mRNA_M-pyrifera_M_contig85255.19875.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig85255.19875.1
Unique NamemRNA_M-pyrifera_M_contig85255.19875.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig85255.19875.1 vs. uniprot
Match: A0A7S0YG59_9CHLO (Hypothetical protein n=1 Tax=Polytomella parva TaxID=51329 RepID=A0A7S0YG59_9CHLO)

HSP 1 Score: 256 bits (654), Expect = 2.690e-81
Identity = 128/260 (49.23%), Postives = 168/260 (64.62%), Query Frame = 1
Query:    1 GMVLGLAVHNGVLLDLHFPEAFWAKLLQFPLGLSDLLSVDPELGRGLVRLLKYEED-DIEDVFCLAFEGSLNVGDKIVTEELMEGGSEVMVTQENKHRYVRMFAQWYLHDSVAPEFDAIHQGFKKVVDAPALRLLRPPELELLVVGHPHLNFKELEQVTVYDGGFHKEHPTIVRFWKVVHDLPYPLKKKLLLFTTGSSKAPLGGLKNLRFKIQRNGPHSDRLPTASTCFNTLLLPDYDSEEHLRNLLVLAIQECQGFGLQ 777
            G++ GLA++NGV+LDLHFP   + KLL   +G +DL  V P + R L  +L   ED D E+  CL F   ++   K  + +L+  GSE+ VT  N+  YV ++A+W L DS+A  FDA  +GF  +   PAL L R  ELELLVVG PHL+FK LE+   Y+GG+H +HPTI  FWKV+H +    K+K L F TGS +AP+ GL  L+  +QR  P SDRLP+A TCFN LLLPDY SE  +R  + LAIQ  QGFGL+
Sbjct:   72 GIIAGLAIYNGVILDLHFPPVVYKKLLGESIGFADLADVSPSIHRSLESILAMPEDTDFENALCLTFSVDVDHFGKSKSVDLVPNGSEIAVTAANRQLYVDLYAKWILVDSIALHFDAFARGFLAICSGPALGLFRAEELELLVVGLPHLDFKALEKAAAYEGGYHADHPTIRTFWKVLHGMQVDEKRKFLTFVTGSDRAPVRGLAALKLTVQRGEPDSDRLPSAHTCFNVLLLPDYASESKMREKMFLAIQNTQGFGLK 331          
BLAST of mRNA_M-pyrifera_M_contig85255.19875.1 vs. uniprot
Match: A0A1S3H1T8_LINUN (ubiquitin-protein ligase E3A-like n=1 Tax=Lingula unguis TaxID=7574 RepID=A0A1S3H1T8_LINUN)

HSP 1 Score: 253 bits (647), Expect = 1.500e-80
Identity = 124/258 (48.06%), Postives = 173/258 (67.05%), Query Frame = 1
Query:    1 GMVLGLAVHNGVLLDLHFPEAFWAKLLQFPLGLSDLLSVDPELGRGLVRLLKYEEDDIEDVFCLAFEGSLNVGDKIVTEELMEGGSEVMVTQENKHRYVRMFAQWYLHDSVAPEFDAIHQGFKKVVDAPALRLLRPPELELLVVGHPHLNFKELEQVTVYDGGFHKEHPTIVRFWKVVHDLPYPLKKKLLLFTTGSSKAPLGGLKNLRFKIQRNGPHSDRLPTASTCFNTLLLPDYDSEEHLRNLLVLAIQECQGFGL 774
            G+VLGLA++NGV+LD+ FP A + KL   PL L+DL+  DP LG GL+ LL YE DDIEDVFC +F+ S+   D     +L+  G+++ VTQ+NKH +VR +  + L +S+A +F+A  +GF  V    +L L  P E+ELLV G   L+F+ LE+   YD G++  H T+  FW+VVH + +  K++LL F TGS + PL GL +L   IQRNG   DRLPTA TCFN LLLP Y ++E L++ L++AI+  +GFGL
Sbjct:   50 GIVLGLALYNGVILDVRFPNALYKKLQALPLSLADLMDADPALGHGLMELLNYEGDDIEDVFCQSFQVSVQSYDLTTEVDLVPNGADIPVTQKNKHHFVRRYVDYLLTESIAKQFEAFSRGFHSVCRKESLALFSPDEIELLVCGSTELDFEALEKSAAYDDGYYVSHRTVRAFWEVVHQMTHDQKRQLLHFITGSDRVPLKGLSHLPIVIQRNGGDCDRLPTAMTCFNRLLLPSYATKEKLQSKLMVAIEHGKGFGL 307          
BLAST of mRNA_M-pyrifera_M_contig85255.19875.1 vs. uniprot
Match: W7TN24_9STRA (Ubiquitin protein ligase e3a n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TN24_9STRA)

HSP 1 Score: 272 bits (696), Expect = 3.980e-80
Identity = 137/270 (50.74%), Postives = 177/270 (65.56%), Query Frame = 1
Query:    1 GMVLGLAVHNGVLLDLHFPEAFWAKLLQFPLGLSDLLSVDPELGRGLVRLLKYEED-----------DIEDVFCLAFEGSLNVGDKIVTEELMEGGSEVMVTQENKHRYVRMFAQWYLHDSVAPEFDAIHQGFKKVVDAPALRLLRPPELELLVVGHPHLNFKELEQVTVYDGGFHKEHPTIVRFWKVVHDLPYPLKKKLLLFTTGSSKAPLGGLKNLRFKIQRNGPHSDRLPTASTCFNTLLLPDYDSEEHLRNLLVLAIQECQGFGLQ 777
            G+++GLA++N VLLDLHFP   + KLL  P+GLSDL  ++PEL  GL++LL YEED            +EDVFCL FE      D++   EL  GG ++ VT  N+H YV ++ QW L +S+A  F+A   G+  V+   ++ LLRP EL LLV G PHLN  ELE V  Y+GG+  EHP I  FW VVH++    ++  L+F TGS+KAP+GGL  L   IQR GP SD LPTA TCFNTLLLP+Y S+E L+  L+ AI EC+GFGLQ
Sbjct: 1165 GILVGLALYNSVLLDLHFPLVVYKKLLGRPVGLSDLGEIEPELMEGLLKLLDYEEDAKNTGEEGAMAKVEDVFCLNFEVDWVEFDEVKRHELKPGGKDIEVTAANRHEYVDLYVQWVLAESIAKPFEAFKAGYDHVMGGSSISLLRPEELMLLVCGTPHLNLHELEAVAKYEGGYEAEHPVIKAFWSVVHEMDLASQRNFLMFVTGSAKAPIGGLGRLALLIQRAGPDSDHLPTAHTCFNTLLLPEYGSKEKLKERLMKAISECRGFGLQ 1434          
BLAST of mRNA_M-pyrifera_M_contig85255.19875.1 vs. uniprot
Match: B7G8Z6_PHATC (Predicted protein (Fragment) n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7G8Z6_PHATC)

HSP 1 Score: 250 bits (639), Expect = 3.030e-79
Identity = 127/260 (48.85%), Postives = 175/260 (67.31%), Query Frame = 1
Query:    1 GMVLGLAVHNGVLLDLHFPEAFWAKLLQFPLGLSDLLSVDPELGRGLVRLLKYEEDDIEDVFCLAFEGSLNVGDKIVTEELMEGGSEVMVTQENKHRYVRMFAQWYLHDSVAPEFDAIHQGFKKVVDAPALRLLRPPELELLVVGHPHLNFKELEQVTVYDGGFHKEHPTIVRFWKVVHDLPYPLKKKLLLFTTGSSKAPLGGLKNLRFKIQRNGPHSDRLPTASTCFNTLLLPDY-DSEEHLRNLLVLAIQECQGFGLQ 777
            G+++GLA++N VLLD+HFP+A + KLL  PLGL D+  VD E+  GL  LL Y +DD+EDVFCL F+ +     +   +EL  GG +  VT +NK  YV ++ +W L DS+ P+++A  +GF +V++  +L LLRP +LELLVVG P L+F  L   T Y+GG+  E   +  FWK V +  +  +  LL F TGSSKAP+GGL  L FKIQ++GP SD+LP++ TCFNTLLLPDY ++   L   L  A+ EC+GFGLQ
Sbjct:   58 GVLVGLALYNSVLLDVHFPQAVYRKLLGLPLGLEDM--VDEEVKSGLQHLLDYSDDDVEDVFCLTFDVAWTDLGEEKRKELKPGGIDTPVTSDNKEEYVILYVKWLLVDSIYPQYEAFERGFMRVMENSSLDLLRPQDLELLVVGTPELDFNALMSNTQYEGGYDSESAVVRNFWKFVEETSHETRLNLLKFATGSSKAPIGGLGELSFKIQKSGPDSDQLPSSHTCFNTLLLPDYGENYNKLAVRLGRAVIECEGFGLQ 315          
BLAST of mRNA_M-pyrifera_M_contig85255.19875.1 vs. uniprot
Match: UPI000A2A8805 (ubiquitin-protein ligase E3A n=1 Tax=Exaiptasia diaphana TaxID=2652724 RepID=UPI000A2A8805)

HSP 1 Score: 249 bits (635), Expect = 9.790e-79
Identity = 126/259 (48.65%), Postives = 171/259 (66.02%), Query Frame = 1
Query:    1 GMVLGLAVHNGVLLDLHFPEAFWAKLLQFPLGLSDLLSVDPELGRGLVRLLKYEEDDIEDVFCLAFE-GSLNVGDKIVTEELMEGGSEVMVTQENKHRYVRMFAQWYLHDSVAPEFDAIHQGFKKVVDAPALRLLRPPELELLVVGHPHLNFKELEQVTVYDGGFHKEHPTIVRFWKVVHDLPYPLKKKLLLFTTGSSKAPLGGLKNLRFKIQRNGPHSDRLPTASTCFNTLLLPDYDSEEHLRNLLVLAIQECQGFGL 774
            G+VLGLA++NGV+LD+HFP   + KL    L L DL S+ P L R L +LL+++  D+EDVFC +F+  S +V  K+   +L+  GS++ VT +N+ ++V ++ ++ L DSVA +FDA  QGF KV    AL L  P ELELL+ G P L+F +L     Y+ GF  EHPTIV  W V + +    KK +L+F TGS + PL GL NL F IQ++G  SDRLP A TCFN LLLP Y SE++LR  LV+AI+  +GFGL
Sbjct:   50 GIVLGLAIYNGVILDVHFPSVIYKKLQGHALDLQDLSSLQPALSRSLRQLLEFD-GDVEDVFCYSFQVSSADVYGKVHNVDLLPNGSQIAVTNDNRQKFVELYVKYLLVDSVAKQFDAFSQGFHKVCGGSALTLFSPAELELLICGCPVLDFSQLRSAATYEDGFSPEHPTIVMLWNVFNSMTIKQKKAVLMFVTGSDRVPLKGLSNLTFIIQKHGTDSDRLPAALTCFNRLLLPPYSSEDNLRERLVVAIENSKGFGL 307          
BLAST of mRNA_M-pyrifera_M_contig85255.19875.1 vs. uniprot
Match: A0A061R381_9CHLO (Ubiquitin-protein ligase E3 A (Fragment) n=1 Tax=Tetraselmis sp. GSL018 TaxID=582737 RepID=A0A061R381_9CHLO)

HSP 1 Score: 254 bits (648), Expect = 2.670e-78
Identity = 127/259 (49.03%), Postives = 175/259 (67.57%), Query Frame = 1
Query:    1 GMVLGLAVHNGVLLDLHFPEAFWAKLLQFPLGLSDLLSVDPELGRGLVRLLKYEEDDIEDVFCLAFEGSLNVGDKIVTEELMEGGSEVMVTQENKHRYVRMFAQWYLHDSVAPEFDAIHQGFKKVVDAPALRLLRPPELELLVVGHPHLNFKELEQVTVYDGGFHKEHPTIVRFWKVVHDLPYPLKKKLLLFTTGSSKAPLGGLKNLRFKIQRNGPHSDRLPTASTCFNTLLLPDYDSEEHLRNLLVLAIQECQGFGLQ 777
            G++LGLA++N V+LD+HFP   + KL+      +DL +  PELGRGL +LL YE  D+E+VF   F+       ++ T EL+EGGS   VT EN+  YV ++ +W L DS+   F A  +GF +V D  ALR+ R  ELELL+ G PHL+F+ L++VT YDGG+ ++ PT+  FW+V+H L    KK+ LLFTTG  +AP+GGL  L   IQR+GP +DRLPT+ TCF+ LLLP+Y S++ LR  L+LAI   +GFGLQ
Sbjct:  244 GILLGLAIYNNVILDVHFPMVTYKKLVGLKPEFNDLKAAMPELGRGLQQLLDYE-GDVEEVFARNFDVEYEYYGEMRTVELVEGGSSKPVTNENRQEYVELYTKWVLEDSINRHFQAFSEGFHEVCDGFALRMFRHEELELLIRGLPHLDFEALQKVTRYDGGYREDSPTVQMFWEVLHSLTLEQKKRFLLFTTGCDRAPVGGLGKLPLIIQRSGPDTDRLPTSHTCFHILLLPEYASKDKLRERLLLAIDNAEGFGLQ 501          
BLAST of mRNA_M-pyrifera_M_contig85255.19875.1 vs. uniprot
Match: A0A7S2R9E4_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2R9E4_9STRA)

HSP 1 Score: 262 bits (669), Expect = 8.050e-78
Identity = 131/262 (50.00%), Postives = 182/262 (69.47%), Query Frame = 1
Query:    1 GMVLGLAVHNGVLLDLHFPEAFWAKLLQFPLG-LSDLLSVDPELGRGLVRLLKYEEDD-IEDVFCLAFEGS-LNVGDKIVTEELMEGGSEVMVTQENKHRYVRMFAQWYLHDSVAPEFDAIHQGFKKVVDAPALRLLRPPELELLVVGHPHLNFKELEQVTVYDGGFHKEHPTIVRFWKVVHDLPYPLKKKLLLFTTGSSKAPLGGLKNLRFKIQRNGPHSDRLPTASTCFNTLLLPDYDSEEHLRNLLVLAIQECQGFGLQ 777
            GM++GLA++NGV+LD+HFP   + KLL      L D+  +DPEL RGL +LL++E    +ED FC +FE +  + G   VT EL  GGSE+++T EN+  YV ++ +W L  SV  +F A  QGF +V+ +  L LLRP +LE +V G PHL+FKEL +VTVY+GG+H  HP +  FW VV  +    ++KLL+F TGS KAP+GGLKNL FK+ R GP S++LPT+ TCFNT+L+P+Y S+  L  L+ LA+ EC+GFGL+
Sbjct:  669 GMLIGLALYNGVILDVHFPLVVYKKLLPDQRWTLRDVAFLDPELARGLRQLLEFEPAGLVEDTFCRSFEVTWTSFGADHVT-ELKPGGSEILITGENRKEYVELYVRWLLEQSVEQQFGAFKQGFDRVMGSATLGLLRPEDLEAIVSGTPHLDFKELRRVTVYEGGYHDHHPVMEWFWDVVESMDLDTQRKLLMFATGSVKAPIGGLKNLTFKVHRMGPDSEQLPTSHTCFNTMLIPEYSSQAKLNKLVRLAVSECEGFGLK 929          
BLAST of mRNA_M-pyrifera_M_contig85255.19875.1 vs. uniprot
Match: A0A8B7YBB0_ACAPL (ubiquitin-protein ligase E3A-like n=1 Tax=Acanthaster planci TaxID=133434 RepID=A0A8B7YBB0_ACAPL)

HSP 1 Score: 263 bits (672), Expect = 2.310e-77
Identity = 132/259 (50.97%), Postives = 174/259 (67.18%), Query Frame = 1
Query:    1 GMVLGLAVHNGVLLDLHFPEAFWAKLLQFPLGLSDLLSVDPELGRGLVRLLKY-EEDDIEDVFCLAFEGSLNVGDKIVTEELMEGGSEVMVTQENKHRYVRMFAQWYLHDSVAPEFDAIHQGFKKVVDAPALRLLRPPELELLVVGHPHLNFKELEQVTVYDGGFHKEHPTIVRFWKVVHDLPYPLKKKLLLFTTGSSKAPLGGLKNLRFKIQRNGPHSDRLPTASTCFNTLLLPDYDSEEHLRNLLVLAIQECQGFGL 774
            G +LGLA++NG++LD+HFP A + KL    + L DL+ + P +GRGL  LL Y EE+D+E+VFC  F+ S  +  ++VT +L+  GS++ VT EN+  YV+++ Q  L DSVAP+F+A  +GF  V    ALRL +  E E+LV G P L+F  LE    Y+ G+ ++HPTI  FW VVH L    K+KLL F TGS K PL GL +L   IQRNGP SDRLPTA TCFN LLLPDY S E LR  L++AI+  +GFGL
Sbjct:  877 GSLLGLAIYNGIILDVHFPTAIYKKLHSKVMDLQDLMEIQPSVGRGLQELLSYQEEEDVENVFCQTFQISYTLMGEVVTVDLLPEGSQIPVTNENRKEYVKLYVQHVLVDSVAPQFEAFARGFHTVCGGSALRLFQAAETEMLVCGSPELDFMALEASATYEDGYSRQHPTIKAFWTVVHSLSKEQKRKLLHFITGSDKVPLKGLSSLPIVIQRNGPDSDRLPTAMTCFNRLLLPDYSSGETLRQKLLVAIENSKGFGL 1135          
BLAST of mRNA_M-pyrifera_M_contig85255.19875.1 vs. uniprot
Match: A0A1E7FJD6_9STRA (HECT-domain-containing protein (Fragment) n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FJD6_9STRA)

HSP 1 Score: 242 bits (618), Expect = 4.110e-76
Identity = 122/260 (46.92%), Postives = 170/260 (65.38%), Query Frame = 1
Query:    1 GMVLGLAVHNGVLLDLHFPEAFWAKLLQFPLGLSDLLSVDPELGRGLVRLLKYEEDDIEDVFCLAFEGSLNVGDKIVTEELMEGGSEVMVTQENKHRYVRMFAQWYLHDSVAPEFDAIHQGFKKVVDAPALRLLRPPELELLVVGHPHLNFKELEQVTVYDGGFHKEHPTIVRFWKVVHDLPYPLKKKLLLFTTGSSKAPLGGLKNLRFKIQRNGPHSDRLPTASTCFNTLLLPDY-DSEEHLRNLLVLAIQECQGFGLQ 777
            G++ GLAV+N V+LD+HFP A + KLL+ PLGL DL  +D ++ +GL  LL+Y+ DD ED+FCL FE +  V  +   +EL  GGS++ VT ENK  YV ++ +W L DS+ P++D   +GF  V++  +L +L   ELELLV G P L+F  LE+ + Y+GG+  +   +   WK +       ++  L F TGSSKAP+GGL  + FKIQR GP S +LPTA TCFNTL++PDY D  + L   L  A+ EC+GFGLQ
Sbjct:   55 GVLCGLAVYNTVILDVHFPHAIYRKLLRLPLGLEDL--IDEDVRKGLKTLLEYDGDDAEDIFCLNFEITWMVLGQQQKKELKPGGSDIAVTSENKEEYVMLYVKWLLVDSIGPQYDEFERGFMTVMEDSSLEILLAEELELLVTGTPELDFYALEKSSTYEGGYDTDSTVVKNIWKWIQSASLTTQESFLKFCTGSSKAPIGGLGEMPFKIQRAGPDSIQLPTAHTCFNTLIVPDYGDDYKKLSERLSRAVIECEGFGLQ 312          
BLAST of mRNA_M-pyrifera_M_contig85255.19875.1 vs. uniprot
Match: A0A1Y2HY75_9FUNG (HECT domain-containing protein n=1 Tax=Catenaria anguillulae PL171 TaxID=765915 RepID=A0A1Y2HY75_9FUNG)

HSP 1 Score: 241 bits (615), Expect = 5.360e-76
Identity = 120/259 (46.33%), Postives = 168/259 (64.86%), Query Frame = 1
Query:    1 GMVLGLAVHNGVLLDLHFPEAFWAKLLQFPLGLSDLLSVDPELGRGLVRLLKYEEDDIEDVFCLAFEGSLNVGDKIVTEELMEGGSEVMVTQENKHRYVRMFAQWYLHDSVAPEFDAIHQGFKKVVDAPALRLLRPPELELLVVGHP-HLNFKELEQVTVYDGGFHKEHPTIVRFWKVVHDLPYPLKKKLLLFTTGSSKAPLGGLKNLRFKIQRNGPHSDRLPTASTCFNTLLLPDYDSEEHLRNLLVLAIQECQGFGL 774
            G+VLGLAV+NGV++D+ FP+ F+ +LL     L D+    P+LGRGL ++L ++E D+EDVFC +F+ S+    ++ T EL+ GGS++ VT  N+  YV ++ +W    SV  +F A+ +GF +V    A+ + RP ELELL+ G    ++   LEQ   YD G+H  HPTI  FW +VH L    KKKLL F T S + PL GL +L F IQRNGP S+RLPTA TCF  LLLP+Y  +E L+  L+ A++  +GFGL
Sbjct:   28 GIVLGLAVYNGVIVDVRFPKLFYKRLLGEQPTLDDVKDTWPDLGRGLQQMLDWDEGDVEDVFCRSFDVSVEAYGEVKTVELVPGGSDISVTNMNRREYVELYVEWICKKSVDRQFRALRRGFHQVCGGYAVSMCRPEELELLMCGQEIDMDLTPLEQACKYDDGYHAGHPTIRAFWSIVHALSMEQKKKLLEFVTASDRVPLKGLSSLTFVIQRNGPDSERLPTALTCFGRLLLPEYADKEKLKRFLLTAVENAKGFGL 286          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig85255.19875.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S0YG59_9CHLO2.690e-8149.23Hypothetical protein n=1 Tax=Polytomella parva Tax... [more]
A0A1S3H1T8_LINUN1.500e-8048.06ubiquitin-protein ligase E3A-like n=1 Tax=Lingula ... [more]
W7TN24_9STRA3.980e-8050.74Ubiquitin protein ligase e3a n=2 Tax=Monodopsidace... [more]
B7G8Z6_PHATC3.030e-7948.85Predicted protein (Fragment) n=2 Tax=Phaeodactylum... [more]
UPI000A2A88059.790e-7948.65ubiquitin-protein ligase E3A n=1 Tax=Exaiptasia di... [more]
A0A061R381_9CHLO2.670e-7849.03Ubiquitin-protein ligase E3 A (Fragment) n=1 Tax=T... [more]
A0A7S2R9E4_9STRA8.050e-7850.00Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A8B7YBB0_ACAPL2.310e-7750.97ubiquitin-protein ligase E3A-like n=1 Tax=Acanthas... [more]
A0A1E7FJD6_9STRA4.110e-7646.92HECT-domain-containing protein (Fragment) n=1 Tax=... [more]
A0A1Y2HY75_9FUNG5.360e-7646.33HECT domain-containing protein n=1 Tax=Catenaria a... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig85255contigM-pyrifera_M_contig85255:88..867 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score251.1
Seed ortholog evalue5.5e-64
Seed eggNOG ortholog2850.Phatr15627
KEGG koko:K10587,ko:K10615
KEGG Pathwayko04120,ko05165,ko05203,map04120,map05165,map05203
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Domain Homologous to E6-AP Carboxyl Terminus with
EggNOG OGs2XA58@2836,COG5021@1,KOG0941@2759
EC2.3.2.26
COG Functional cat.H
Best tax levelBacillariophyta
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko04121
Exons1
Model size780
Cds size777
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816761.2582004-CDS-M-pyrifera_M_contig85255:87..8641622816761.2582004-CDS-M-pyrifera_M_contig85255:87..864Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig85255 88..864 -
1692278162.8284771-CDS-M-pyrifera_M_contig85255:87..8641692278162.8284771-CDS-M-pyrifera_M_contig85255:87..864Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig85255 88..864 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816761.2726204-UTR-M-pyrifera_M_contig85255:864..8671622816761.2726204-UTR-M-pyrifera_M_contig85255:864..867Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig85255 865..867 -
1692278162.841397-UTR-M-pyrifera_M_contig85255:864..8671692278162.841397-UTR-M-pyrifera_M_contig85255:864..867Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig85255 865..867 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig85255.19875.1prot_M-pyrifera_M_contig85255.19875.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig85255 88..864 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig85255.19875.1

>prot_M-pyrifera_M_contig85255.19875.1 ID=prot_M-pyrifera_M_contig85255.19875.1|Name=mRNA_M-pyrifera_M_contig85255.19875.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=259bp
MVLGLAVHNGVLLDLHFPEAFWAKLLQFPLGLSDLLSVDPELGRGLVRLL
KYEEDDIEDVFCLAFEGSLNVGDKIVTEELMEGGSEVMVTQENKHRYVRM
FAQWYLHDSVAPEFDAIHQGFKKVVDAPALRLLRPPELELLVVGHPHLNF
KELEQVTVYDGGFHKEHPTIVRFWKVVHDLPYPLKKKLLLFTTGSSKAPL
GGLKNLRFKIQRNGPHSDRLPTASTCFNTLLLPDYDSEEHLRNLLVLAIQ
ECQGFGLQ*
back to top

mRNA from alignment at M-pyrifera_M_contig85255:88..867-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig85255.19875.1 ID=mRNA_M-pyrifera_M_contig85255.19875.1|Name=mRNA_M-pyrifera_M_contig85255.19875.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=780bp|location=Sequence derived from alignment at M-pyrifera_M_contig85255:88..867- (Macrocystis pyrifera P11B4 male)
GGGATGGTGTTGGGGTTGGCTGTACATAATGGGGTCTTGTTGGATTTGCA TTTTCCCGAGGCATTTTGGGCAAAACTGTTGCAGTTCCCACTTGGATTAT CTGATCTCTTGTCTGTAGATCCAGAACTTGGTCGAGGACTTGTTCGCTTG TTGAAGTATGAGGAAGATGACATTGAGGATGTGTTTTGTCTTGCTTTTGA AGGGTCCTTGAATGTGGGGGATAAAATTGTGACCGAAGAATTGATGGAGG GTGGGAGTGAGGTGATGGTGACCCAAGAAAATAAACATCGATATGTTCGG ATGTTTGCACAATGGTATTTGCATGACTCTGTGGCTCCAGAGTTTGATGC AATTCACCAAGGATTTAAGAAAGTGGTAGATGCACCTGCATTGCGACTCT TGCGCCCACCCGAGTTGGAATTGCTGGTTGTTGGACATCCACACCTGAAC TTCAAGGAATTGGAGCAAGTTACTGTGTATGATGGTGGGTTTCACAAGGA ACATCCAACTATTGTTCGCTTCTGGAAAGTAGTGCATGACCTTCCTTATC CTCTCAAGAAGAAATTACTCCTTTTCACGACGGGGTCGTCAAAAGCCCCG CTTGGAGGGTTGAAAAACTTGAGATTCAAGATTCAACGCAATGGACCACA TTCAGACAGACTCCCTACAGCATCTACATGCTTTAACACTCTCTTACTCC CTGACTATGACTCAGAAGAGCATCTCCGAAACCTTCTTGTCCTTGCTATC CAGGAATGCCAGGGTTTTGGGTTGCAATGA
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig85255:88..867-

>mRNA_M-pyrifera_M_contig85255.19875.1 ID=mRNA_M-pyrifera_M_contig85255.19875.1|Name=mRNA_M-pyrifera_M_contig85255.19875.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1554bp|location=Sequence derived from alignment at M-pyrifera_M_contig85255:88..867- (Macrocystis pyrifera P11B4 male)
ATGGTGTTGGGGTTGGCTGTACATAATGGGGTCTTGTTGGATTTGCATTT
TCCCGAGGCATTTTGGGCAAAACTGTTGCAGTTCCCACTTGGATTATCTG
ATCTCTTGTCTGTAGATCCAGAACTTGGTCGAGGACTTGTTCGCTTGTTG
AAGTATGAGGAAGATGACATTGAGGATGTGTTTTGTCTTGCTTTTGAAGG
GTCCTTGAATGTGGGGGATAAAATTGTGACCGAAGAATTGATGGAGGGTG
GGAGTGAGGTGATGGTGACCCAAGAAAATAAACATCGATATGTTCGGATG
TTTGCACAATGGTATTTGCATGACTCTGTGGCTCCAGAGTTTGATGCAAT
TCACCAAGGATTTAAGAAAGTGGTAGATGCACCTGCATTGCGACTCTTGC
GCCCACCCGAGTTGGAATTGCTGGTTGTTGGACATCCACACCTGAACTTC
AAGGAATTGGAGCAAGTTACTGTGTATGATGGTGGGTTTCACAAGGAACA
TCCAACTATTGTTCGCTTCTGGAAAGTAGTGCATGACCTTCCTTATCCTC
TCAAGAAGAAATTACTCCTTTTCACGACGGGGTCGTCAAAAGCCCCGCTT
GGAGGGTTGAAAAACTTGAGATTCAAGATTCAACGCAATGGACCACATTC
AGACAGACTCCCTACAGCATCTACATGCTTTAACACTCTCTTACTCCCTG
ACTATGACTCAGAAGAGCATCTCCGAAACCTTCTTGTCCTTGCTATCCAG
GAATGCCAGGGTTTTGGGTTGCAATGAATGGTGTTGGGGTTGGCTGTACA
TAATGGGGTCTTGTTGGATTTGCATTTTCCCGAGGCATTTTGGGCAAAAC
TGTTGCAGTTCCCACTTGGATTATCTGATCTCTTGTCTGTAGATCCAGAA
CTTGGTCGAGGACTTGTTCGCTTGTTGAAGTATGAGGAAGATGACATTGA
GGATGTGTTTTGTCTTGCTTTTGAAGGGTCCTTGAATGTGGGGGATAAAA
TTGTGACCGAAGAATTGATGGAGGGTGGGAGTGAGGTGATGGTGACCCAA
GAAAATAAACATCGATATGTTCGGATGTTTGCACAATGGTATTTGCATGA
CTCTGTGGCTCCAGAGTTTGATGCAATTCACCAAGGATTTAAGAAAGTGG
TAGATGCACCTGCATTGCGACTCTTGCGCCCACCCGAGTTGGAATTGCTG
GTTGTTGGACATCCACACCTGAACTTCAAGGAATTGGAGCAAGTTACTGT
GTATGATGGTGGGTTTCACAAGGAACATCCAACTATTGTTCGCTTCTGGA
AAGTAGTGCATGACCTTCCTTATCCTCTCAAGAAGAAATTACTCCTTTTC
ACGACGGGGTCGTCAAAAGCCCCGCTTGGAGGGTTGAAAAACTTGAGATT
CAAGATTCAACGCAATGGACCACATTCAGACAGACTCCCTACAGCATCTA
CATGCTTTAACACTCTCTTACTCCCTGACTATGACTCAGAAGAGCATCTC
CGAAACCTTCTTGTCCTTGCTATCCAGGAATGCCAGGGTTTTGGGTTGCA
ATGA
back to top