mRNA_M-pyrifera_M_contig85108.19839.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig85108.19839.1
Unique NamemRNA_M-pyrifera_M_contig85108.19839.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig85108.19839.1 vs. uniprot
Match: A0A7S3PPM4_9STRA (Hypothetical protein n=1 Tax=Aplanochytrium stocchinoi TaxID=215587 RepID=A0A7S3PPM4_9STRA)

HSP 1 Score: 81.6 bits (200), Expect = 1.650e-14
Identity = 62/216 (28.70%), Postives = 96/216 (44.44%), Query Frame = 1 
Query:    1 FVAKRMRGLQLFCARLVKIPFLRADGAVWTFL-TDDGERWEAARKL--TPKDFQDGGVYGNDPCAPSVEMAPLPLEGAVRWRAAVQAYPLPHNSDLILSEAQRQVAELDDALTALMHSGRRLVERSLALAEEARAFHGAFQALARVEEACASGT---WHPKSTPDLAMTESMGAKGVAAWSHTLRHQPRALEALCLEYIRYEQAQCRAVKQLMETR 630
            FV  RMRGL +F ARL++ P+L+ D A+  FL  +D ++WE  +K   TP   +                     EG  RW  A+  Y LP  +D ++++   Q+  L+  + AL+HS   LV  + A A     F   +Q + + E +    T   +  KS   L             WS     +PR +E L  E +RYE      +K+L++ R
Sbjct:  140 FVQSRMRGLNMFMARLLENPYLKTDSAILLFLKANDLDQWEQGKKEEETPNTSKRN-------------------EGQYRWMQALTNYTLPKQADRLVADISSQIESLECVMRALLHSCSSLVANAYAYAASLADFKMRYQEVVKAEASSTDTTQVEYANKSDSQLLKVLQTMGDTFTRWSDIQTGEPRIIERLLQEILRYEHGCILKLKELLKLR 336
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig85108.19839.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A7S3PPM4_9STRA1.650e-1428.70Hypothetical protein n=1 Tax=Aplanochytrium stocch... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig85108contigM-pyrifera_M_contig85108:4..639 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score74.3
Seed ortholog evalue7.3e-11
Seed eggNOG ortholog42099.EPrPV00000016874
KEGG koko:K17917,ko:K17921
KEGG Pathwayko04144,map04144
Hectar predicted targeting categoryother localisation
EggNOG free text desc.PhoX homologous domain, present in p47phox and p40phox.
EggNOG OGs1MK7I@121069,COG5391@1,KOG2273@2759
COG Functional cat.U
Best tax levelPythiales
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko04131
Exons1
Model size636
Cds size621
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816759.4326613-UTR-M-pyrifera_M_contig85108:3..181622816759.4326613-UTR-M-pyrifera_M_contig85108:3..18Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig85108 4..18 +
1692278161.6673448-UTR-M-pyrifera_M_contig85108:3..181692278161.6673448-UTR-M-pyrifera_M_contig85108:3..18Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig85108 4..18 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816759.4440253-CDS-M-pyrifera_M_contig85108:18..6391622816759.4440253-CDS-M-pyrifera_M_contig85108:18..639Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig85108 19..639 +
1692278161.6828163-CDS-M-pyrifera_M_contig85108:18..6391692278161.6828163-CDS-M-pyrifera_M_contig85108:18..639Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig85108 19..639 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig85108.19839.1prot_M-pyrifera_M_contig85108.19839.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig85108 19..639 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig85108.19839.1

>prot_M-pyrifera_M_contig85108.19839.1 ID=prot_M-pyrifera_M_contig85108.19839.1|Name=mRNA_M-pyrifera_M_contig85108.19839.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=207bp
MRGLQLFCARLVKIPFLRADGAVWTFLTDDGERWEAARKLTPKDFQDGGV
YGNDPCAPSVEMAPLPLEGAVRWRAAVQAYPLPHNSDLILSEAQRQVAEL
DDALTALMHSGRRLVERSLALAEEARAFHGAFQALARVEEACASGTWHPK
STPDLAMTESMGAKGVAAWSHTLRHQPRALEALCLEYIRYEQAQCRAVKQ
LMETREQ
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mRNA from alignment at M-pyrifera_M_contig85108:4..639+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig85108.19839.1 ID=mRNA_M-pyrifera_M_contig85108.19839.1|Name=mRNA_M-pyrifera_M_contig85108.19839.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=636bp|location=Sequence derived from alignment at M-pyrifera_M_contig85108:4..639+ (Macrocystis pyrifera P11B4 male)
TTTGTTGCGAAACGAATGCGTGGCCTTCAGCTGTTTTGTGCAAGGTTAGT
AAAGATTCCATTCCTTCGTGCTGATGGTGCAGTGTGGACTTTTTTGACAG
ATGATGGGGAACGATGGGAAGCAGCTCGAAAATTAACTCCAAAAGATTTT
CAAGATGGTGGAGTGTATGGCAATGATCCATGTGCTCCAAGTGTGGAAAT
GGCACCGCTTCCATTGGAAGGGGCAGTGCGTTGGCGTGCAGCTGTACAAG
CATATCCCTTGCCTCATAATTCTGACTTGATTCTGAGTGAAGCGCAACGT
CAAGTAGCTGAATTAGATGATGCGTTGACTGCACTCATGCATAGTGGCCG
CAGATTGGTTGAACGAAGCTTAGCCTTGGCGGAAGAAGCTCGTGCATTTC
ATGGTGCATTTCAGGCATTAGCACGAGTGGAAGAAGCTTGTGCAAGTGGA
ACATGGCATCCAAAATCAACCCCAGACTTGGCAATGACAGAATCAATGGG
TGCCAAAGGTGTTGCTGCTTGGTCTCACACTCTTCGTCATCAACCTCGTG
CACTTGAAGCTCTTTGTCTCGAATATATTCGATATGAGCAAGCTCAATGT
CGTGCTGTGAAGCAACTCATGGAAACGAGGGAGCAA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig85108:4..639+

>mRNA_M-pyrifera_M_contig85108.19839.1 ID=mRNA_M-pyrifera_M_contig85108.19839.1|Name=mRNA_M-pyrifera_M_contig85108.19839.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1242bp|location=Sequence derived from alignment at M-pyrifera_M_contig85108:4..639+ (Macrocystis pyrifera P11B4 male)
ATGCGTGGCCTTCAGCTGTTTTGTGCAAGGTTAGTAAAGATTCCATTCCT
TCGTGCTGATGGTGCAGTGTGGACTTTTTTGACAGATGATGGGGAACGAT
GGGAAGCAGCTCGAAAATTAACTCCAAAAGATTTTCAAGATGGTGGAGTG
TATGGCAATGATCCATGTGCTCCAAGTGTGGAAATGGCACCGCTTCCATT
GGAAGGGGCAGTGCGTTGGCGTGCAGCTGTACAAGCATATCCCTTGCCTC
ATAATTCTGACTTGATTCTGAGTGAAGCGCAACGTCAAGTAGCTGAATTA
GATGATGCGTTGACTGCACTCATGCATAGTGGCCGCAGATTGGTTGAACG
AAGCTTAGCCTTGGCGGAAGAAGCTCGTGCATTTCATGGTGCATTTCAGG
CATTAGCACGAGTGGAAGAAGCTTGTGCAAGTGGAACATGGCATCCAAAA
TCAACCCCAGACTTGGCAATGACAGAATCAATGGGTGCCAAAGGTGTTGC
TGCTTGGTCTCACACTCTTCGTCATCAACCTCGTGCACTTGAAGCTCTTT
GTCTCGAATATATTCGATATGAGCAAGCTCAATGTCGTGCTGTGAAGCAA
CTCATGGAAACGAGGGAGCAAATGCGTGGCCTTCAGCTGTTTTGTGCAAG
GTTAGTAAAGATTCCATTCCTTCGTGCTGATGGTGCAGTGTGGACTTTTT
TGACAGATGATGGGGAACGATGGGAAGCAGCTCGAAAATTAACTCCAAAA
GATTTTCAAGATGGTGGAGTGTATGGCAATGATCCATGTGCTCCAAGTGT
GGAAATGGCACCGCTTCCATTGGAAGGGGCAGTGCGTTGGCGTGCAGCTG
TACAAGCATATCCCTTGCCTCATAATTCTGACTTGATTCTGAGTGAAGCG
CAACGTCAAGTAGCTGAATTAGATGATGCGTTGACTGCACTCATGCATAG
TGGCCGCAGATTGGTTGAACGAAGCTTAGCCTTGGCGGAAGAAGCTCGTG
CATTTCATGGTGCATTTCAGGCATTAGCACGAGTGGAAGAAGCTTGTGCA
AGTGGAACATGGCATCCAAAATCAACCCCAGACTTGGCAATGACAGAATC
AATGGGTGCCAAAGGTGTTGCTGCTTGGTCTCACACTCTTCGTCATCAAC
CTCGTGCACTTGAAGCTCTTTGTCTCGAATATATTCGATATGAGCAAGCT
CAATGTCGTGCTGTGAAGCAACTCATGGAAACGAGGGAGCAA
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