mRNA_M-pyrifera_M_contig85097.19833.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig85097.19833.1
Unique NamemRNA_M-pyrifera_M_contig85097.19833.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig85097.19833.1 vs. uniprot
Match: A0A7V8V1G7_9BACT (Uncharacterized protein n=1 Tax=Bremerella alba TaxID=980252 RepID=A0A7V8V1G7_9BACT)

HSP 1 Score: 120 bits (300), Expect = 7.140e-31
Identity = 68/69 (98.55%), Postives = 69/69 (100.00%), Query Frame = 1
Query:    1 MTSNISLSKLRQGFTLVELLVVIAIIGILVXXVLPAVATARASARRMECQSNLKQIGIGMVNFAGIDKG 207
            MTSNISL+KLRQGFTLVELLVVIAIIGILVXXVLPAVATARASARRMECQSNLKQIGIGMVNFAGIDKG
Sbjct:    1 MTSNISLTKLRQGFTLVELLVVIAIIGILVXXVLPAVATARASARRMECQSNLKQIGIGMVNFAGIDKG 69          
BLAST of mRNA_M-pyrifera_M_contig85097.19833.1 vs. uniprot
Match: UPI001CCC6F05 (DUF1559 domain-containing protein n=1 Tax=Bremerella volcania TaxID=2527984 RepID=UPI001CCC6F05)

HSP 1 Score: 112 bits (281), Expect = 4.070e-28
Identity = 65/69 (94.20%), Postives = 65/69 (94.20%), Query Frame = 1
Query:    1 MTSNISLSKLRQGFTLVELLVVIAIIGILVXXVLPAVATARASARRMECQSNLKQIGIGMVNFAGIDKG 207
            MT  IS SK RQGFTLVELLVVIAIIGILVXXVLPAVATARASARRMECQSNLKQIGIGMVNFAGIDKG
Sbjct:    1 MTHTISFSKPRQGFTLVELLVVIAIIGILVXXVLPAVATARASARRMECQSNLKQIGIGMVNFAGIDKG 69          
BLAST of mRNA_M-pyrifera_M_contig85097.19833.1 vs. uniprot
Match: A0A2S8FY63_9BACT (Uncharacterized protein n=1 Tax=Blastopirellula marina TaxID=124 RepID=A0A2S8FY63_9BACT)

HSP 1 Score: 83.2 bits (204), Expect = 3.780e-17
Identity = 51/69 (73.91%), Postives = 53/69 (76.81%), Query Frame = 1
Query:    1 MTSNISLSKLRQGFTLVELLVVIAIIGILVXXVLPAVATARASARRMECQSNLKQIGIGMVNFAGIDKG 207
            MT+N  L+K R  FTLVELLVVIAIIGI  XX        RASARRMECQSNLKQIGIGMVNFA IDKG
Sbjct:    1 MTTNQLLAKPRLAFTLVELLVVIAIIGIXXXXXXXXXXXXRASARRMECQSNLKQIGIGMVNFASIDKG 69          
BLAST of mRNA_M-pyrifera_M_contig85097.19833.1 vs. uniprot
Match: UPI0011614327 (DUF1559 domain-containing protein n=1 Tax=Singulisphaera sp. GP187 TaxID=1882752 RepID=UPI0011614327)

HSP 1 Score: 78.2 bits (191), Expect = 1.010e-15
Identity = 38/56 (67.86%), Postives = 51/56 (91.07%), Query Frame = 1
Query:   22 SKLRQGFTLVELLVVIAIIGILVXXVLPAVATARASARRMECQSNLKQIGIGMVNF 189
            S+LR GFTL+ELLVVIAIIG+LV  +LPAV++ARA+ARR +CQSNL+Q+G+G++ F
Sbjct:    3 SRLRAGFTLIELLVVIAIIGVLVGLMLPAVSSARAAARRAKCQSNLRQVGLGLLGF 58          
BLAST of mRNA_M-pyrifera_M_contig85097.19833.1 vs. uniprot
Match: A0A3L7PSU1_9BACT (Type II secretion system protein n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A3L7PSU1_9BACT)

HSP 1 Score: 73.6 bits (179), Expect = 1.330e-15
Identity = 36/59 (61.02%), Postives = 50/59 (84.75%), Query Frame = 1
Query:   31 RQGFTLVELLVVIAIIGILVXXVLPAVATARASARRMECQSNLKQIGIGMVNFAGIDKG 207
            + GFTLVELLVVIAIIG L+  ++PAV +ARA+ARR++C SN++Q+GIG++NFA   +G
Sbjct:    5 QSGFTLVELLVVIAIIGTLIGLLIPAVQSARAAARRVQCASNMRQVGIGILNFADTHQG 63          
BLAST of mRNA_M-pyrifera_M_contig85097.19833.1 vs. uniprot
Match: L0DPH0_SINAD (Prepilin-type N-terminal cleavage/methylation domain-containing protein n=2 Tax=Singulisphaera acidiphila TaxID=466153 RepID=L0DPH0_SINAD)

HSP 1 Score: 77.8 bits (190), Expect = 3.470e-15
Identity = 38/56 (67.86%), Postives = 51/56 (91.07%), Query Frame = 1
Query:   22 SKLRQGFTLVELLVVIAIIGILVXXVLPAVATARASARRMECQSNLKQIGIGMVNF 189
            S+LR GFTL+ELLVVIAIIG+LV  +LPAV++ARA+ARR +CQSNL+Q+G+G++ F
Sbjct:   19 SRLRVGFTLIELLVVIAIIGVLVGLMLPAVSSARAAARRAKCQSNLRQVGLGLLGF 74          
BLAST of mRNA_M-pyrifera_M_contig85097.19833.1 vs. uniprot
Match: A0A2S8FX74_9BACT (Prepilin-type cleavage/methylation domain-containing protein n=2 Tax=Pirellulaceae TaxID=2691357 RepID=A0A2S8FX74_9BACT)

HSP 1 Score: 76.6 bits (187), Expect = 5.230e-15
Identity = 40/55 (72.73%), Postives = 47/55 (85.45%), Query Frame = 1
Query:   25 KLRQGFTLVELLVVIAIIGILVXXVLPAVATARASARRMECQSNLKQIGIGMVNF 189
             LR+GFTLVELLVVIAIIGIL+  +LPAV  AR +ARRM+CQ+NLKQIG+G  NF
Sbjct:    2 SLRKGFTLVELLVVIAIIGILIAMLLPAVQQAREAARRMQCQNNLKQIGLGFHNF 56          
BLAST of mRNA_M-pyrifera_M_contig85097.19833.1 vs. uniprot
Match: A0A518C2B8_9BACT (Uncharacterized protein n=2 Tax=Bremerella volcania TaxID=2527984 RepID=A0A518C2B8_9BACT)

HSP 1 Score: 77.0 bits (188), Expect = 6.740e-15
Identity = 48/69 (69.57%), Postives = 49/69 (71.01%), Query Frame = 1
Query:    1 MTSNISLSKLRQGFTLVELLVVIAIIGILVXXVLPAVATARASARRMECQSNLKQIGIGMVNFAGIDKG 207
            MTSN  L+K R  FTLVELLVVIAIIG   XX            RRMECQSNLKQIGIGMVNFAGIDKG
Sbjct:   39 MTSNHLLAKPRPAFTLVELLVVIAIIGXXXXXXXXXXXXXXXXXRRMECQSNLKQIGIGMVNFAGIDKG 107          
BLAST of mRNA_M-pyrifera_M_contig85097.19833.1 vs. uniprot
Match: A0A2S8G0C1_9BACT (Prepilin-type cleavage/methylation domain-containing protein n=2 Tax=Pirellulaceae TaxID=2691357 RepID=A0A2S8G0C1_9BACT)

HSP 1 Score: 76.3 bits (186), Expect = 7.380e-15
Identity = 39/55 (70.91%), Postives = 47/55 (85.45%), Query Frame = 1
Query:   31 RQGFTLVELLVVIAIIGILVXXVLPAVATARASARRMECQSNLKQIGIGMVNFAG 195
            R+GFTLVELLVVIAIIG+L+  +LPAV  AR SARRM+CQ+NLKQIG+ M N+ G
Sbjct:    4 RRGFTLVELLVVIAIIGVLISLLLPAVQQARESARRMQCQNNLKQIGLAMQNYHG 58          
BLAST of mRNA_M-pyrifera_M_contig85097.19833.1 vs. uniprot
Match: A0A2G2JBJ9_9BACT (Uncharacterized protein n=1 Tax=Blastopirellula sp. TaxID=2024826 RepID=A0A2G2JBJ9_9BACT)

HSP 1 Score: 76.3 bits (186), Expect = 9.280e-15
Identity = 40/58 (68.97%), Postives = 46/58 (79.31%), Query Frame = 1
Query:   31 RQGFTLVELLVVIAIIGILVXXVLPAVATARASARRMECQSNLKQIGIGMVNFAGIDK 204
            R GFTLVELLVVIAIIGILV   LPAV  AR SARR +CQ+NLK +G+G++NF G  K
Sbjct:   16 RSGFTLVELLVVIAIIGILVGLTLPAVQMARESARRAQCQNNLKNLGLGLLNFEGTHK 73          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig85097.19833.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7V8V1G7_9BACT7.140e-3198.55Uncharacterized protein n=1 Tax=Bremerella alba Ta... [more]
UPI001CCC6F054.070e-2894.20DUF1559 domain-containing protein n=1 Tax=Bremerel... [more]
A0A2S8FY63_9BACT3.780e-1773.91Uncharacterized protein n=1 Tax=Blastopirellula ma... [more]
UPI00116143271.010e-1567.86DUF1559 domain-containing protein n=1 Tax=Singulis... [more]
A0A3L7PSU1_9BACT1.330e-1561.02Type II secretion system protein n=1 Tax=Planctomy... [more]
L0DPH0_SINAD3.470e-1567.86Prepilin-type N-terminal cleavage/methylation doma... [more]
A0A2S8FX74_9BACT5.230e-1572.73Prepilin-type cleavage/methylation domain-containi... [more]
A0A518C2B8_9BACT6.740e-1569.57Uncharacterized protein n=2 Tax=Bremerella volcani... [more]
A0A2S8G0C1_9BACT7.380e-1570.91Prepilin-type cleavage/methylation domain-containi... [more]
A0A2G2JBJ9_9BACT9.280e-1568.97Uncharacterized protein n=1 Tax=Blastopirellula sp... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig85097contigM-pyrifera_M_contig85097:662..868 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score78.2
Seed ortholog evalue1.7e-12
Seed eggNOG ortholog886293.Sinac_6664
KEGG koko:K02456
KEGG TC3.A.15
KEGG Pathwayko03070,ko05111,map03070,map05111
KEGG ModuleM00331
Hectar predicted targeting categorysignal anchor
EggNOG free text desc.TIGRFAM prepilin-type N-terminal cleavage methylation domain
EggNOG OGs2J30M@203682,COG2165@1,COG2165@2
COG Functional cat.NU
Best tax levelPlanctomycetes
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko02044
Exons1
Model size207
Cds size207
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816759.162308-CDS-M-pyrifera_M_contig85097:661..8681622816759.162308-CDS-M-pyrifera_M_contig85097:661..868Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig85097 662..868 +
1692278161.5198302-CDS-M-pyrifera_M_contig85097:661..8681692278161.5198302-CDS-M-pyrifera_M_contig85097:661..868Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig85097 662..868 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig85097.19833.1prot_M-pyrifera_M_contig85097.19833.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig85097 662..868 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig85097.19833.1

>prot_M-pyrifera_M_contig85097.19833.1 ID=prot_M-pyrifera_M_contig85097.19833.1|Name=mRNA_M-pyrifera_M_contig85097.19833.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=69bp
MTSNISLSKLRQGFTLVELLVVIAIIGILVGLVLPAVATARASARRMECQ
SNLKQIGIGMVNFAGIDKG
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mRNA from alignment at M-pyrifera_M_contig85097:662..868+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig85097.19833.1 ID=mRNA_M-pyrifera_M_contig85097.19833.1|Name=mRNA_M-pyrifera_M_contig85097.19833.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=207bp|location=Sequence derived from alignment at M-pyrifera_M_contig85097:662..868+ (Macrocystis pyrifera P11B4 male)
ATGACATCGAACATTTCGCTCTCTAAGCTTCGTCAAGGGTTCACGCTGGT CGAACTTCTCGTGGTTATCGCCATCATTGGTATCCTGGTCGGACTTGTCT TGCCAGCGGTGGCTACGGCGCGTGCTTCTGCCCGCCGCATGGAATGCCAG TCGAACCTCAAGCAAATCGGCATCGGCATGGTTAACTTTGCCGGGATCGA TAAGGGG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig85097:662..868+

>mRNA_M-pyrifera_M_contig85097.19833.1 ID=mRNA_M-pyrifera_M_contig85097.19833.1|Name=mRNA_M-pyrifera_M_contig85097.19833.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=414bp|location=Sequence derived from alignment at M-pyrifera_M_contig85097:662..868+ (Macrocystis pyrifera P11B4 male)
ATGACATCGAACATTTCGCTCTCTAAGCTTCGTCAAGGGTTCACGCTGGT
CGAACTTCTCGTGGTTATCGCCATCATTGGTATCCTGGTCGGACTTGTCT
TGCCAGCGGTGGCTACGGCGCGTGCTTCTGCCCGCCGCATGGAATGCCAG
TCGAACCTCAAGCAAATCGGCATCGGCATGGTTAACTTTGCCGGGATCGA
TAAGGGGATGACATCGAACATTTCGCTCTCTAAGCTTCGTCAAGGGTTCA
CGCTGGTCGAACTTCTCGTGGTTATCGCCATCATTGGTATCCTGGTCGGA
CTTGTCTTGCCAGCGGTGGCTACGGCGCGTGCTTCTGCCCGCCGCATGGA
ATGCCAGTCGAACCTCAAGCAAATCGGCATCGGCATGGTTAACTTTGCCG
GGATCGATAAGGGG
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