mRNA_M-pyrifera_M_contig109492.1988.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig109492.1988.1
Unique NamemRNA_M-pyrifera_M_contig109492.1988.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig109492.1988.1 vs. uniprot
Match: A0A2D8CE16_9BACT (Uncharacterized protein n=2 Tax=Balneolaceae TaxID=1813606 RepID=A0A2D8CE16_9BACT)

HSP 1 Score: 154 bits (389), Expect = 7.450e-45
Identity = 81/146 (55.48%), Postives = 100/146 (68.49%), Query Frame = 1 
Query:    1 MDRKKFLKRVPFLGISTGLVLSGCSTGTSNDDTGGSDDLTILIEAAHVEAQAIQTYNVAVN--LLSTEAYINIANLYKSHHENHLATFNMLIQSLDGNPVNLSDVGPDSRTGNLGSNPAESDIIHLAMTLELEAADAYFEQSIAQL 432
            MDRK+FLK +P +G++ GL L+GCSTGT NDD   S D+ IL+EAA  EA AIQ+YN A    L+ST+A ++ A LY+ HH  HL  FN LI   +G  V LS+ GPD    NL  N +ESD+I LAMTLELEAA AYF QS  +L
Sbjct:    3 MDRKRFLKAIPVIGVAGGLTLTGCSTGTGNDDINVSGDVAILMEAAEREAVAIQSYNAAAESGLISTQAVLDSAVLYRDHHTEHLNIFNQLILEAEGQQVELSNFGPDPLVSNLNENSSESDVIRLAMTLELEAARAYFAQSTIEL 148
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BLAST of mRNA_M-pyrifera_M_contig109492.1988.1 vs. uniprot
Match: A0A3D1G8P6_9BACT (Uncharacterized protein n=1 Tax=Balneolaceae bacterium TaxID=2053516 RepID=A0A3D1G8P6_9BACT)

HSP 1 Score: 113 bits (282), Expect = 9.260e-29
Identity = 69/149 (46.31%), Postives = 87/149 (58.39%), Query Frame = 1 
Query:    1 MDRKKFLKRVPFLGISTGL--VLSGCSTGTSNDDTGGSD---DLTILIEAAHVEAQAIQTYNVAVNLLSTEAYINIANLYKSHHENHLATFNMLIQSLDGNPVNLSDVGPDSRTGNLGSNPAESDIIHLAMTLELEAADAYFEQSIAQL 432
            MDRK FLKR P LGI+ GL    + CST T  D  GG+D   DL IL  AA  E  AI TY  A  +L T+A ++ A  Y+ HH  HL  FN LI  L+G PV  SD   D R  ++ S   E D + LAM+LE++AA +YF+ S+  L
Sbjct:    1 MDRKAFLKRAPLLGIAGGLGFTATACSTTTGTD--GGNDVTGDLEILTNAAERECVAIATYTAAAGVLETQAVLDTAIYYRGHHSEHLEIFNNLIVDLNGEPVIESDYEADPRVADVSS---EEDAVLLAMSLEIDAAQSYFQDSVTNL 144
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BLAST of mRNA_M-pyrifera_M_contig109492.1988.1 vs. uniprot
Match: UPI001FEF1469 (ferritin-like domain-containing protein n=1 Tax=Flagellatimonas centrodinii TaxID=2806210 RepID=UPI001FEF1469)

HSP 1 Score: 58.5 bits (140), Expect = 1.080e-7
Identity = 44/140 (31.43%), Postives = 68/140 (48.57%), Query Frame = 1 
Query:    7 RKKFLKRVPFLGISTGLVLSGCST---GTSNDDTGGSDDLTILIEAAHVEAQAIQTYNV-AVNLLSTEAYINIANLYKSHHENHLATFNMLIQSLDGNPVNLSDVGP--DSRTGNLGSNPAESDIIHLAMTLELEAADAY 408
            R+ FL R   L  +   +L G        S+     ++DL IL  A  +E + I  Y + A + L ++  +++A L+K HHE H       I++L G PV  + +    DS   N+ S  +  DI+ LA  LEL A +AY
Sbjct:   15 RRAFLSRSAVLSATAVAMLGGAPLQGFAASHGSEAAANDLAILNVALGLEHEGIAAYQIGAESGLLSKPLLDVAVLFKGHHEGHREVLVQAIETLGGRPVEAAPMATYRDSGKLNVKSIRSAEDILRLAQRLELGAVNAY 154
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BLAST of mRNA_M-pyrifera_M_contig109492.1988.1 vs. uniprot
Match: A0A0C5JCX9_9RHOO (Ferritin n=2 Tax=Rugosibacter aromaticivorans TaxID=1565605 RepID=A0A0C5JCX9_9RHOO)

HSP 1 Score: 56.6 bits (135), Expect = 4.850e-7
Identity = 44/136 (32.35%), Postives = 68/136 (50.00%), Query Frame = 1 
Query:   25 RVPFLGISTGLVLSGCSTGT-------SNDDTGGSDDLTILIEAAHVEAQAIQTYNV-AVNLLSTEAYINIANLYKSHHENHLATFNMLIQSLDGNPVNLSDVGPDSRTGNLGSNPAESDIIHLAMTLELEAADAY 408
            R  FLG S GLVLS  + G        +        D+ +L  A  +E +AI  Y V A + L  +  +++A L++SHH+ H       I+ L G PV     G  ++  +     +++D++ LA TLEL AA+AY
Sbjct:    9 RRDFLGKS-GLVLSAAAVGVLAGNASLARAKANPKGDIALLNVALGLEHEAIAAYQVGAESGLLDKGVLDVAVLFQSHHKGHRDALIATIEKLGGTPVTSQANGDYAKALDANGLKSQADVLGLAATLELGAANAY 143
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig109492.1988.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A2D8CE16_9BACT7.450e-4555.48Uncharacterized protein n=2 Tax=Balneolaceae TaxID... [more]
A0A3D1G8P6_9BACT9.260e-2946.31Uncharacterized protein n=1 Tax=Balneolaceae bacte... [more]
UPI001FEF14691.080e-731.43ferritin-like domain-containing protein n=1 Tax=Fl... [more]
A0A0C5JCX9_9RHOO4.850e-732.35Ferritin n=2 Tax=Rugosibacter aromaticivorans TaxI... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig109492contigM-pyrifera_M_contig109492:172..603 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons1
Model size432
Cds size432
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815605.3338242-CDS-M-pyrifera_M_contig109492:171..6031622815605.3338242-CDS-M-pyrifera_M_contig109492:171..603Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig109492 172..603 +
1692277484.0280037-CDS-M-pyrifera_M_contig109492:171..6031692277484.0280037-CDS-M-pyrifera_M_contig109492:171..603Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig109492 172..603 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig109492.1988.1prot_M-pyrifera_M_contig109492.1988.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig109492 172..603 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig109492.1988.1

>prot_M-pyrifera_M_contig109492.1988.1 ID=prot_M-pyrifera_M_contig109492.1988.1|Name=mRNA_M-pyrifera_M_contig109492.1988.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=144bp
MDRKKFLKRVPFLGISTGLVLSGCSTGTSNDDTGGSDDLTILIEAAHVEA
QAIQTYNVAVNLLSTEAYINIANLYKSHHENHLATFNMLIQSLDGNPVNL
SDVGPDSRTGNLGSNPAESDIIHLAMTLELEAADAYFEQSIAQL
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mRNA from alignment at M-pyrifera_M_contig109492:172..603+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig109492.1988.1 ID=mRNA_M-pyrifera_M_contig109492.1988.1|Name=mRNA_M-pyrifera_M_contig109492.1988.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=432bp|location=Sequence derived from alignment at M-pyrifera_M_contig109492:172..603+ (Macrocystis pyrifera P11B4 male)
ATGGATAGAAAAAAATTTTTAAAGAGAGTTCCTTTTCTTGGAATAAGCAC
CGGACTAGTACTTTCAGGATGTAGCACCGGAACTAGTAATGACGATACTG
GAGGAAGCGACGATTTAACAATTCTTATTGAAGCTGCTCACGTAGAAGCA
CAAGCAATTCAAACCTATAATGTTGCTGTGAATCTTCTCTCTACCGAAGC
ATATATAAATATTGCTAATCTATACAAATCCCATCATGAGAATCATTTAG
CTACATTCAACATGCTTATACAATCATTAGATGGAAATCCTGTTAACTTA
TCTGATGTTGGTCCTGATTCAAGGACTGGTAATTTAGGAAGTAATCCAGC
TGAATCAGATATCATTCACTTAGCTATGACTTTAGAATTAGAAGCTGCTG
ATGCTTATTTCGAGCAGTCGATAGCTCAATTA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig109492:172..603+

>mRNA_M-pyrifera_M_contig109492.1988.1 ID=mRNA_M-pyrifera_M_contig109492.1988.1|Name=mRNA_M-pyrifera_M_contig109492.1988.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=864bp|location=Sequence derived from alignment at M-pyrifera_M_contig109492:172..603+ (Macrocystis pyrifera P11B4 male)
ATGGATAGAAAAAAATTTTTAAAGAGAGTTCCTTTTCTTGGAATAAGCAC
CGGACTAGTACTTTCAGGATGTAGCACCGGAACTAGTAATGACGATACTG
GAGGAAGCGACGATTTAACAATTCTTATTGAAGCTGCTCACGTAGAAGCA
CAAGCAATTCAAACCTATAATGTTGCTGTGAATCTTCTCTCTACCGAAGC
ATATATAAATATTGCTAATCTATACAAATCCCATCATGAGAATCATTTAG
CTACATTCAACATGCTTATACAATCATTAGATGGAAATCCTGTTAACTTA
TCTGATGTTGGTCCTGATTCAAGGACTGGTAATTTAGGAAGTAATCCAGC
TGAATCAGATATCATTCACTTAGCTATGACTTTAGAATTAGAAGCTGCTG
ATGCTTATTTCGAGCAGTCGATAGCTCAATTAATGGATAGAAAAAAATTT
TTAAAGAGAGTTCCTTTTCTTGGAATAAGCACCGGACTAGTACTTTCAGG
ATGTAGCACCGGAACTAGTAATGACGATACTGGAGGAAGCGACGATTTAA
CAATTCTTATTGAAGCTGCTCACGTAGAAGCACAAGCAATTCAAACCTAT
AATGTTGCTGTGAATCTTCTCTCTACCGAAGCATATATAAATATTGCTAA
TCTATACAAATCCCATCATGAGAATCATTTAGCTACATTCAACATGCTTA
TACAATCATTAGATGGAAATCCTGTTAACTTATCTGATGTTGGTCCTGAT
TCAAGGACTGGTAATTTAGGAAGTAATCCAGCTGAATCAGATATCATTCA
CTTAGCTATGACTTTAGAATTAGAAGCTGCTGATGCTTATTTCGAGCAGT
CGATAGCTCAATTA
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