mRNA_M-pyrifera_M_contig109494.1989.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig109494.1989.1
Unique NamemRNA_M-pyrifera_M_contig109494.1989.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig109494.1989.1 vs. uniprot
Match: A0A426XGH9_ENSVE (RING-type E3 ubiquitin transferase (Fragment) n=1 Tax=Ensete ventricosum TaxID=4639 RepID=A0A426XGH9_ENSVE)

HSP 1 Score: 50.8 bits (120), Expect = 2.290e-5
Identity = 22/50 (44.00%), Postives = 30/50 (60.00%), Query Frame = 1 
Query:    1 VQKEPVETLCGHVFSAESIMDWLATGNNTCPLCRAAVTNSDLKPAHELRR 150
            + ++PV    G  +   SI  W+ATGN TCP+ RA +T+  L P H LRR
Sbjct:   27 LMRDPVTVCTGQTYDRASIESWVATGNTTCPVTRAPLTDFTLIPNHNLRR 76
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BLAST of mRNA_M-pyrifera_M_contig109494.1989.1 vs. uniprot
Match: A0A444EPS3_ENSVE (U-box domain-containing protein n=1 Tax=Ensete ventricosum TaxID=4639 RepID=A0A444EPS3_ENSVE)

HSP 1 Score: 50.8 bits (120), Expect = 2.350e-5
Identity = 22/50 (44.00%), Postives = 30/50 (60.00%), Query Frame = 1 
Query:    1 VQKEPVETLCGHVFSAESIMDWLATGNNTCPLCRAAVTNSDLKPAHELRR 150
            + ++PV    G  +   SI  W+ATGN TCP+ RA +T+  L P H LRR
Sbjct:   27 LMRDPVTVCTGQTYDRASIESWVATGNTTCPVTRAPLTDFTLIPNHNLRR 76
[Close]
BLAST of mRNA_M-pyrifera_M_contig109494.1989.1 vs. uniprot
Match: A0A445B6K5_ARAHY (RING-type E3 ubiquitin transferase n=4 Tax=Arachis TaxID=3817 RepID=A0A445B6K5_ARAHY)

HSP 1 Score: 50.8 bits (120), Expect = 2.460e-5
Identity = 22/50 (44.00%), Postives = 30/50 (60.00%), Query Frame = 1 
Query:    1 VQKEPVETLCGHVFSAESIMDWLATGNNTCPLCRAAVTNSDLKPAHELRR 150
            + ++PV    G  +   SI  W+ATGN TCP+ RA +T+  L P H LRR
Sbjct:   26 LMRDPVTVCTGQTYDRPSIESWVATGNTTCPVTRATLTDFTLIPNHTLRR 75
[Close]
BLAST of mRNA_M-pyrifera_M_contig109494.1989.1 vs. uniprot
Match: UPI00125E0A96 (U-box domain-containing protein 26-like n=1 Tax=Ipomoea triloba TaxID=35885 RepID=UPI00125E0A96)

HSP 1 Score: 50.8 bits (120), Expect = 2.460e-5
Identity = 22/50 (44.00%), Postives = 30/50 (60.00%), Query Frame = 1 
Query:    1 VQKEPVETLCGHVFSAESIMDWLATGNNTCPLCRAAVTNSDLKPAHELRR 150
            + ++PV    G  +   SI  W+ATGN TCP+ RA +T+  L P H LRR
Sbjct:   27 LMRDPVTVCTGQTYDRASIESWVATGNTTCPVTRATLTDFTLIPNHTLRR 76
[Close]
BLAST of mRNA_M-pyrifera_M_contig109494.1989.1 vs. uniprot
Match: A0A804JL31_MUSAM (RING-type E3 ubiquitin transferase n=3 Tax=Musa acuminata subsp. malaccensis TaxID=214687 RepID=A0A804JL31_MUSAM)

HSP 1 Score: 50.8 bits (120), Expect = 2.460e-5
Identity = 22/50 (44.00%), Postives = 30/50 (60.00%), Query Frame = 1 
Query:    1 VQKEPVETLCGHVFSAESIMDWLATGNNTCPLCRAAVTNSDLKPAHELRR 150
            + ++PV    G  +   SI  W+ATGN TCP+ RA +T+  L P H LRR
Sbjct:   27 LMRDPVTMCTGQTYDRASIESWMATGNTTCPVTRAPLTDFTLIPNHNLRR 76
[Close]
BLAST of mRNA_M-pyrifera_M_contig109494.1989.1 vs. uniprot
Match: UPI00053FB4C9 (U-box domain-containing protein 26 n=1 Tax=Beta vulgaris subsp. vulgaris TaxID=3555 RepID=UPI00053FB4C9)

HSP 1 Score: 50.8 bits (120), Expect = 2.470e-5
Identity = 21/50 (42.00%), Postives = 31/50 (62.00%), Query Frame = 1 
Query:    1 VQKEPVETLCGHVFSAESIMDWLATGNNTCPLCRAAVTNSDLKPAHELRR 150
            + ++PV    G  +  +SI  W+ATGN TCP+ RA +++  L P H LRR
Sbjct:   34 LMRDPVTVCTGQTYDRQSIESWVATGNTTCPVTRATLSDFSLIPNHTLRR 83
[Close]
BLAST of mRNA_M-pyrifera_M_contig109494.1989.1 vs. uniprot
Match: A0A443NU94_9MAGN (RING-type E3 ubiquitin transferase n=1 Tax=Cinnamomum micranthum f. kanehirae TaxID=337451 RepID=A0A443NU94_9MAGN)

HSP 1 Score: 50.4 bits (119), Expect = 3.360e-5
Identity = 22/50 (44.00%), Postives = 30/50 (60.00%), Query Frame = 1 
Query:    1 VQKEPVETLCGHVFSAESIMDWLATGNNTCPLCRAAVTNSDLKPAHELRR 150
            + ++PV    G  +   SI  W+ATGN TCP+ RA +T+  L P H LRR
Sbjct:   28 LMRDPVTVSTGQTYDRTSIESWIATGNTTCPVTRAILTDFTLIPNHTLRR 77
[Close]
BLAST of mRNA_M-pyrifera_M_contig109494.1989.1 vs. uniprot
Match: A0A833WGA6_JUGRE (RING-type E3 ubiquitin transferase n=5 Tax=Juglandaceae TaxID=16714 RepID=A0A833WGA6_JUGRE)

HSP 1 Score: 50.4 bits (119), Expect = 3.400e-5
Identity = 22/50 (44.00%), Postives = 30/50 (60.00%), Query Frame = 1 
Query:    1 VQKEPVETLCGHVFSAESIMDWLATGNNTCPLCRAAVTNSDLKPAHELRR 150
            + ++PV    G  +   SI  W+ATGN TCP+ RA +T+  L P H LRR
Sbjct:   79 LMRDPVTVRTGQTYDRSSIESWVATGNTTCPVTRAPLTDFTLIPNHTLRR 128
[Close]
BLAST of mRNA_M-pyrifera_M_contig109494.1989.1 vs. uniprot
Match: UPI000900CD49 (U-box domain-containing protein 26-like n=1 Tax=Ipomoea nil TaxID=35883 RepID=UPI000900CD49)

HSP 1 Score: 50.4 bits (119), Expect = 3.440e-5
Identity = 22/50 (44.00%), Postives = 30/50 (60.00%), Query Frame = 1 
Query:    1 VQKEPVETLCGHVFSAESIMDWLATGNNTCPLCRAAVTNSDLKPAHELRR 150
            + ++PV    G  +   SI  W+ATGN TCP+ RA +T+  L P H LRR
Sbjct:  153 LMRDPVTVCTGQTYDRASIESWVATGNTTCPVTRAPLTDFTLIPNHTLRR 202
[Close]
BLAST of mRNA_M-pyrifera_M_contig109494.1989.1 vs. uniprot
Match: UPI000B76E8F9 (U-box domain-containing protein 26-like n=1 Tax=Hevea brasiliensis TaxID=3981 RepID=UPI000B76E8F9)

HSP 1 Score: 50.1 bits (118), Expect = 4.590e-5
Identity = 21/50 (42.00%), Postives = 31/50 (62.00%), Query Frame = 1 
Query:    1 VQKEPVETLCGHVFSAESIMDWLATGNNTCPLCRAAVTNSDLKPAHELRR 150
            + ++PV    G  +   SI  W++TGN+TCP+ RA +T+  L P H LRR
Sbjct:   26 LMRDPVTVSTGQTYDRSSIESWVSTGNSTCPVTRAPLTDFSLIPNHTLRR 75
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig109494.1989.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 22
Match NameE-valueIdentityDescription
A0A426XGH9_ENSVE2.290e-544.00RING-type E3 ubiquitin transferase (Fragment) n=1 ... [more]
A0A444EPS3_ENSVE2.350e-544.00U-box domain-containing protein n=1 Tax=Ensete ven... [more]
A0A445B6K5_ARAHY2.460e-544.00RING-type E3 ubiquitin transferase n=4 Tax=Arachis... [more]
UPI00125E0A962.460e-544.00U-box domain-containing protein 26-like n=1 Tax=Ip... [more]
A0A804JL31_MUSAM2.460e-544.00RING-type E3 ubiquitin transferase n=3 Tax=Musa ac... [more]
UPI00053FB4C92.470e-542.00U-box domain-containing protein 26 n=1 Tax=Beta vu... [more]
A0A443NU94_9MAGN3.360e-544.00RING-type E3 ubiquitin transferase n=1 Tax=Cinnamo... [more]
A0A833WGA6_JUGRE3.400e-544.00RING-type E3 ubiquitin transferase n=5 Tax=Jugland... [more]
UPI000900CD493.440e-544.00U-box domain-containing protein 26-like n=1 Tax=Ip... [more]
UPI000B76E8F94.590e-542.00U-box domain-containing protein 26-like n=1 Tax=He... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig109494contigM-pyrifera_M_contig109494:132..395 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size264
Cds size264
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815605.3664901-CDS-M-pyrifera_M_contig109494:131..3951622815605.3664901-CDS-M-pyrifera_M_contig109494:131..395Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig109494 132..395 -
1692277484.0386007-CDS-M-pyrifera_M_contig109494:131..3951692277484.0386007-CDS-M-pyrifera_M_contig109494:131..395Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig109494 132..395 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig109494.1989.1prot_M-pyrifera_M_contig109494.1989.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig109494 132..395 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig109494.1989.1

>prot_M-pyrifera_M_contig109494.1989.1 ID=prot_M-pyrifera_M_contig109494.1989.1|Name=mRNA_M-pyrifera_M_contig109494.1989.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=88bp
VQKEPVETLCGHVFSAESIMDWLATGNNTCPLCRAAVTNSDLKPAHELRR
KLGLDDVDTSDEEFRQLINVVNAASSLDGDEEAYDMGL
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mRNA from alignment at M-pyrifera_M_contig109494:132..395-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig109494.1989.1 ID=mRNA_M-pyrifera_M_contig109494.1989.1|Name=mRNA_M-pyrifera_M_contig109494.1989.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=264bp|location=Sequence derived from alignment at M-pyrifera_M_contig109494:132..395- (Macrocystis pyrifera P11B4 male)
GTGCAGAAAGAGCCAGTGGAGACTCTGTGTGGCCATGTGTTCTCTGCAGA
GTCGATCATGGACTGGCTGGCGACGGGGAACAACACGTGCCCTCTCTGCC
GTGCGGCCGTGACGAACTCGGACCTCAAGCCTGCCCATGAGCTGAGGCGC
AAGTTGGGCCTTGACGACGTGGACACCAGTGACGAAGAGTTCAGACAGCT
CATCAACGTCGTGAATGCGGCCTCCTCGCTGGACGGCGACGAAGAGGCCT
ACGACATGGGCCTC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig109494:132..395-

>mRNA_M-pyrifera_M_contig109494.1989.1 ID=mRNA_M-pyrifera_M_contig109494.1989.1|Name=mRNA_M-pyrifera_M_contig109494.1989.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=528bp|location=Sequence derived from alignment at M-pyrifera_M_contig109494:132..395- (Macrocystis pyrifera P11B4 male)
GTGCAGAAAGAGCCAGTGGAGACTCTGTGTGGCCATGTGTTCTCTGCAGA
GTCGATCATGGACTGGCTGGCGACGGGGAACAACACGTGCCCTCTCTGCC
GTGCGGCCGTGACGAACTCGGACCTCAAGCCTGCCCATGAGCTGAGGCGC
AAGTTGGGCCTTGACGACGTGGACACCAGTGACGAAGAGTTCAGACAGCT
CATCAACGTCGTGAATGCGGCCTCCTCGCTGGACGGCGACGAAGAGGCCT
ACGACATGGGCCTCGTGCAGAAAGAGCCAGTGGAGACTCTGTGTGGCCAT
GTGTTCTCTGCAGAGTCGATCATGGACTGGCTGGCGACGGGGAACAACAC
GTGCCCTCTCTGCCGTGCGGCCGTGACGAACTCGGACCTCAAGCCTGCCC
ATGAGCTGAGGCGCAAGTTGGGCCTTGACGACGTGGACACCAGTGACGAA
GAGTTCAGACAGCTCATCAACGTCGTGAATGCGGCCTCCTCGCTGGACGG
CGACGAAGAGGCCTACGACATGGGCCTC
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