mRNA_M-pyrifera_M_contig85105.19837.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig85105.19837.1
Unique NamemRNA_M-pyrifera_M_contig85105.19837.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig85105.19837.1 vs. uniprot
Match: UPI00106C3321 (importin subunit alpha-1-like n=1 Tax=Dendronephthya gigantea TaxID=151771 RepID=UPI00106C3321)

HSP 1 Score: 70.1 bits (170), Expect = 1.540e-12
Identity = 33/63 (52.38%), Postives = 43/63 (68.25%), Query Frame = 1 
Query:    1 LSSSNDIDVYCGVYALRKLLAREEKPPTEDVVQAGLAPRLVELLSHPQVEICFEASWAITNIA 189
            +S+S    V+  V A RK+L+RE  PP  DV+QAGL P+LVE L     +I FEA+WA+TNIA
Sbjct:   78 VSNSTQDQVFAAVQASRKMLSRERNPPINDVIQAGLVPKLVECLKQSVSDIQFEAAWALTNIA 140
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BLAST of mRNA_M-pyrifera_M_contig85105.19837.1 vs. uniprot
Match: UPI001F04780E (importin subunit alpha-1-like n=1 Tax=Xenia sp. Carnegie-2017 TaxID=2897299 RepID=UPI001F04780E)

HSP 1 Score: 70.1 bits (170), Expect = 1.540e-12
Identity = 31/62 (50.00%), Postives = 41/62 (66.13%), Query Frame = 1 
Query:    4 SSSNDIDVYCGVYALRKLLAREEKPPTEDVVQAGLAPRLVELLSHPQVEICFEASWAITNIA 189
            + S     +  V A RK+L+RE  PP  DV+QAGL P+L+E L  P  +I FEA+WA+TNIA
Sbjct:   81 TDSTQEQTFTAVQATRKMLSRERNPPINDVIQAGLVPKLIECLKRPNSDIQFEAAWALTNIA 142
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BLAST of mRNA_M-pyrifera_M_contig85105.19837.1 vs. uniprot
Match: A0A6S7IYY3_PARCT (Importin subunit alpha n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A6S7IYY3_PARCT)

HSP 1 Score: 67.0 bits (162), Expect = 1.870e-11
Identity = 31/62 (50.00%), Postives = 42/62 (67.74%), Query Frame = 1 
Query:    4 SSSNDIDVYCGVYALRKLLAREEKPPTEDVVQAGLAPRLVELLSHPQVEICFEASWAITNIA 189
            + S    ++  V A RK+L+RE+ PP  DV+QAGL P+LVE L     +I FEA+WA+TNIA
Sbjct:   80 ADSTQDQIFAAVQASRKMLSREKNPPINDVIQAGLVPKLVECLKTNVSDIQFEAAWALTNIA 141
[Close]
BLAST of mRNA_M-pyrifera_M_contig85105.19837.1 vs. uniprot
Match: A0A7J6RPB3_PEROL (IBB domain-containing protein (Fragment) n=1 Tax=Perkinsus olseni TaxID=32597 RepID=A0A7J6RPB3_PEROL)

HSP 1 Score: 65.9 bits (159), Expect = 3.510e-11
Identity = 31/64 (48.44%), Postives = 47/64 (73.44%), Query Frame = 1 
Query:    1 LSSSNDIDVYCGVYALRKLLAREEKPPTEDVVQAGLAPRLVELLSHPQV-EICFEASWAITNIA 189
            LSSS++  V   + + RKLL++E++PP ++V+ AG+ PR  ELL HP   ++ FEA+WA+TNIA
Sbjct:   92 LSSSDEATVMEALVSFRKLLSKEDRPPIQNVIDAGVLPRFKELLDHPMSPKMQFEAAWALTNIA 155
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BLAST of mRNA_M-pyrifera_M_contig85105.19837.1 vs. uniprot
Match: A0A7J6M6A0_PEROL (Importin subunit alpha n=4 Tax=Perkinsus olseni TaxID=32597 RepID=A0A7J6M6A0_PEROL)

HSP 1 Score: 65.5 bits (158), Expect = 6.520e-11
Identity = 31/64 (48.44%), Postives = 47/64 (73.44%), Query Frame = 1 
Query:    1 LSSSNDIDVYCGVYALRKLLAREEKPPTEDVVQAGLAPRLVELLSHPQV-EICFEASWAITNIA 189
            LSSS++  V   + + RKLL++E++PP ++V+ AG+ PR  ELL HP   ++ FEA+WA+TNIA
Sbjct:   92 LSSSDEAAVMEALVSFRKLLSKEDRPPIQNVIDAGVLPRFKELLDHPMSSKMQFEAAWALTNIA 155
[Close]
BLAST of mRNA_M-pyrifera_M_contig85105.19837.1 vs. uniprot
Match: A0A7J6SVM8_PEROL (IBB domain-containing protein n=1 Tax=Perkinsus olseni TaxID=32597 RepID=A0A7J6SVM8_PEROL)

HSP 1 Score: 65.5 bits (158), Expect = 6.570e-11
Identity = 31/64 (48.44%), Postives = 47/64 (73.44%), Query Frame = 1 
Query:    1 LSSSNDIDVYCGVYALRKLLAREEKPPTEDVVQAGLAPRLVELLSHPQV-EICFEASWAITNIA 189
            LSSS++  V   + + RKLL++E++PP ++V+ AG+ PR  ELL HP   ++ FEA+WA+TNIA
Sbjct:  295 LSSSDEAAVMEALVSFRKLLSKEDRPPIQNVIDAGVLPRFKELLDHPMSSKMQFEAAWALTNIA 358
[Close]
BLAST of mRNA_M-pyrifera_M_contig85105.19837.1 vs. uniprot
Match: A0A7M5X1X0_9CNID (Importin subunit alpha n=1 Tax=Clytia hemisphaerica TaxID=252671 RepID=A0A7M5X1X0_9CNID)

HSP 1 Score: 64.7 bits (156), Expect = 1.220e-10
Identity = 31/59 (52.54%), Postives = 44/59 (74.58%), Query Frame = 1 
Query:   16 DIDVYCGVYALRKLLAREEKPPTEDVVQAGLAPRLVELLSHPQ-VEICFEASWAITNIA 189
            D  +Y  V + R+LL+RE+ PP ++V++AGL P+LV+LL + Q   I FEASWA+TNIA
Sbjct:   82 DDKIYQAVQSARRLLSREKNPPIDNVIKAGLVPKLVQLLQYDQNTLIQFEASWAVTNIA 140
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BLAST of mRNA_M-pyrifera_M_contig85105.19837.1 vs. uniprot
Match: A0A8B8ASF1_CRAVI (Importin subunit alpha n=3 Tax=Crassostrea TaxID=6564 RepID=A0A8B8ASF1_CRAVI)

HSP 1 Score: 63.5 bits (153), Expect = 3.110e-10
Identity = 31/63 (49.21%), Postives = 44/63 (69.84%), Query Frame = 1 
Query:    4 SSSNDIDVYCGVYALRKLLAREEKPPTEDVVQAGLAPRLVELLSH-PQVEICFEASWAITNIA 189
            S+S    + C   A RKLL++E  PP +D++QAG+ PR+VE L H  + E+ FEA+WA+TNIA
Sbjct:   80 STSPQTQMQC-TQAARKLLSKERNPPIDDIIQAGVIPRMVEFLGHNDKPELQFEAAWALTNIA 141
[Close]
BLAST of mRNA_M-pyrifera_M_contig85105.19837.1 vs. uniprot
Match: A0A1E3PSH6_9ASCO (Importin subunit alpha n=1 Tax=Nadsonia fulvescens var. elongata DSM 6958 TaxID=857566 RepID=A0A1E3PSH6_9ASCO)

HSP 1 Score: 63.5 bits (153), Expect = 3.110e-10
Identity = 26/47 (55.32%), Postives = 37/47 (78.72%), Query Frame = 1 
Query:   49 RKLLAREEKPPTEDVVQAGLAPRLVELLSHPQVEICFEASWAITNIA 189
            RKLL++E+KPP + V+Q G+ PR V++LS P   + FEA+WA+TNIA
Sbjct:  109 RKLLSKEKKPPIDQVIQCGVVPRFVQILSSPHPRVQFEAAWALTNIA 155
[Close]
BLAST of mRNA_M-pyrifera_M_contig85105.19837.1 vs. uniprot
Match: A0A8H7ZVW1_9FUNG (Armadillo-type protein n=1 Tax=Olpidium bornovanus TaxID=278681 RepID=A0A8H7ZVW1_9FUNG)

HSP 1 Score: 62.4 bits (150), Expect = 3.660e-10
Identity = 32/59 (54.24%), Postives = 40/59 (67.80%), Query Frame = 1 
Query:   22 DVYCGVYA---LRKLLAREEKPPTEDVVQAGLAPRLVELLSHPQVEICFEASWAITNIA 189
            DV C + A    RK L++E  PP ++V+ AG+ PRLVELL  P   I FEA+WAITNIA
Sbjct:   87 DVGCQLAAAKKFRKFLSKERNPPIQEVLAAGVLPRLVELLRSPHALIQFEAAWAITNIA 145
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig85105.19837.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
UPI00106C33211.540e-1252.38importin subunit alpha-1-like n=1 Tax=Dendronephth... [more]
UPI001F04780E1.540e-1250.00importin subunit alpha-1-like n=1 Tax=Xenia sp. Ca... [more]
A0A6S7IYY3_PARCT1.870e-1150.00Importin subunit alpha n=1 Tax=Paramuricea clavata... [more]
A0A7J6RPB3_PEROL3.510e-1148.44IBB domain-containing protein (Fragment) n=1 Tax=P... [more]
A0A7J6M6A0_PEROL6.520e-1148.44Importin subunit alpha n=4 Tax=Perkinsus olseni Ta... [more]
A0A7J6SVM8_PEROL6.570e-1148.44IBB domain-containing protein n=1 Tax=Perkinsus ol... [more]
A0A7M5X1X0_9CNID1.220e-1052.54Importin subunit alpha n=1 Tax=Clytia hemisphaeric... [more]
A0A8B8ASF1_CRAVI3.110e-1049.21Importin subunit alpha n=3 Tax=Crassostrea TaxID=6... [more]
A0A1E3PSH6_9ASCO3.110e-1055.32Importin subunit alpha n=1 Tax=Nadsonia fulvescens... [more]
A0A8H7ZVW1_9FUNG3.660e-1054.24Armadillo-type protein n=1 Tax=Olpidium bornovanus... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig85105contigM-pyrifera_M_contig85105:3..191 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeMetazoa
Seed ortholog score66.2
Seed ortholog evalue6.1e-09
Seed eggNOG ortholog6412.HelroP112993
Preferred nameKPNA2
KEGG koko:K15043
KEGG Pathwayko05164,map05164
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000018,GO:0000278,GO:0002376,GO:0002520,GO:0003006,GO:0003674,GO:0005048,GO:0005215,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005635,GO:0005643,GO:0005654,GO:0005737,GO:0005829,GO:0006139,GO:0006259,GO:0006606,GO:0006607,GO:0006725,GO:0006807,GO:0006810,GO:0006886,GO:0006913,GO:0006996,GO:0006997,GO:0006998,GO:0007049,GO:0007084,GO:0007275,GO:0007276,GO:0007281,GO:0007283,GO:0007286,GO:0007291,GO:0007292,GO:0007293,GO:0007300,GO:0007301,GO:0007349,GO:0008104,GO:0008134,GO:0008139,GO:0008150,GO:0008152,GO:0008565,GO:0009605,GO:0009628,GO:0009629,GO:0009653,GO:0009790,GO:0009792,GO:0009987,GO:0010256,GO:0010494,GO:0012505,GO:0015031,GO:0015833,GO:0016032,GO:0016043,GO:0017038,GO:0019048,GO:0019054,GO:0019219,GO:0019222,GO:0019899,GO:0019953,GO:0022402,GO:0022412,GO:0022414,GO:0030154,GO:0030725,GO:0031323,GO:0031468,GO:0031967,GO:0031974,GO:0031975,GO:0031981,GO:0032501,GO:0032502,GO:0032504,GO:0032991,GO:0033036,GO:0033218,GO:0033365,GO:0034504,GO:0034613,GO:0034641,GO:0035770,GO:0035821,GO:0036464,GO:0040011,GO:0042277,GO:0042330,GO:0042332,GO:0042826,GO:0042886,GO:0043062,GO:0043063,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044003,GO:0044068,GO:0044237,GO:0044238,GO:0044260,GO:0044403,GO:0044419,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0044703,GO:0045184,GO:0046483,GO:0046907,GO:0048232,GO:0048468,GO:0048477,GO:0048513,GO:0048515,GO:0048534,GO:0048542,GO:0048609,GO:0048646,GO:0048731,GO:0048732,GO:0048856,GO:0048869,GO:0050789,GO:0050794,GO:0050896,GO:0051052,GO:0051169,GO:0051170,GO:0051171,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0051701,GO:0051704,GO:0051817,GO:0051983,GO:0060255,GO:0061024,GO:0065007,GO:0070013,GO:0070491,GO:0070727,GO:0071702,GO:0071704,GO:0071705,GO:0071840,GO:0072594,GO:0080090,GO:0090304,GO:1901360,GO:1903047,GO:1990904
EggNOG free text desc.importin subunit
EggNOG OGs38CKN@33154,3BG2W@33208,3CYCW@33213,COG5064@1,KOG0166@2759
COG Functional cat.U
Best tax levelBilateria
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03036
Exons1
Model size189
Cds size189
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816759.3678405-CDS-M-pyrifera_M_contig85105:2..1911622816759.3678405-CDS-M-pyrifera_M_contig85105:2..191Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig85105 3..191 -
1692278161.6362984-CDS-M-pyrifera_M_contig85105:2..1911692278161.6362984-CDS-M-pyrifera_M_contig85105:2..191Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig85105 3..191 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig85105.19837.1prot_M-pyrifera_M_contig85105.19837.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig85105 3..191 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig85105.19837.1

>prot_M-pyrifera_M_contig85105.19837.1 ID=prot_M-pyrifera_M_contig85105.19837.1|Name=mRNA_M-pyrifera_M_contig85105.19837.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=63bp
LSSSNDIDVYCGVYALRKLLAREEKPPTEDVVQAGLAPRLVELLSHPQVE
ICFEASWAITNIA
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mRNA from alignment at M-pyrifera_M_contig85105:3..191-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig85105.19837.1 ID=mRNA_M-pyrifera_M_contig85105.19837.1|Name=mRNA_M-pyrifera_M_contig85105.19837.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=189bp|location=Sequence derived from alignment at M-pyrifera_M_contig85105:3..191- (Macrocystis pyrifera P11B4 male)
TTATCTAGCTCCAACGATATTGACGTCTATTGTGGTGTGTATGCGTTGAG
GAAGTTGTTAGCTCGTGAGGAGAAGCCACCGACGGAGGATGTGGTGCAAG
CTGGTTTGGCGCCTCGTTTGGTGGAGTTGCTGTCCCATCCACAAGTTGAA
ATTTGTTTTGAGGCATCTTGGGCTATCACAAACATTGCA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig85105:3..191-

>mRNA_M-pyrifera_M_contig85105.19837.1 ID=mRNA_M-pyrifera_M_contig85105.19837.1|Name=mRNA_M-pyrifera_M_contig85105.19837.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=378bp|location=Sequence derived from alignment at M-pyrifera_M_contig85105:3..191- (Macrocystis pyrifera P11B4 male)
TTATCTAGCTCCAACGATATTGACGTCTATTGTGGTGTGTATGCGTTGAG
GAAGTTGTTAGCTCGTGAGGAGAAGCCACCGACGGAGGATGTGGTGCAAG
CTGGTTTGGCGCCTCGTTTGGTGGAGTTGCTGTCCCATCCACAAGTTGAA
ATTTGTTTTGAGGCATCTTGGGCTATCACAAACATTGCATTATCTAGCTC
CAACGATATTGACGTCTATTGTGGTGTGTATGCGTTGAGGAAGTTGTTAG
CTCGTGAGGAGAAGCCACCGACGGAGGATGTGGTGCAAGCTGGTTTGGCG
CCTCGTTTGGTGGAGTTGCTGTCCCATCCACAAGTTGAAATTTGTTTTGA
GGCATCTTGGGCTATCACAAACATTGCA
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