mRNA_M-pyrifera_M_contig8528.19878.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig8528.19878.1
Unique NamemRNA_M-pyrifera_M_contig8528.19878.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig8528.19878.1 vs. uniprot
Match: A0A8J9WRC4_9CHLO (Uncharacterized protein n=1 Tax=Coccomyxa sp. Obi TaxID=2315456 RepID=A0A8J9WRC4_9CHLO)

HSP 1 Score: 48.5 bits (114), Expect = 7.370e-5
Identity = 29/70 (41.43%), Postives = 41/70 (58.57%), Query Frame = 2 
Query:    2 EKGEETVYMRREDKKLLEKILEKERAAGSKDDGR----------TELMSILGDHKLPDDVISNLLKWKSS 181
            EKGEE V+ R+ED+KLL K+LEK RA   K D +          ++L  ILG + + +D +  +L WK S
Sbjct:   55 EKGEELVHFRKEDEKLLRKLLEKVRAQADKVDTKEAEDHAQKELSDLKGILGKYNVSEDDLKAVLAWKHS 124
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig8528.19878.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A8J9WRC4_9CHLO7.370e-541.43Uncharacterized protein n=1 Tax=Coccomyxa sp. Obi ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig8528contigM-pyrifera_M_contig8528:495..2647 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size327
Cds size264
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig8528.19878.1prot_M-pyrifera_M_contig8528.19878.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig8528 495..2586 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816761.427351-CDS-M-pyrifera_M_contig8528:494..5871622816761.427351-CDS-M-pyrifera_M_contig8528:494..587Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig8528 495..587 +
1692278162.933056-CDS-M-pyrifera_M_contig8528:494..5871692278162.933056-CDS-M-pyrifera_M_contig8528:494..587Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig8528 495..587 +
1622816761.4395044-CDS-M-pyrifera_M_contig8528:2415..25861622816761.4395044-CDS-M-pyrifera_M_contig8528:2415..2586Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig8528 2416..2586 +
1692278162.9437566-CDS-M-pyrifera_M_contig8528:2415..25861692278162.9437566-CDS-M-pyrifera_M_contig8528:2415..2586Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig8528 2416..2586 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816761.4509537-UTR-M-pyrifera_M_contig8528:2586..26471622816761.4509537-UTR-M-pyrifera_M_contig8528:2586..2647Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig8528 2587..2647 +
1692278162.9562917-UTR-M-pyrifera_M_contig8528:2586..26471692278162.9562917-UTR-M-pyrifera_M_contig8528:2586..2647Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig8528 2587..2647 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig8528.19878.1

>prot_M-pyrifera_M_contig8528.19878.1 ID=prot_M-pyrifera_M_contig8528.19878.1|Name=mRNA_M-pyrifera_M_contig8528.19878.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=88bp
GKRRGDRVHAQGRQETPRKNPREGEGCRQQRRRENGADVNPWRPQASRRR
YQQPSQVEVVLMPTCTDFGKRRVTNKRRLWDMLVVNQ*
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mRNA from alignment at M-pyrifera_M_contig8528:495..2647+

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig8528.19878.1 ID=mRNA_M-pyrifera_M_contig8528.19878.1|Name=mRNA_M-pyrifera_M_contig8528.19878.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=2153bp|location=Sequence derived from alignment at M-pyrifera_M_contig8528:495..2647+ (Macrocystis pyrifera P11B4 male)
GGAAAAAGGCGAGGAGACCGTGTACATGCGCAGGGAAGACAAGAAACTCC
TCGAAAAAATCCTCGAGAAGGAGAGGGCTGCCGGCAGCAAAGAGTGAGCC
AATCATACAGCAGTACTCGTAGGATATCAACCAATCACACGGCATTACGT
GATGAGTCGTTCATGAAGCAGTACGACATGAACCACTTATGAGAGCAGGA
CGATACCTGGTATGGACTGATGATACAGCTACGGAATTGGTTTCGGTGCT
TGCATGTGTTGTTTGTCGACGTATTGTGCGACCTTTGCTCGCCTCAGCCT
GGGGTATGGCACCATGCGAAGACCCCCCCCCCCCGGGTCTGCCCCTAGCC
CGGTTCATTGCATGCGCTGTCATTACCCTCCGGGGTTGGTTCCGCCTCCG
CTCGCCGACATGAGAAGTGGGTGCTTCGCTGCGCGGGGCGCTCCTCGCGT
TCTGTTGTGTCGGCGTTTCCCGAAGTCCCGTGCCGTGTCTACGGTAGACT
GGACCAAGTCCCTTTTCCCTGTTGAGTAGACAGCTAGCTGTGGGTAATAC
GTATATATAGTCCCTCTGTTTCCTGCTTTGACCCTGGAATAAAGCAGGAC
TGTTCTCCGGGTCGGGTCGGGCCGGGTCACCTAACCCGACCCCGACCCGA
CGCATAAGATTTGAAGACCTTCTGACCCGAACCGTGAAACGAAGTTATGG
CCGATGAACAGCCCTGGAATATGTTAACCCAGGGAGTTCATTTTGGTGCT
CCGAGTCTCGTGATATTTCACAGGGTGCGCGGCTGATTTCCGTTTTTAGT
AGTGTATTGTACGTCAGTGGCTGATGCTGTTTTCTTCTCGTATTTATAAA
CTGCAGATTTTCGATTAATCAAATGACGAACCTTTCGAGATATTGCGAGG
ACACTCGGTTCGCCAACATTCGCCCTAGTGGTTGCCTGCTTTTCTTCAGG
GTGTTTTCTTATTCGCTTGGATTTATGACATGGGGTTGGGGGGGGGGGGG
GGCGACATCGTGGAACCAAAGACCCCCGCTGTTGTTGTCCGACGGTGTTA
ATATTTAATATCTAGCCGCGTATGCAATCAAACGTTCAAGCATTATCGCT
TTTTACGAGCGAGGCCTACCCCGAGCGATGGCTTGCCCTCTCTTGCATTT
TTCTTGTTGCCGGTTGCCTTCTATTTCGGTCGCTACTGAGTTCCTTTCCC
TATGCCCGTGTCCCCATTACTGGCCATTTTTTTTTCTCTTGTCGTGTCGT
TCGTTGTGGGGGCGCGTGGGAGACTCCTACAACCAATGATCGAGTGAGGT
GGCGGCAATAGGGTGTTTGCGGATACTTAGGTTGAGTTGGGTTTCTTGTA
GTATGTTCCGTACCAGGTACCTGGCATGTAGTAGCAATCCCAACACACAA
GAAAATAATTGATTTGGGAAAAACGTGACTTGAATGACGTTTATTGTCTA
TGATCTCGGGTTGGGTGACTCTGTGGGTTGGTTAGCAAACGGAGCAACTT
CTGATTCCCCTGTTTATCTTCCTCGTGTTTGTTGGTTTCAACCGTTTGTA
TAACCAACCCGATTTGAATTATCGCAAGCATCCTAATTCGAGAAGCTTGG
ACCAACCGGGTGGACACCGCCGTTTTTTTTCCTTATTCCGCCGACCCAGT
AGCAACGTGACAAGTCCTCTCCTCTTGGCGGTGGCGCCTTCTCACACGAT
TTCACGCTACGTCAAGCCGTTCACTTACCTTGCCGGGGCTCGCAGTCCTG
TCAGCCGCTCGCACGATGCGATCACACGATATCACGCGTATCTCTTCTTT
CGTATCGCGCGCGCGTGTGTGCATGTTTGTGTGTGTTGATGCTTCTCGTT
GTGACGGGAGACGCATTCCTTTATTTTTCGTTTTTTTTTCGCTTGTGTTT
CTCTTTTTGTTAACGATGCAGCGACGGGAGAACGGAGCTGATGTCAATCC
TTGGCGACCACAAGCTTCCCGACGACGTTATCAGCAACCTTCTCAAGTGG
AAGTCGTCCTGATGCCCACGTGCACCGACTTCGGCAAGAGGCGCGTCACC
AACAAGCGGCGGCTCTGGGATATGCTCGTTGTAAACCAGTAGGGAGGACA
CGATATCCCAGCAGGGCGAACATGATGGTACATAATAAAAATTATTAACT
GGG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig8528:495..2647+

>mRNA_M-pyrifera_M_contig8528.19878.1 ID=mRNA_M-pyrifera_M_contig8528.19878.1|Name=mRNA_M-pyrifera_M_contig8528.19878.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=528bp|location=Sequence derived from alignment at M-pyrifera_M_contig8528:495..2647+ (Macrocystis pyrifera P11B4 male)
GGAAAAAGGCGAGGAGACCGTGTACATGCGCAGGGAAGACAAGAAACTCC
TCGAAAAAATCCTCGAGAAGGAGAGGGCTGCCGGCAGCAAAGAGGAAAAA
GGCGAGGAGACCGTGTACATGCGCAGGGAAGACAAGAAACTCCTCGAAAA
AATCCTCGAGAAGGAGAGGGCTGCCGGCAGCAAAGACGACGGGAGAACGG
AGCTGATGTCAATCCTTGGCGACCACAAGCTTCCCGACGACGTTATCAGC
AACCTTCTCAAGTGGAAGTCGTCCTGATGCCCACGTGCACCGACTTCGGC
AAGAGGCGCGTCACCAACAAGCGGCGGCTCTGGGATATGCTCGTTGTAAA
CCAGTAGCGACGGGAGAACGGAGCTGATGTCAATCCTTGGCGACCACAAG
CTTCCCGACGACGTTATCAGCAACCTTCTCAAGTGGAAGTCGTCCTGATG
CCCACGTGCACCGACTTCGGCAAGAGGCGCGTCACCAACAAGCGGCGGCT
CTGGGATATGCTCGTTGTAAACCAGTAG
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