mRNA_M-pyrifera_M_contig85298.19881.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig85298.19881.1
Unique NamemRNA_M-pyrifera_M_contig85298.19881.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig85298.19881.1 vs. uniprot
Match: A0A5A8C9Y4_CAFRO (Uncharacterized protein n=3 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8C9Y4_CAFRO)

HSP 1 Score: 86.7 bits (213), Expect = 2.330e-17
Identity = 42/110 (38.18%), Postives = 67/110 (60.91%), Query Frame = 1 
Query:    4 SGAASLVREVVAQNHVLYDRDLLATGEFMKQALPPKSVVMTNDVHISPIA-ISGRTNLNSYSGWTWSHGLDAAERNRDREEVLRCATQDNNDHCYSLLRKWGVRYLLSKD 330
            SGA S++RE    +H LY    +  GEF+++ +PPKSV++ ++ H SP+  ++G  +L  Y GW WSHG D  ER+ DR  ++      N    Y  +R+WGVRY++ ++
Sbjct:  805 SGAVSVIREQ-RMSHELYGPLEIEVGEFIRKNVPPKSVMLHDNNHRSPVGMLAGYPSLAGYDGWLWSHGYDYGERHNDRNYIMDRMGDPNEATIYPKMRRWGVRYVVGEN 913
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig85298.19881.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A5A8C9Y4_CAFRO2.330e-1738.18Uncharacterized protein n=3 Tax=Cafeteria roenberg... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig85298contigM-pyrifera_M_contig85298:373..735 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size363
Cds size363
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816761.5541136-CDS-M-pyrifera_M_contig85298:372..7351622816761.5541136-CDS-M-pyrifera_M_contig85298:372..735Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig85298 373..735 -
1692278163.0001214-CDS-M-pyrifera_M_contig85298:372..7351692278163.0001214-CDS-M-pyrifera_M_contig85298:372..735Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig85298 373..735 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig85298.19881.1prot_M-pyrifera_M_contig85298.19881.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig85298 373..735 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig85298.19881.1

>prot_M-pyrifera_M_contig85298.19881.1 ID=prot_M-pyrifera_M_contig85298.19881.1|Name=mRNA_M-pyrifera_M_contig85298.19881.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=121bp
SSGAASLVREVVAQNHVLYDRDLLATGEFMKQALPPKSVVMTNDVHISPI
AISGRTNLNSYSGWTWSHGLDAAERNRDREEVLRCATQDNNDHCYSLLRK
WGVRYLLSKDIRFVDVEKANE
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mRNA from alignment at M-pyrifera_M_contig85298:373..735-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig85298.19881.1 ID=mRNA_M-pyrifera_M_contig85298.19881.1|Name=mRNA_M-pyrifera_M_contig85298.19881.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=363bp|location=Sequence derived from alignment at M-pyrifera_M_contig85298:373..735- (Macrocystis pyrifera P11B4 male)
AGCTCAGGGGCAGCTAGCTTGGTGCGTGAGGTCGTGGCGCAGAATCACGT
GCTGTATGACAGGGACTTGCTAGCGACTGGGGAGTTTATGAAACAGGCGC
TGCCTCCAAAGTCGGTGGTGATGACCAACGACGTGCACATCAGCCCCATC
GCAATCTCGGGCAGGACTAACCTCAACTCCTACTCCGGGTGGACGTGGAG
CCACGGTCTCGATGCTGCAGAGCGAAACAGAGACAGGGAAGAAGTGCTGC
GGTGTGCCACCCAGGACAACAACGACCACTGCTACTCCCTCCTCCGAAAG
TGGGGCGTGCGCTACCTCCTCTCCAAAGACATCCGCTTCGTCGACGTTGA
AAAGGCCAACGAG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig85298:373..735-

>mRNA_M-pyrifera_M_contig85298.19881.1 ID=mRNA_M-pyrifera_M_contig85298.19881.1|Name=mRNA_M-pyrifera_M_contig85298.19881.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=726bp|location=Sequence derived from alignment at M-pyrifera_M_contig85298:373..735- (Macrocystis pyrifera P11B4 male)
AGCTCAGGGGCAGCTAGCTTGGTGCGTGAGGTCGTGGCGCAGAATCACGT
GCTGTATGACAGGGACTTGCTAGCGACTGGGGAGTTTATGAAACAGGCGC
TGCCTCCAAAGTCGGTGGTGATGACCAACGACGTGCACATCAGCCCCATC
GCAATCTCGGGCAGGACTAACCTCAACTCCTACTCCGGGTGGACGTGGAG
CCACGGTCTCGATGCTGCAGAGCGAAACAGAGACAGGGAAGAAGTGCTGC
GGTGTGCCACCCAGGACAACAACGACCACTGCTACTCCCTCCTCCGAAAG
TGGGGCGTGCGCTACCTCCTCTCCAAAGACATCCGCTTCGTCGACGTTGA
AAAGGCCAACGAGAGCTCAGGGGCAGCTAGCTTGGTGCGTGAGGTCGTGG
CGCAGAATCACGTGCTGTATGACAGGGACTTGCTAGCGACTGGGGAGTTT
ATGAAACAGGCGCTGCCTCCAAAGTCGGTGGTGATGACCAACGACGTGCA
CATCAGCCCCATCGCAATCTCGGGCAGGACTAACCTCAACTCCTACTCCG
GGTGGACGTGGAGCCACGGTCTCGATGCTGCAGAGCGAAACAGAGACAGG
GAAGAAGTGCTGCGGTGTGCCACCCAGGACAACAACGACCACTGCTACTC
CCTCCTCCGAAAGTGGGGCGTGCGCTACCTCCTCTCCAAAGACATCCGCT
TCGTCGACGTTGAAAAGGCCAACGAG
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