mRNA_M-pyrifera_M_contig109483.1983.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig109483.1983.1
Unique NamemRNA_M-pyrifera_M_contig109483.1983.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig109483.1983.1 vs. uniprot
Match: UPI00195F3E91 (ankyrin repeat domain-containing protein n=1 Tax=Parashewanella hymeniacidonis TaxID=2807618 RepID=UPI00195F3E91)

HSP 1 Score: 51.6 bits (122), Expect = 8.540e-7
Identity = 26/55 (47.27%), Postives = 35/55 (63.64%), Query Frame = 1
Query:   10 LHEAAHTGQLYITKWLLRRGADVNKESKNGATALSIAVRSKNVALVDLLLDFGAD 174
            LHEAAH G  Y  K LLR G  ++++  +G TAL I+ R    A+V+LLL+  AD
Sbjct:   23 LHEAAHNGDTYSIKQLLRAGHSIDRQDDDGDTALIISARRGFTAIVELLLERSAD 77          
BLAST of mRNA_M-pyrifera_M_contig109483.1983.1 vs. uniprot
Match: A0A1E1M5U6_RHYSE (DUF676 domain-containing protein n=1 Tax=Rhynchosporium secalis TaxID=38038 RepID=A0A1E1M5U6_RHYSE)

HSP 1 Score: 52.8 bits (125), Expect = 1.630e-6
Identity = 28/57 (49.12%), Postives = 37/57 (64.91%), Query Frame = 1
Query:    4 TALHEAAHTGQLYITKWLLRRGADVNKESKNGATALSIAVRSKNVALVDLLLDFGAD 174
            T LH AA  G L I K LL  GADVN++++    AL+ A+   + A+V+LLLD GAD
Sbjct: 1316 TPLHLAADRGYLGIVKQLLSHGADVNRQTRYSTPALAAAITGGHKAMVELLLDSGAD 1372          
BLAST of mRNA_M-pyrifera_M_contig109483.1983.1 vs. uniprot
Match: A0A7S3PGU4_9STRA (Hypothetical protein n=1 Tax=Aplanochytrium stocchinoi TaxID=215587 RepID=A0A7S3PGU4_9STRA)

HSP 1 Score: 52.4 bits (124), Expect = 2.190e-6
Identity = 28/56 (50.00%), Postives = 36/56 (64.29%), Query Frame = 1
Query:    4 TALHEAAHTGQLYITKWLLRRGADVNKESKNGATALSIAVRSKNVALVDLLLDFGA 171
            TALH +A TG      +LL+ GAD N E  N +T L  AV S N+A+V LL++FGA
Sbjct:   96 TALHVSAATGHYDCAFFLLKLGADPNAEDGNNSTPLHYAVASGNIAVVQLLVEFGA 151          
BLAST of mRNA_M-pyrifera_M_contig109483.1983.1 vs. uniprot
Match: A0A8G0LCI0_9HYPO (ANK_REP_REGION domain-containing protein n=1 Tax=Trichoderma simmonsii TaxID=1491479 RepID=A0A8G0LCI0_9HYPO)

HSP 1 Score: 52.4 bits (124), Expect = 2.230e-6
Identity = 28/58 (48.28%), Postives = 42/58 (72.41%), Query Frame = 1
Query:    1 ETALHEAAHTGQLYITKWLLRRGADVNKESKNGATALSIAVRSKNVALVDLLLDFGAD 174
            +T L  A H G++ I + LLR GAD+NK+S +G+TAL  AV++  + +V+LLL+ GAD
Sbjct:  938 QTYLEHAGH-GRVDIARLLLRYGADLNKKSVSGSTALMEAVKNDQLTIVELLLENGAD 994          
BLAST of mRNA_M-pyrifera_M_contig109483.1983.1 vs. uniprot
Match: A0A6J3LUV8_9PEZI (ankyrin n=1 Tax=Dissoconium aciculare CBS 342.82 TaxID=1314786 RepID=A0A6J3LUV8_9PEZI)

HSP 1 Score: 52.0 bits (123), Expect = 2.500e-6
Identity = 26/57 (45.61%), Postives = 39/57 (68.42%), Query Frame = 1
Query:    4 TALHEAAHTGQLYITKWLLRRGADVNKESKNGATALSIAVRSKNVALVDLLLDFGAD 174
            +ALH AAH G  Y  + L+  GA++  E+K G T L  A+R+K + LV+LLL++GA+
Sbjct:   48 SALHVAAHLGLRYEAECLMINGANIEAENKLGHTPLVQAIRAKQLTLVNLLLEYGAN 104          
BLAST of mRNA_M-pyrifera_M_contig109483.1983.1 vs. uniprot
Match: A0A1Y1V1V5_9FUNG (Uncharacterized protein n=1 Tax=Piromyces finnis TaxID=1754191 RepID=A0A1Y1V1V5_9FUNG)

HSP 1 Score: 52.0 bits (123), Expect = 3.020e-6
Identity = 25/48 (52.08%), Postives = 32/48 (66.67%), Query Frame = 1
Query:   19 AAHTGQLYITKWLLRRGADVNKESKNGATALSIAVRSKNVALVDLLLD 162
            A+  G +   K LL +GAD+NK+ KNG TAL IA+ S  V  +DLLLD
Sbjct:    3 ASQFGNIQAIKCLLDKGADINKQDKNGLTALMIAITSNRVEAIDLLLD 50          
BLAST of mRNA_M-pyrifera_M_contig109483.1983.1 vs. uniprot
Match: A0A1E1L1X6_9HELO (Uncharacterized protein n=1 Tax=Rhynchosporium agropyri TaxID=914238 RepID=A0A1E1L1X6_9HELO)

HSP 1 Score: 51.6 bits (122), Expect = 4.160e-6
Identity = 26/57 (45.61%), Postives = 37/57 (64.91%), Query Frame = 1
Query:    4 TALHEAAHTGQLYITKWLLRRGADVNKESKNGATALSIAVRSKNVALVDLLLDFGAD 174
            T LH AA  G + I K LL  GAD+N++++    AL+ A+   + A+V+LLLD GAD
Sbjct:  960 TPLHLAADRGYMGIVKQLLSHGADINRQTRYSTPALAAAITGGHKAMVELLLDSGAD 1016          
BLAST of mRNA_M-pyrifera_M_contig109483.1983.1 vs. uniprot
Match: A0A3L8Q0S7_9GAMM (Ankyrin repeat domain-containing protein n=1 Tax=Parashewanella curva TaxID=2338552 RepID=A0A3L8Q0S7_9GAMM)

HSP 1 Score: 51.2 bits (121), Expect = 5.600e-6
Identity = 27/57 (47.37%), Postives = 37/57 (64.91%), Query Frame = 1
Query:    4 TALHEAAHTGQLYITKWLLRRGADVNKESKNGATALSIAVRSKNVALVDLLLDFGAD 174
            TALH A + GQ +  + LL RGA+ N    +G T L  AV  +N+A+V LL+DFGA+
Sbjct:  260 TALHYAVNIGQYHRARSLLERGANPNCVDCDGETPLFDAVHDENIAMVKLLIDFGAN 316          
BLAST of mRNA_M-pyrifera_M_contig109483.1983.1 vs. uniprot
Match: UPI0019125B93 (ankyrin repeat domain-containing protein n=1 Tax=Thiorhodovibrio winogradskyi TaxID=77007 RepID=UPI0019125B93)

HSP 1 Score: 49.7 bits (117), Expect = 1.460e-5
Identity = 25/56 (44.64%), Postives = 37/56 (66.07%), Query Frame = 1
Query:   10 LHEAAHTGQLYITKWLLRRGADVNKESKNGATALSIA-VRSKNVALVDLLLDFGAD 174
            LH+A   GQL +TKWLL+ GADVN+ + +G TAL +A     +  ++ LL  +GA+
Sbjct:  165 LHQAVMNGQLKMTKWLLQEGADVNRVTDSGETALDLARAADADPNVIRLLEQYGAE 220          
BLAST of mRNA_M-pyrifera_M_contig109483.1983.1 vs. uniprot
Match: UPI0013221868 (uncharacterized protein n=1 Tax=Colletotrichum fructicola TaxID=690256 RepID=UPI0013221868)

HSP 1 Score: 49.7 bits (117), Expect = 1.970e-5
Identity = 28/54 (51.85%), Postives = 39/54 (72.22%), Query Frame = 1
Query:    4 TALHEAAHTGQLYITKWLLRRGADVN-KESKNGATALSIAVRSKNVALVDLLLD 162
            T L +AA  GQL I + LL + A+VN + SK+GATALS+AVR   V +V+++LD
Sbjct:  315 TLLRKAADDGQLEIMRVLLAKKANVNLRSSKDGATALSVAVRQCRVDIVEIILD 368          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig109483.1983.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 15
Match NameE-valueIdentityDescription
UPI00195F3E918.540e-747.27ankyrin repeat domain-containing protein n=1 Tax=P... [more]
A0A1E1M5U6_RHYSE1.630e-649.12DUF676 domain-containing protein n=1 Tax=Rhynchosp... [more]
A0A7S3PGU4_9STRA2.190e-650.00Hypothetical protein n=1 Tax=Aplanochytrium stocch... [more]
A0A8G0LCI0_9HYPO2.230e-648.28ANK_REP_REGION domain-containing protein n=1 Tax=T... [more]
A0A6J3LUV8_9PEZI2.500e-645.61ankyrin n=1 Tax=Dissoconium aciculare CBS 342.82 T... [more]
A0A1Y1V1V5_9FUNG3.020e-652.08Uncharacterized protein n=1 Tax=Piromyces finnis T... [more]
A0A1E1L1X6_9HELO4.160e-645.61Uncharacterized protein n=1 Tax=Rhynchosporium agr... [more]
A0A3L8Q0S7_9GAMM5.600e-647.37Ankyrin repeat domain-containing protein n=1 Tax=P... [more]
UPI0019125B931.460e-544.64ankyrin repeat domain-containing protein n=1 Tax=T... [more]
UPI00132218681.970e-551.85uncharacterized protein n=1 Tax=Colletotrichum fru... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig109483contigM-pyrifera_M_contig109483:255..428 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size174
Cds size174
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815605.1261683-CDS-M-pyrifera_M_contig109483:254..4281622815605.1261683-CDS-M-pyrifera_M_contig109483:254..428Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig109483 255..428 +
1692277483.9521272-CDS-M-pyrifera_M_contig109483:254..4281692277483.9521272-CDS-M-pyrifera_M_contig109483:254..428Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig109483 255..428 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig109483.1983.1prot_M-pyrifera_M_contig109483.1983.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig109483 255..428 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig109483.1983.1

>prot_M-pyrifera_M_contig109483.1983.1 ID=prot_M-pyrifera_M_contig109483.1983.1|Name=mRNA_M-pyrifera_M_contig109483.1983.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=58bp
ETALHEAAHTGQLYITKWLLRRGADVNKESKNGATALSIAVRSKNVALVD
LLLDFGAD
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mRNA from alignment at M-pyrifera_M_contig109483:255..428+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig109483.1983.1 ID=mRNA_M-pyrifera_M_contig109483.1983.1|Name=mRNA_M-pyrifera_M_contig109483.1983.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=174bp|location=Sequence derived from alignment at M-pyrifera_M_contig109483:255..428+ (Macrocystis pyrifera P11B4 male)
GAGACTGCACTGCATGAAGCCGCACATACAGGCCAGCTGTACATTACCAA GTGGCTGCTGCGAAGAGGAGCGGACGTGAACAAGGAGAGCAAGAACGGCG CCACGGCCCTCAGTATTGCAGTGCGCAGCAAGAACGTCGCACTTGTGGAC CTGCTGCTGGACTTCGGAGCAGAC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig109483:255..428+

>mRNA_M-pyrifera_M_contig109483.1983.1 ID=mRNA_M-pyrifera_M_contig109483.1983.1|Name=mRNA_M-pyrifera_M_contig109483.1983.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=348bp|location=Sequence derived from alignment at M-pyrifera_M_contig109483:255..428+ (Macrocystis pyrifera P11B4 male)
GAGACTGCACTGCATGAAGCCGCACATACAGGCCAGCTGTACATTACCAA
GTGGCTGCTGCGAAGAGGAGCGGACGTGAACAAGGAGAGCAAGAACGGCG
CCACGGCCCTCAGTATTGCAGTGCGCAGCAAGAACGTCGCACTTGTGGAC
CTGCTGCTGGACTTCGGAGCAGACGAGACTGCACTGCATGAAGCCGCACA
TACAGGCCAGCTGTACATTACCAAGTGGCTGCTGCGAAGAGGAGCGGACG
TGAACAAGGAGAGCAAGAACGGCGCCACGGCCCTCAGTATTGCAGTGCGC
AGCAAGAACGTCGCACTTGTGGACCTGCTGCTGGACTTCGGAGCAGAC
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