prot_M-pyrifera_M_contig109485.1984.1 (polypeptide) Macrocystis pyrifera P11B4 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_M-pyrifera_M_contig109485.1984.1
Unique Nameprot_M-pyrifera_M_contig109485.1984.1
Typepolypeptide
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Sequence length104
Homology
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BLAST of mRNA_M-pyrifera_M_contig109485.1984.1 vs. uniprot
Match: D3BL64_POLPP (WD40 repeat-containing protein n=1 Tax=Polysphondylium pallidum (strain ATCC 26659 / Pp 5 / PN500) TaxID=670386 RepID=D3BL64_POLPP)

HSP 1 Score: 53.1 bits (126), Expect = 6.910e-6
Identity = 26/74 (35.14%), Postives = 39/74 (52.70%), Query Frame = 0 
Query:   16 MVVKKDYLYATSGDKIIR-CSIITGKRATALVGHTGDIVRLRVTKNCLFSGAVDGTLRQWDLSSGKCINVFVGH 88
            +V+  D L   S D+ IR  S+         +GHT  +  +    N LFS + DGT+RQWD ++G+C N+   H
Sbjct:  494 LVINNDLLVTWSDDRTIRVASVKDTDYKRVFLGHTEPVSSVCYFMNRLFSASSDGTIRQWDFTTGRCTNIIHSH 567
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BLAST of mRNA_M-pyrifera_M_contig109485.1984.1 vs. uniprot
Match: A0A8C3JAI6_9CHAR (Uncharacterized protein n=2 Tax=Calidris pygmaea TaxID=425635 RepID=A0A8C3JAI6_9CHAR)

HSP 1 Score: 51.2 bits (121), Expect = 1.160e-5
Identity = 22/50 (44.00%), Postives = 34/50 (68.00%), Query Frame = 0 
Query:   45 LVGHTGDIVRLRVTKNCLFSGAV-DGTLRQWDLSSGKCINVFVGHLLSVR 93
            LVGHTG +   ++  N + SG   D TLR WD+ +G+C++V +GH+ +VR
Sbjct:   11 LVGHTGGVWSSQMRDNIIISGGSRDATLRVWDIETGQCLHVLMGHVAAVR 60
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BLAST of mRNA_M-pyrifera_M_contig109485.1984.1 vs. uniprot
Match: A0A2T9Y202_9FUNG (F-box domain-containing protein n=1 Tax=Smittium simulii TaxID=133385 RepID=A0A2T9Y202_9FUNG)

HSP 1 Score: 52.0 bits (123), Expect = 1.750e-5
Identity = 28/83 (33.73%), Postives = 45/83 (54.22%), Query Frame = 0 
Query:   21 DYLYATSGDKIIRCSIITGKRATALVGHTGDIVR---LRVTK------------NCLFSGAVDGTLRQWDLSSGKCINVFVGH 88
            DYL++ S D  IR  +++ K+ T +      I+R   L ++             + LFSG++DGT+R WD+ SGKC++V   H
Sbjct:  468 DYLFSCSDDSTIRRWVLSEKKCTHIYNGHSHIIRGISLNISSFLSTDSKPSNNNHKLFSGSLDGTIRVWDIDSGKCLSVLCYH 550
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig109485.1984.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D3BL64_POLPP6.910e-635.14WD40 repeat-containing protein n=1 Tax=Polysphondy... [more]
A0A8C3JAI6_9CHAR1.160e-544.00Uncharacterized protein n=2 Tax=Calidris pygmaea T... [more]
A0A2T9Y202_9FUNG1.750e-533.73F-box domain-containing protein n=1 Tax=Smittium s... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0 of Macrocystis pyrifera male
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001680WD40 repeatSMARTSM00320WD40_4coord: 38..75
e-value: 0.0041
score: 26.4
IPR001680WD40 repeatPROSITEPS50082WD_REPEATS_2coord: 45..84
score: 11.21
IPR015943WD40/YVTN repeat-like-containing domain superfamilyGENE3D2.130.10.10coord: 3..103
e-value: 5.4E-14
score: 53.6
NoneNo IPR availablePANTHERPTHR19872UBIQUITIN LIGASE SPECIFICITY FACTOR/HREP PROTEINcoord: 22..99
NoneNo IPR availablePANTHERPTHR19872:SF8coord: 22..99
IPR017986WD40-repeat-containing domainPROSITEPS50294WD_REPEATS_REGIONcoord: 45..104
score: 11.287
IPR036322WD40-repeat-containing domain superfamilySUPERFAMILY50978WD40 repeat-likecoord: 21..99

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig109485contigM-pyrifera_M_contig109485:294..605 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Macrocystis pyrifera male2022-09-29
Diamond blastp: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-16
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig109485.1984.1mRNA_M-pyrifera_M_contig109485.1984.1Macrocystis pyrifera P11B4 malemRNAM-pyrifera_M_contig109485 294..605 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_M-pyrifera_M_contig109485.1984.1 ID=prot_M-pyrifera_M_contig109485.1984.1|Name=mRNA_M-pyrifera_M_contig109485.1984.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=104bp
SDRILKVRTKGNVQEMVVKKDYLYATSGDKIIRCSIITGKRATALVGHTG
DIVRLRVTKNCLFSGAVDGTLRQWDLSSGKCINVFVGHLLSVRDFHVYPT
PTVR
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001680WD40_repeat
IPR015943WD40/YVTN_repeat-like_dom_sf
IPR017986WD40_repeat_dom
IPR036322WD40_repeat_dom_sf