDHTRSVFLGNLPMDAGEDE 849
            EE+E RTIFVGNLP   N  +V S FK YG +E+VR RSV V         D  L RK C+    V  E ++++NAYV +K+L SV+KAL  NG  +D   IRVDKA +    ++ S+F+GN+P +A E+E
Sbjct:   59 EEQESRTIFVGNLPLKINRDRVTSMFKPYGEVETVRFRSVPV--------ADITLPRKACIKMNKVH-EKRTNMNAYVRFKNLESVEKALEMNGHVIDEHTIRVDKALTTTKSNSHSIFIGNIPFEAEEEE 180
[Close]
BLAST of mRNA_M-pyrifera_M_contig8536.19894.1 vs. uniprot
Match: A0A7S4EFG3_9STRA (Hypothetical protein n=1 Tax=Pseudo-nitzschia australis TaxID=44445 RepID=A0A7S4EFG3_9STRA)

HSP 1 Score: 108 bits (271), Expect = 1.130e-23
Identity = 61/129 (47.29%), Postives = 84/129 (65.12%), Query Frame = 1 
Query:  466 EMRTIFVGNLPTTFNPKKVKSRFKEYGAIESVRLRSVAVEGMAV--DKAGDQQLVRKVCVNRGMVDKEVKSSVNAYVVYKDLASVDKALSANGA-DVDGKRIRVDKAKSGEYDHTRSVFLGNLPMDAGE 843
            E RTIFVGNLP     K++ + F+E G + S R+RSV V  + +  D+AG+Q ++RKVCVN   +DK +   V  YVV+K+L  V+KAL  N   ++DG +IRVD+A     D +RSVF+GNLP  A E
Sbjct:  103 EERTIFVGNLPLATTRKELAALFRECGPVASSRIRSVPVTSIKLPQDQAGNQNMMRKVCVNTNQIDKTLTDKVQGYVVFKNLDDVEKALQMNNKLELDGMKIRVDRATP-TVDPSRSVFVGNLPYGAKE 230
[Close]
BLAST of mRNA_M-pyrifera_M_contig8536.19894.1 vs. uniprot
Match: A0A3R7XV20_9STRA (Uncharacterized protein n=2 Tax=Peronospora effusa TaxID=542832 RepID=A0A3R7XV20_9STRA)

HSP 1 Score: 108 bits (270), Expect = 2.860e-23
Identity = 58/133 (43.61%), Postives = 87/133 (65.41%), Query Frame = 1 
Query:  451 LEEEKEMRTIFVGNLPTTFNPKKVKSRFKEYGAIESVRLRSVAVEGMAVDKAGDQQLVRKVCVNRGMVDKEVKSSVNAYVVYKDLASVDKALSANGADVDGKRIRVDKAKSGEYDHTRSVFLGNLPMDAGEDE 849
            +E+EK  RT+FVGN+      K +K+ F   G +E++RLR++ + G AVDKAG+Q+L+ KVC N+ ++    K + NAYV + +  SVD AL  NG  +  K+IRVD++K    D  RSVFLGN+P+   +D+
Sbjct:  134 IEDEKARRTVFVGNVSLDATKKDIKNHFAGCGKVENLRLRNLPIAGCAVDKAGNQKLMMKVCANKKILT-TAKDNCNAYVTFVEERSVDAALKLNGTILVQKKIRVDRSKP-VVDARRSVFLGNVPLKCTDDQ 264
[Close]
BLAST of mRNA_M-pyrifera_M_contig8536.19894.1 vs. uniprot
Match: A0A225VJJ2_9STRA (RNA-binding protein (Fragment) n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225VJJ2_9STRA)

HSP 1 Score: 105 bits (263), Expect = 5.470e-23
Identity = 57/132 (43.18%), Postives = 84/132 (63.64%), Query Frame = 1 
Query:  454 EEEKEMRTIFVGNLPTTFNPKKVKSRFKEYGAIESVRLRSVAVEGMAVDKAGDQQLVRKVCVNRGMVDKEVKSSVNAYVVYKDLASVDKALSANGADVDGKRIRVDKAKSGEYDHTRSVFLGNLPMDAGEDE 849
            EE K  RT+FVGN+      K +K+ F   G +ESVRLR + + G AVD+AG+Q+L+ KVC N+ ++    K + NAYV + D +SV+ A+  NG  +  K+IRVD A+  E D  RS+F+GN+P    +D+
Sbjct:    6 EELKSRRTVFVGNVSLDATQKDIKNHFSVCGKVESVRLRHLPIAGCAVDQAGNQKLMMKVCANKKILT-TAKDNCNAYVTFVDESSVEAAIKLNGTTLVQKKIRVDHAEP-EIDPRRSIFVGNVPFKCTDDQ 135
[Close]
BLAST of mRNA_M-pyrifera_M_contig8536.19894.1 vs. uniprot
Match: UPI001F04D481 (RNA-binding protein 34-like n=1 Tax=Xenia sp. Carnegie-2017 TaxID=2897299 RepID=UPI001F04D481)

HSP 1 Score: 103 bits (257), Expect = 1.150e-22
Identity = 60/132 (45.45%), Postives = 81/132 (61.36%), Query Frame = 1 
Query:  454 EEEKEMRTIFVGNLPTTFNPKKVKSRFKEYGAIESVRLRSVAVEGMAVDKAGDQQLVRKVCVNRGMVDKEVKSSVNAYVVYKDLASVDKALSANGADVDGKRIRVDKAKSG--EYDHTRSVFLGNLPMDAGE 843
            E E+  RTIFVGNLP +   K +K  FK+YG +ES RLRSVAV  +   K        KV V +   +   +S++NAYVV+KD  SV+KA+++NG  +    IRVD+   G  +YDH RS+F+GNL  D  E
Sbjct:   98 EPERLARTIFVGNLPLSIKRKDLKRIFKQYGEVESTRLRSVAVPDLKTPK--------KVAVIKRTFNSN-RSNINAYVVFKDKDSVEKAITSNGLKIQDLHIRVDRVDDGAKQYDHKRSIFVGNLKFDMEE 220
[Close]
BLAST of mRNA_M-pyrifera_M_contig8536.19894.1 vs. uniprot
Match: A0A3Q0IJ89_DIACI (RNA-binding protein 34-like n=1 Tax=Diaphorina citri TaxID=121845 RepID=A0A3Q0IJ89_DIACI)

HSP 1 Score: 107 bits (267), Expect = 1.650e-22
Identity = 61/131 (46.56%), Postives = 82/131 (62.60%), Query Frame = 1 
Query:  457 EEKEMRTIFVGNLPTTFNPKKVKSRFKEYGAIESVRLRSVAVEGMAVDKAGDQQLVRKVCVNRGMVDKEVKSSVNAYVVYKDLASVDKALSANGADVDGKRIRVDKAKSGEYDHTRSVFLGNLPMDAGEDE 849
            EE+E RTIFVGNLP   N  +V S FK YG +E+VR RSV V         D  L RK C+    V  E ++++NAYV +K+L SV+KAL  NG  +D   IRVDKA +    ++ S+F+GN+P +A E+E
Sbjct:  260 EEQESRTIFVGNLPLKINRDRVTSMFKPYGEVETVRFRSVPV--------ADITLPRKACIKMNKVH-EKRTNMNAYVRFKNLESVEKALEMNGHVIDEHTIRVDKALTTTKSNSHSIFIGNIPFEAEEEE 381
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig8536.19894.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KDC0_9PHAE4.460e-6863.64Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LFV0_ECTSI2.110e-6570.19White-brown-complex ABC transporter family (Partia... [more]
W7U9S2_9STRA5.610e-2750.00Rna binding protein n=1 Tax=Nannochloropsis gadita... [more]
A0A448ZNA7_9STRA7.660e-2649.62Uncharacterized protein n=1 Tax=Pseudo-nitzschia m... [more]
A0A1S3DRM4_DIACI2.140e-2446.56RNA-binding protein 34-like n=1 Tax=Diaphorina cit... [more]
A0A7S4EFG3_9STRA1.130e-2347.29Hypothetical protein n=1 Tax=Pseudo-nitzschia aust... [more]
A0A3R7XV20_9STRA2.860e-2343.61Uncharacterized protein n=2 Tax=Peronospora effusa... [more]
A0A225VJJ2_9STRA5.470e-2343.18RNA-binding protein (Fragment) n=1 Tax=Phytophthor... [more]
UPI001F04D4811.150e-2245.45RNA-binding protein 34-like n=1 Tax=Xenia sp. Carn... [more]
A0A3Q0IJ89_DIACI1.650e-2246.56RNA-binding protein 34-like n=1 Tax=Diaphorina cit... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig8536contigM-pyrifera_M_contig8536:2649..8511 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score230.7
Seed ortholog evalue8.4e-58
Seed eggNOG ortholog2880.D8LFV0
Preferred namemyef2
KEGG koko:K05679,ko:K05681
KEGG TC3.A.1.204
KEGG Pathwayko01523,ko02010,ko04976,map01523,map02010,map04976
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0005488,GO:0005515,GO:0097159,GO:1901363
EggNOG free text desc.ATPase activity, coupled to transmembrane movement of substances
EggNOG OGsCOG1131@1,KOG0061@2759,KOG0118@1,KOG0118@2759
COG Functional cat.V
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko02000,ko04090,ko04147
Exons4
Model size853
Cds size852
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig8536.19894.1prot_M-pyrifera_M_contig8536.19894.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig8536 2649..8510 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816762.2627664-CDS-M-pyrifera_M_contig8536:2648..29931622816762.2627664-CDS-M-pyrifera_M_contig8536:2648..2993Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig8536 2649..2993 +
1692278163.4023209-CDS-M-pyrifera_M_contig8536:2648..29931692278163.4023209-CDS-M-pyrifera_M_contig8536:2648..2993Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig8536 2649..2993 +
1622816762.2735043-CDS-M-pyrifera_M_contig8536:5682..59521622816762.2735043-CDS-M-pyrifera_M_contig8536:5682..5952Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig8536 5683..5952 +
1692278163.4167216-CDS-M-pyrifera_M_contig8536:5682..59521692278163.4167216-CDS-M-pyrifera_M_contig8536:5682..5952Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig8536 5683..5952 +
1622816762.2852623-CDS-M-pyrifera_M_contig8536:6627..67321622816762.2852623-CDS-M-pyrifera_M_contig8536:6627..6732Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig8536 6628..6732 +
1692278163.4279518-CDS-M-pyrifera_M_contig8536:6627..67321692278163.4279518-CDS-M-pyrifera_M_contig8536:6627..6732Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig8536 6628..6732 +
1622816762.2961435-CDS-M-pyrifera_M_contig8536:8378..85101622816762.2961435-CDS-M-pyrifera_M_contig8536:8378..8510Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig8536 8379..8510 +
1692278163.4396334-CDS-M-pyrifera_M_contig8536:8378..85101692278163.4396334-CDS-M-pyrifera_M_contig8536:8378..8510Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig8536 8379..8510 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig8536.19894.1

>prot_M-pyrifera_M_contig8536.19894.1 ID=prot_M-pyrifera_M_contig8536.19894.1|Name=mRNA_M-pyrifera_M_contig8536.19894.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=284bp
RRTLEAQKRSDIAEKRAAALAAAAAAVSGEVAAAALSEEEGEGGEVDGME
GGDEEEEEEEEEEEEDSYDDVGDEERDSDSEPESVIAGQGGDSSDEEEEE
EEAVPAVGGRGDGDKASAASSENGGEREGKGGNPTEEAGVKGGAEGGRRE
LEEEKEMRTIFVGNLPTTFNPKKVKSRFKEYGAIESVRLRSVAVEGMAVD
KAGDQQLVRKVCVNRGMVDKEVKSSVNAYVVYKDLASVDKALSANGADVD
GKRIRVDKAKSGEYDHTRSVFLGNLPMDAGEDEA
back to top

mRNA from alignment at M-pyrifera_M_contig8536:2649..8511+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig8536.19894.1 ID=mRNA_M-pyrifera_M_contig8536.19894.1|Name=mRNA_M-pyrifera_M_contig8536.19894.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=5863bp|location=Sequence derived from alignment at M-pyrifera_M_contig8536:2649..8511+ (Macrocystis pyrifera P11B4 male)
AGGCGGACTCTGGAAGCGCAGAAAAGGTCGGACATAGCGGAGAAGAGGGC
GGCGGCGTTGGCAGCGGCGGCAGCGGCCGTTTCTGGGGAGGTAGCGGCGG
CGGCTCTTAGCGAGGAGGAAGGGGAGGGGGGGGAAGTGGATGGTATGGAA
GGCGGAGATGAGGAAGAGGAAGAGGAGGAGGAGGAGGAGGAAGAGGATAG
TTATGATGATGTTGGGGACGAGGAGAGGGATTCTGATAGTGAGCCTGAGA
GCGTTATCGCCGGGCAGGGTGGAGACAGTTCAGACGAAGAGGAGGAGGAG
GAGGAGGCGGTGCCGGCGGTTGGGGGACGGGGTGACGGGGACAAGGTGAG
ACGGCCTCCGTATTTCGAGAACGGAGAACTTCAAAAATATACAGCTATGA
ACTCAAGTAGGTCTATGGTCATACGACTACGGCCATGGATGATATCGAGT
ACACCTCCCCCCCAAAAAATAATATATTAATGCACGTGGTAGGTGCGGTT
GACTTATTTTTAAGGGGTTTCGAATTGGCACTTCAGAGGGAGGGGGGCGG
GGGGTTGTTGAATACAACACGAGTATCAGCCTTACGGAACACGCTCTTTC
GTAAAACGCAATTTCCTCTTTGTCGTTGATACTGCCAACGTTCAACGTTG
TGTCTTAGCTCTAATACGGGGGGCCATAGTAAATAGGACCCACAGTACAC
ACAAAAGCCTATACATTTCCCTATTTTTTTCTAACAATATTTAGTCCTAT
TTACTAGGGTCCCCCGTAATAGCGTCAATTTTTCCCTCTTAGCACTGCAG
TCCCGCTTCGGGGATCAAACCCCTCAACTTGTAAGTATTAGTATTTCGGG
GGGCCATAGTAAACAGGACCTACGGTACACACAAACACCTGTATATTTCC
CGACTATTTACTAACGACATTTGATCCTATTTACTATGGCCCCCCGAAAA
GGGTTACGTAGACTGTCCCCAAAACTTGGATGCAGTAGTCGTCAAGGTTA
CACACCTGGGAAACAGATCATGATCTATCTGATCTATCTATCTACAGATC
ATCTAGCTCCTCACCTGCCGCTGTGAGAGCTTGTGCAGGATCTATCTATC
TGCATAGGACATACCGATCCAGCCCACGGCAGTGTGCGATAGATGATGCA
GATTGATTGTACCGGTCCCACCCGGCAACATAGCTGTAGATCATACAATA
TCGGAAATAGATGATATATCTGCCTTTAGAGATCTAGATCATGAACTGTG
GGAATCGATGATCTGTAGATGATCTGTACATGATCTGTACGTGATCTGTG
CATGGTCTTAACGAGGTGTGAAGGTTTTGGTAACCCTTTAGCTGCTGTGC
TTTCAAGAAGGGCCAACCCCAATTCTAACAATGAACCCAACTTTAGTTCC
AAGAATCGGCCAATCCTTTTTTCAAGAACGGCCCCCAACTCTATCTCCTT
TGGAGTGCGACTCGGGGAAACGAGGGTGCAGTGAGCCACTTTTGCGCCCT
TTTTTCCGACTGCATGCATGCATCCACGTTTTTTTAGGATAAAACCGCTT
TGGACTTTTTGAGTCGGATCGTGTTTTACAGTTAGTGCGTTTTCAGGACG
AAAAAACACGCCACCTGGAGCTACTGCTGTAGAGTTGGATCGTTTTTCGC
AGTACTGTACGTGGCGGAAGGGTTTTCTAAAGAGTTTTATTGGTTGGTGT
GCGGCTACCGGGAGCGCCTTGCCGGCGCCGCTTCCCCGCTCCTCCCCCCG
ATTTTCGGGAGCAGTCAGGCGTTGCGTTGTCGGCTTCGAGGGCGCGCCTA
TGGTTGCTAGCTGGCAGTTGCCGTCATGTCCATGGGAGGCATGCGTGAGG
GAGGAGGGGGAGGGGGGGGGGGGGGGTGTTGTTGGAGCGGACATGTCGCC
CGGGAGTGGAAAAGAGGGTGGCGGCGGATTCGGCTCGCCTGAGGTTGGGT
TGGTGGGTGGGGGTTAGGGTCNNNNNNNNNNGGCGCGCCGGTAGGTTTGC
GGGTGGCGGTGCCGCGTTGTGTCTGGGGGGGCGCGGGGGGGGGGGGGGGG
GGGGGGGGGGGGGGGGGGTTAGATTACTACAGTGTGTTCACCCGTGATTG
GAAGAGCGTGGTGCAGCAGCAACAAGCATCACGATGTTGCCTGTGTGCAC
TGGCGTAATATTACCAAGCGATGACAAGCATCACGATGCTGCCTGCTGGC
ACGAGTGGTGGTATTTTATCAAGCGGCTATGAAAGGGCGTGGCGCAGCAA
GCGGTACAAGTATCGCGATGCTGCCTGCCCGCGTGTGGAACGTCTCGGCA
CGTTGTGGTTCTGGATGGAGAATCGGGTAACCAACCTCTGCTGCCGGGTT
CGGGGACGGACGGACGGACGGACGGACGGAGGCGTTTCTTCTTCCCCATG
AACCCTCATGCTACCTTACCCATTTAGGACTGCAGCCCCTCTTTGAGGAC
GAACCACTCTATTTTTAAGTAGTTTGTTCCCCAAACGGGACTGCAGCCCT
AAAACGGTCCAATCCATTTTTTGGGTGACGCTCAAACGGTGCGGTGTGGT
GCGAGTTTTAATTTTCTAGGATGGTACGGTGCGGTGTGCGGTGCGATGCG
GCGCGGTGCTGTTTTTTCTTGTTCCGATAATCTTACGGTGCGCTGCGGGG
CGATTCTGTTGAAAGAAAAATGGCAGAATAGTACGGTGCGGTGCGGCGTG
GTAGAAACCGCAACGAAAAAAAACGCACCGCATCCTACGAACAAAACCGC
CCCGTGATTATCCATGCATGAAATACGCAACCCTGCCCTTTGAAAACCAA
ATATGTTTGCCCGCACATACAATACCAGGTATGGGGGTAAGTATTCGTGT
ACATACACCCACACCTGGTACAGATCAAAGCCTCCCTCCTCAACCATTGT
TGACACTTTTGGTAGTAAAGAGCCAAAAAATCACCACTCCATTTTATTTT
CGCACAAACTAAGCTTCTGTTATCAAATTTTCTTGTTTTTTGGTGGCTGT
GACGGGTCTCGCGTCCCCGCAGCCCCTGACGAAGGCGTCTGCAGCATCTT
CCGAAAACGGCGGAGAACGCGAGGGCAAGGGTGGAAACCCCACGGAAGAG
GCGGGAGTGAAGGGGGGGGCGGAGGGGGGCAGACGGGAGTTGGAGGAGGA
AAAGGAGATGCGGACTATTTTTGTGGGCAACCTCCCCACCACTTTCAACC
CGAAGAAAGTGAAAAGTCGGTTCAAGGAGTACGGAGCCATCGAGTCGGTC
CGGCTGCGATCTGTCGCGGTTGAGGGGATGGCGGTGGATAAGGCCGGGGA
TCAGGTGAGTCTGTCCCCTGTATCCCCTTTCCCTCCCGCCTTCGAAGGTC
CTCATTTATTTTTGGTTTTTTAGTTTTCTTCTTTTCGGAAAATAATGTAT
TTTTGCGGCCAAATCGGACAAGGTCGGGAGATCAGGTGAGTCTGTATTCT
GCTGTCCCTCCCCGCCTCCGACGGGTTTCCCCCCCCCCCCCTTTTTTTTA
AGAACTGCGTATGATGCACGTACATATTGCTGTTTTGGTTTGATTTGTTT
TCATTTTGTTTGTATTTGGTTTAGTTAAAGGTTTTATGTTTTGTTTCGTT
TTGTTATGTTTGTGTTTGTTTTGTGTTGTTTTGTATTCCCTCTTACTGAT
AGTATTTTTTTTTGGTGCATGGTTAGCGTAAGCTTTTTCAGCGTGTTATG
CCTTAAGCTCAGTTCAGGCGTAAGAAAGAGACCATCCCAACCCAACGAGA
AATGCTGAAATATGAAACGCTCATGTTTTCTCATGCGCCGCCGGTTTGTG
TCTTATCTCAGTGTTTTTCTAGCCCTTTGTTTATTTTATTTTTCCGTTGC
AACAACTCGGCGACAAATGCTTGGTTTCCTCGTCTCGTCTCGTGAATTTT
TTTCTGTTGCAAAAATGTCAGCGTTTTTTTTCTTTCCCTTGTGTTTGTGT
TTTGTTTTGTCGTTCTTGTGTTGTTCCAGCAATTGGTGAGGAAGGTGTGC
GTGAACCGAGGCATGGTTGACAAAGAGGTGAAGAGCAGCGTTAACGCCTA
CGTGGTGTACAAAGACCTGGCCAGCGTCGACAAGGTGAGCGATGCGCCTT
GATTGGGCAAAGTACTCAGCAGTCGGTCGGTTGAGTAAGAAAAAAAAAGG
AAAAGGAAAAGAAAAAAAAATAGACAAGTTTGATAAAATGCTGATTTAGT
CAGCAACTCAGTTCTCAGTGAGAAAAAAATGAAGAAAGAAAATGACCCTC
TTAGTGGGGAAAATTGGCCATAAAAAGTGACGATTTCAGCACCGGCCATT
GCGCGATTAGAGGGGATGATGATACAAATTTGGTGTCCACGCTACAATGC
AAGGGGCTCGTACGTCGCGGGCGCAACGTAATCGTACCCGTACCGCTCGA
CGCTCACGCTACTCGTACCGTAGATGGTTGACAACACCGAAGTTGCCAAC
CATTGTTTTGGTTGCTACCTCGGAGTTCCAAAGGATCTTTTTTAGGGAGC
AATCCCGAAGAACGTACTGTAGGTAGTCAGCAGTATGTTCAGTGAGAAAA
AAAAATCAAATAAAAAAAATGAATTAAGTAAAAATATATAAGCGATTTGA
TTGCCCGAAGTTAAAGTCAGCAGTCAGTGCAGTACCTCGTTTTTGAAAGA
GTGGCTGAATCACCAAATAATGATCGATTACAGCACTTTGCGAACGGAGA
CGAAAACGATGGTGTGCTTGCTGCTGTACGGATCGGATGAAAATCGGTTA
CGAACGCTTCCGACGAAGTGGAAGCCGACTTCGTACACAACTGACGGAAT
ACCCTGTGACCTGTAACGTAAATAGTCGGAACTCAAAGGCGCTGTCGGCG
AATTGCGCGGACGTGATACGGCAAAAGGCGTCGGAGCAAATTACAATGCG
TTGCTGTCCGAACAAGAAAAGTTTGAACCGACCATCATACGTAGCTGACC
GAATAGAAACCGAATAGGCTACGCACGTACTTGTGATACCTGACTAACGG
AACACTAAAATGTACGGTAACGGTCGGCACGCAAGGCGCTGTCGGCGAAC
GGCGTGGACGTGGATGACACGTGGACTAGAGTGACTATCACGATGGCCCG
CAATACGGTACCCCGTAATATATAGGCCCAAAAACGGGGAGAGAGGCTTC
CCAATGTATTCCTGAAGAATACAATTGTAGCATCGATGGGAAGCCTATCA
TCATCCGCATTTTTTAAACAGAGAGCATTTTCGATTCACGCAGTAGATAT
GGAGATACGACGCACCAAAGCGGGAGCTTTGGGCCTGCTTTGGGTCTATT
TGCTATGGGCCTCCGTGATATAATGTGTCACGGGCGTGATATAGAACCAC
TTCAACCGACGAGTCATGCGTAACTGACCGAACAGAAACCGAATAAAAAC
CGATTCCGATCGTAACGCACGGAAAACGAACCTATTATATATGTATCGTC
ACGGTCGGCACGCAAGGCGCTGTCGGCGAACGCCGCGGACGATGGACGGC
AAAGGGCATCTGAGTGACTTATGTCTCGAACGAAGAACCAGGTTACTGAC
CGCGAATATCACCGAATGGGCTATATATTCACAACCAAATAACACGAATA
GGCTGCATACGCACCGTAGTAAAACTGAATCGGCTACACAGGATACCTCC
TAACTGTCGCAAATATATATATATATATTATATATATATATATGATCGTG
TTTAATTCCTATACCGGTCGGGACGCAAAGGCGCTGTCGGCGAACGGCGC
GGACGTGGACGGCAAGCGCATCCGAGTGGACAAGGCCAAGAGCGGAGAGT
ATGACCACACAAGGTCCGTCTTTCTCGGCAACTTGCCCATGGACGCGGGA
GAAGACGAGGCGA
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig8536:2649..8511+

>mRNA_M-pyrifera_M_contig8536.19894.1 ID=mRNA_M-pyrifera_M_contig8536.19894.1|Name=mRNA_M-pyrifera_M_contig8536.19894.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1704bp|location=Sequence derived from alignment at M-pyrifera_M_contig8536:2649..8511+ (Macrocystis pyrifera P11B4 male)
AGGCGGACTCTGGAAGCGCAGAAAAGGTCGGACATAGCGGAGAAGAGGGC
GGCGGCGTTGGCAGCGGCGGCAGCGGCCGTTTCTGGGGAGGTAGCGGCGG
CGGCTCTTAGCGAGGAGGAAGGGGAGGGGGGGGAAGTGGATGGTATGGAA
GGCGGAGATGAGGAAGAGGAAGAGGAGGAGGAGGAGGAGGAAGAGGATAG
TTATGATGATGTTGGGGACGAGGAGAGGGATTCTGATAGTGAGCCTGAGA
GCGTTATCGCCGGGCAGGGTGGAGACAGTTCAGACGAAGAGGAGGAGGAG
GAGGAGGCGGTGCCGGCGGTTGGGGGACGGGGTGACGGGGACAAGAGGCG
GACTCTGGAAGCGCAGAAAAGGTCGGACATAGCGGAGAAGAGGGCGGCGG
CGTTGGCAGCGGCGGCAGCGGCCGTTTCTGGGGAGGTAGCGGCGGCGGCT
CTTAGCGAGGAGGAAGGGGAGGGGGGGGAAGTGGATGGTATGGAAGGCGG
AGATGAGGAAGAGGAAGAGGAGGAGGAGGAGGAGGAAGAGGATAGTTATG
ATGATGTTGGGGACGAGGAGAGGGATTCTGATAGTGAGCCTGAGAGCGTT
ATCGCCGGGCAGGGTGGAGACAGTTCAGACGAAGAGGAGGAGGAGGAGGA
GGCGGTGCCGGCGGTTGGGGGACGGGGTGACGGGGACAAGGCGTCTGCAG
CATCTTCCGAAAACGGCGGAGAACGCGAGGGCAAGGGTGGAAACCCCACG
GAAGAGGCGGGAGTGAAGGGGGGGGCGGAGGGGGGCAGACGGGAGTTGGA
GGAGGAAAAGGAGATGCGGACTATTTTTGTGGGCAACCTCCCCACCACTT
TCAACCCGAAGAAAGTGAAAAGTCGGTTCAAGGAGTACGGAGCCATCGAG
TCGGTCCGGCTGCGATCTGTCGCGGTTGAGGGGATGGCGGTGGATAAGGC
CGGGGATCAGGCGTCTGCAGCATCTTCCGAAAACGGCGGAGAACGCGAGG
GCAAGGGTGGAAACCCCACGGAAGAGGCGGGAGTGAAGGGGGGGGCGGAG
GGGGGCAGACGGGAGTTGGAGGAGGAAAAGGAGATGCGGACTATTTTTGT
GGGCAACCTCCCCACCACTTTCAACCCGAAGAAAGTGAAAAGTCGGTTCA
AGGAGTACGGAGCCATCGAGTCGGTCCGGCTGCGATCTGTCGCGGTTGAG
GGGATGGCGGTGGATAAGGCCGGGGATCAGCAATTGGTGAGGAAGGTGTG
CGTGAACCGAGGCATGGTTGACAAAGAGGTGAAGAGCAGCGTTAACGCCT
ACGTGGTGTACAAAGACCTGGCCAGCGTCGACAAGCAATTGGTGAGGAAG
GTGTGCGTGAACCGAGGCATGGTTGACAAAGAGGTGAAGAGCAGCGTTAA
CGCCTACGTGGTGTACAAAGACCTGGCCAGCGTCGACAAGGCGCTGTCGG
CGAACGGCGCGGACGTGGACGGCAAGCGCATCCGAGTGGACAAGGCCAAG
AGCGGAGAGTATGACCACACAAGGTCCGTCTTTCTCGGCAACTTGCCCAT
GGACGCGGGAGAAGACGAGGCGGCGCTGTCGGCGAACGGCGCGGACGTGG
ACGGCAAGCGCATCCGAGTGGACAAGGCCAAGAGCGGAGAGTATGACCAC
ACAAGGTCCGTCTTTCTCGGCAACTTGCCCATGGACGCGGGAGAAGACGA
GGCG
back to top