mRNA_M-pyrifera_M_contig8535.19892.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig8535.19892.1
Unique NamemRNA_M-pyrifera_M_contig8535.19892.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig8535.19892.1 vs. uniprot
Match: D7G2M6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2M6_ECTSI)

HSP 1 Score: 108 bits (269), Expect = 1.370e-29
Identity = 54/64 (84.38%), Postives = 59/64 (92.19%), Query Frame = 1 
Query:    4 SSIADASMLGSTRDIDGMGSQDNTLSFNDSDFYLNMDDVDIGPQIGQGAFSKVYLGRYLGELVS 195
            SS+ADAS+LGST++ D MGS DN LSFNDSDFYLNMDDVDIGPQIGQGAFSKVYLGRY GELV+
Sbjct:    3 SSLADASLLGSTQNGDAMGSGDNALSFNDSDFYLNMDDVDIGPQIGQGAFSKVYLGRYFGELVA 66
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BLAST of mRNA_M-pyrifera_M_contig8535.19892.1 vs. uniprot
Match: A0A6H5JRN5_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JRN5_9PHAE)

HSP 1 Score: 105 bits (263), Expect = 4.380e-25
Identity = 53/64 (82.81%), Postives = 58/64 (90.62%), Query Frame = 1 
Query:    4 SSIADASMLGSTRDIDGMGSQDNTLSFNDSDFYLNMDDVDIGPQIGQGAFSKVYLGRYLGELVS 195
            SS+ADAS LGST++ D +GS DN LSFNDSDFYLNMDDVDIGPQIGQGAFSKVYLGRY GELV+
Sbjct:    3 SSLADASFLGSTQNGDAIGSGDNALSFNDSDFYLNMDDVDIGPQIGQGAFSKVYLGRYFGELVA 66
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BLAST of mRNA_M-pyrifera_M_contig8535.19892.1 vs. uniprot
Match: A0A835ZKA0_9STRA (LISK family protein kinase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZKA0_9STRA)

HSP 1 Score: 66.2 bits (160), Expect = 3.830e-11
Identity = 30/39 (76.92%), Postives = 36/39 (92.31%), Query Frame = 1 
Query:   79 SFNDSDFYLNMDDVDIGPQIGQGAFSKVYLGRYLGELVS 195
            +F +SDFYLNMDDV +G QIGQGAFSKVY+G+YLGELV+
Sbjct:   31 AFEESDFYLNMDDVLLGAQIGQGAFSKVYVGKYLGELVA 69
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BLAST of mRNA_M-pyrifera_M_contig8535.19892.1 vs. uniprot
Match: A0A7S2SRX7_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SRX7_9STRA)

HSP 1 Score: 57.0 bits (136), Expect = 4.050e-8
Identity = 24/39 (61.54%), Postives = 33/39 (84.62%), Query Frame = 1 
Query:   79 SFNDSDFYLNMDDVDIGPQIGQGAFSKVYLGRYLGELVS 195
            SF DSD+ L++ DV+IGP +G+G FSKVY+GRY GE+V+
Sbjct:   10 SFEDSDYSLDLSDVEIGPLLGEGMFSKVYVGRYFGEVVA 48
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BLAST of mRNA_M-pyrifera_M_contig8535.19892.1 vs. uniprot
Match: A0A836CNH5_9STRA (Kinase-like domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CNH5_9STRA)

HSP 1 Score: 56.6 bits (135), Expect = 4.890e-8
Identity = 24/39 (61.54%), Postives = 34/39 (87.18%), Query Frame = 1 
Query:   79 SFNDSDFYLNMDDVDIGPQIGQGAFSKVYLGRYLGELVS 195
            +F+++D YL++ D+ +G QIGQGAFSKVY+GRY GELV+
Sbjct:    5 AFDEADLYLSLSDIILGAQIGQGAFSKVYVGRYQGELVA 43
[Close]
BLAST of mRNA_M-pyrifera_M_contig8535.19892.1 vs. uniprot
Match: D7G911_ECTSI (LISK family protein kinase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G911_ECTSI)

HSP 1 Score: 52.0 bits (123), Expect = 4.060e-6
Identity = 20/38 (52.63%), Postives = 30/38 (78.95%), Query Frame = 1 
Query:   82 FNDSDFYLNMDDVDIGPQIGQGAFSKVYLGRYLGELVS 195
            F +SDFY+  + V IGP +G+GAFS VY+G+Y G++V+
Sbjct:   12 FEESDFYVEQEQVTIGPAVGEGAFSTVYIGKYFGDVVA 49
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig8535.19892.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
D7G2M6_ECTSI1.370e-2984.38Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JRN5_9PHAE4.380e-2582.81Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835ZKA0_9STRA3.830e-1176.92LISK family protein kinase n=1 Tax=Tribonema minus... [more]
A0A7S2SRX7_9STRA4.050e-861.54Hypothetical protein (Fragment) n=1 Tax=Rhizochrom... [more]
A0A836CNH5_9STRA4.890e-861.54Kinase-like domain-containing protein (Fragment) n... [more]
D7G911_ECTSI4.060e-652.63LISK family protein kinase n=1 Tax=Ectocarpus sili... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig8535contigM-pyrifera_M_contig8535:2112..2306 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionProtein kinase-like domain
Ec32 orthologEc-11_002790.1
Exons1
Model size195
Cds size195
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816762.124412-CDS-M-pyrifera_M_contig8535:2111..23061622816762.124412-CDS-M-pyrifera_M_contig8535:2111..2306Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig8535 2112..2306 -
1692278163.3096404-CDS-M-pyrifera_M_contig8535:2111..23061692278163.3096404-CDS-M-pyrifera_M_contig8535:2111..2306Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig8535 2112..2306 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig8535.19892.1prot_M-pyrifera_M_contig8535.19892.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig8535 2112..2306 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig8535.19892.1

>prot_M-pyrifera_M_contig8535.19892.1 ID=prot_M-pyrifera_M_contig8535.19892.1|Name=mRNA_M-pyrifera_M_contig8535.19892.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=65bp
MSSIADASMLGSTRDIDGMGSQDNTLSFNDSDFYLNMDDVDIGPQIGQGA
FSKVYLGRYLGELVS
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mRNA from alignment at M-pyrifera_M_contig8535:2112..2306-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig8535.19892.1 ID=mRNA_M-pyrifera_M_contig8535.19892.1|Name=mRNA_M-pyrifera_M_contig8535.19892.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=195bp|location=Sequence derived from alignment at M-pyrifera_M_contig8535:2112..2306- (Macrocystis pyrifera P11B4 male)
ATGAGCTCCATCGCAGACGCCTCCATGCTCGGAAGCACCCGGGACATAGA
CGGCATGGGCTCGCAGGACAATACCCTCAGCTTCAACGACAGTGACTTCT
ACCTGAATATGGACGACGTTGATATCGGGCCTCAGATCGGACAGGGAGCG
TTTTCCAAGGTCTACCTCGGGCGATACCTGGGAGAGCTTGTGAGT
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig8535:2112..2306-

>mRNA_M-pyrifera_M_contig8535.19892.1 ID=mRNA_M-pyrifera_M_contig8535.19892.1|Name=mRNA_M-pyrifera_M_contig8535.19892.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=390bp|location=Sequence derived from alignment at M-pyrifera_M_contig8535:2112..2306- (Macrocystis pyrifera P11B4 male)
ATGAGCTCCATCGCAGACGCCTCCATGCTCGGAAGCACCCGGGACATAGA
CGGCATGGGCTCGCAGGACAATACCCTCAGCTTCAACGACAGTGACTTCT
ACCTGAATATGGACGACGTTGATATCGGGCCTCAGATCGGACAGGGAGCG
TTTTCCAAGGTCTACCTCGGGCGATACCTGGGAGAGCTTGTGAGTATGAG
CTCCATCGCAGACGCCTCCATGCTCGGAAGCACCCGGGACATAGACGGCA
TGGGCTCGCAGGACAATACCCTCAGCTTCAACGACAGTGACTTCTACCTG
AATATGGACGACGTTGATATCGGGCCTCAGATCGGACAGGGAGCGTTTTC
CAAGGTCTACCTCGGGCGATACCTGGGAGAGCTTGTGAGT
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