mRNA_M-pyrifera_M_contig85223.19862.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig85223.19862.1
Unique NamemRNA_M-pyrifera_M_contig85223.19862.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig85223.19862.1 vs. uniprot
Match: A0A6J5N8Z0_9CAUD (Intramolecular chaperone auto-processing domain containing protein n=1 Tax=uncultured Caudovirales phage TaxID=2100421 RepID=A0A6J5N8Z0_9CAUD)

HSP 1 Score: 51.6 bits (122), Expect = 9.950e-5
Identity = 30/56 (53.57%), Postives = 34/56 (60.71%), Query Frame = 1 
Query:  214 LGRTTFEAHDGTSYLVGASMEATFTDTTRGTGDGGSRLAFSTAADGANTPTERLSI 381
            LG  TF   DGT Y+  A+  A F D T GT D   RL FST ADGA +PTER+ I
Sbjct: 1017 LGALTFRGDDGTDYVSQAASIAAFVDGTPGTNDMPGRLVFSTTADGAASPTERMRI 1072
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig85223.19862.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6J5N8Z0_9CAUD9.950e-553.57Intramolecular chaperone auto-processing domain co... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig85223contigM-pyrifera_M_contig85223:174..620 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size447
Cds size447
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816760.7219126-CDS-M-pyrifera_M_contig85223:173..6201622816760.7219126-CDS-M-pyrifera_M_contig85223:173..620Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig85223 174..620 -
1692278162.4899833-CDS-M-pyrifera_M_contig85223:173..6201692278162.4899833-CDS-M-pyrifera_M_contig85223:173..620Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig85223 174..620 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig85223.19862.1prot_M-pyrifera_M_contig85223.19862.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig85223 174..620 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig85223.19862.1

>prot_M-pyrifera_M_contig85223.19862.1 ID=prot_M-pyrifera_M_contig85223.19862.1|Name=mRNA_M-pyrifera_M_contig85223.19862.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=149bp
TGAATAGSTLTVTGAATAGSTLSVTGLTSLGANVDVVGDETLTTDSATVG
DTSQVQFQRFNGGGALTASSVLGRTTFEAHDGTSYLVGASMEATFTDTTR
GTGDGGSRLAFSTAADGANTPTERLSIDMAGLVSVASTLQTGGAATVGG
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mRNA from alignment at M-pyrifera_M_contig85223:174..620-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig85223.19862.1 ID=mRNA_M-pyrifera_M_contig85223.19862.1|Name=mRNA_M-pyrifera_M_contig85223.19862.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=447bp|location=Sequence derived from alignment at M-pyrifera_M_contig85223:174..620- (Macrocystis pyrifera P11B4 male)
ACTGGCGCGGCGACTGCGGGCAGCACTTTGACTGTGACAGGCGCTGCGAC
TGCGGGCAGTACTCTGTCAGTGACTGGTCTGACATCGCTGGGGGCGAACG
TGGACGTGGTGGGTGACGAAACGCTGACGACTGACTCCGCTACGGTCGGG
GACACGTCTCAGGTTCAGTTCCAGCGGTTCAACGGGGGCGGGGCGCTGAC
TGCCAGCTCGGTGTTGGGCCGGACGACGTTCGAGGCACACGACGGCACCT
CGTACCTGGTGGGCGCTTCGATGGAGGCGACGTTCACGGACACGACGCGG
GGCACTGGGGACGGCGGGAGTCGGCTGGCGTTCAGCACGGCGGCGGATGG
GGCGAACACGCCGACTGAGCGTCTCAGTATCGACATGGCGGGTCTGGTGA
GCGTGGCGTCAACGCTGCAGACTGGCGGGGCTGCGACTGTGGGTGGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig85223:174..620-

>mRNA_M-pyrifera_M_contig85223.19862.1 ID=mRNA_M-pyrifera_M_contig85223.19862.1|Name=mRNA_M-pyrifera_M_contig85223.19862.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=894bp|location=Sequence derived from alignment at M-pyrifera_M_contig85223:174..620- (Macrocystis pyrifera P11B4 male)
ACTGGCGCGGCGACTGCGGGCAGCACTTTGACTGTGACAGGCGCTGCGAC
TGCGGGCAGTACTCTGTCAGTGACTGGTCTGACATCGCTGGGGGCGAACG
TGGACGTGGTGGGTGACGAAACGCTGACGACTGACTCCGCTACGGTCGGG
GACACGTCTCAGGTTCAGTTCCAGCGGTTCAACGGGGGCGGGGCGCTGAC
TGCCAGCTCGGTGTTGGGCCGGACGACGTTCGAGGCACACGACGGCACCT
CGTACCTGGTGGGCGCTTCGATGGAGGCGACGTTCACGGACACGACGCGG
GGCACTGGGGACGGCGGGAGTCGGCTGGCGTTCAGCACGGCGGCGGATGG
GGCGAACACGCCGACTGAGCGTCTCAGTATCGACATGGCGGGTCTGGTGA
GCGTGGCGTCAACGCTGCAGACTGGCGGGGCTGCGACTGTGGGTGGAACT
GGCGCGGCGACTGCGGGCAGCACTTTGACTGTGACAGGCGCTGCGACTGC
GGGCAGTACTCTGTCAGTGACTGGTCTGACATCGCTGGGGGCGAACGTGG
ACGTGGTGGGTGACGAAACGCTGACGACTGACTCCGCTACGGTCGGGGAC
ACGTCTCAGGTTCAGTTCCAGCGGTTCAACGGGGGCGGGGCGCTGACTGC
CAGCTCGGTGTTGGGCCGGACGACGTTCGAGGCACACGACGGCACCTCGT
ACCTGGTGGGCGCTTCGATGGAGGCGACGTTCACGGACACGACGCGGGGC
ACTGGGGACGGCGGGAGTCGGCTGGCGTTCAGCACGGCGGCGGATGGGGC
GAACACGCCGACTGAGCGTCTCAGTATCGACATGGCGGGTCTGGTGAGCG
TGGCGTCAACGCTGCAGACTGGCGGGGCTGCGACTGTGGGTGGA
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