mRNA_M-pyrifera_M_contig8507.19825.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig8507.19825.1
Unique NamemRNA_M-pyrifera_M_contig8507.19825.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
[Close]
BLAST of mRNA_M-pyrifera_M_contig8507.19825.1 vs. uniprot
Match: D7FZ90_ECTSI (Chain A, 4ank: A Designed Ankyrin Repeat Protein With Four Identical Consensus Repeats n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZ90_ECTSI)

HSP 1 Score: 120 bits (300), Expect = 5.720e-28
Identity = 74/184 (40.22%), Postives = 96/184 (52.17%), Query Frame = 1 
Query:    1 MGNPHDLASKGDVEGIRKFLQKSASKVDKKNRDGQTALHCAAKGGHVEVCRELIASVGSVDAQDAQLRTPLRLAVENNKPQAARVLCDAGALTSIP-NSADGXXXXXXXXXXXXXXXXXXXXXXXAVIDGNPDKWGHLPDEDCAVSEIRMMIKTERKDRAAAKP-------RNYHPQAATAPQP 528
            M N HDLASKGD+EG+RKFL +SA+K++  ++ GQT LH AAKGGHVEVCR                               A+VLC+AGA TS    ++DG                       A ID + ++WG+LP+EDC VSEIR +I   R++R AA P         Y+P AA+AP P
Sbjct:    1 MVNLHDLASKGDLEGVRKFLARSAAKINNTDKAGQTPLHIAAKGGHVEVCRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVAQVLCEAGASTSAGLQTSDGRSPLHIAANKGFVECAEVLLQHGAPIDTSRNRWGNLPEEDCVVSEIRTLIAAARQERDAAGPVAGVAGSSPYNPYAASAPPP 184
[Close]
BLAST of mRNA_M-pyrifera_M_contig8507.19825.1 vs. uniprot
Match: UPI0008F9DA70 (ankyrin repeat domain-containing protein 39 n=1 Tax=Bemisia tabaci TaxID=7038 RepID=UPI0008F9DA70)

HSP 1 Score: 57.4 bits (137), Expect = 5.770e-7
Identity = 38/92 (41.30%), Postives = 50/92 (54.35%), Query Frame = 1 
Query:   31 GDVEGIRKFLQKSASKVDKKNRDGQTALHCAAKGGHVEVCRELIASVGSVDAQDAQLR-TPLRLAVENNKPQAARVLCDAGALTSIPNSADG 303
            GD+  +RK LQK  S +D  +  G TALH AA+ GH+ VC  LI +  ++D+Q    R TPL  AV   K     +L   GA   I + ADG
Sbjct:   64 GDINRVRKLLQKGIS-IDGLDSGGYTALHYAARAGHLSVCELLIDAGAAIDSQTRAGRATPLHRAVSAGKEDVVMLLLKHGANPGIKD-ADG 153
[Close]
BLAST of mRNA_M-pyrifera_M_contig8507.19825.1 vs. uniprot
Match: A0A165ZRG9_9AGAM (Ankyrin n=1 Tax=Peniophora sp. CONT TaxID=1314672 RepID=A0A165ZRG9_9AGAM)

HSP 1 Score: 55.1 bits (131), Expect = 8.670e-7
Identity = 33/74 (44.59%), Postives = 41/74 (55.41%), Query Frame = 1 
Query:   88 KNRDGQTALHCAAKGGHVEVCRELIASVGSVDAQDAQLRTPLRLA------------VENNKPQAARVLCDAGA 273
            +N+DGQTALH AA+ GH E+CR L+  V  VDA D    TPL+ A            V+   P  ARVL + GA
Sbjct:    9 RNKDGQTALHYAARQGHSEICRVLLDHVALVDATDNDSYTPLQRAEKEGHWDEEQGHVKGCHPDVARVLLEYGA 82
[Close]
BLAST of mRNA_M-pyrifera_M_contig8507.19825.1 vs. uniprot
Match: A0A0L0HN81_SPIPD (Uncharacterized protein n=1 Tax=Spizellomyces punctatus (strain DAOM BR117) TaxID=645134 RepID=A0A0L0HN81_SPIPD)

HSP 1 Score: 56.6 bits (135), Expect = 1.140e-6
Identity = 34/95 (35.79%), Postives = 54/95 (56.84%), Query Frame = 1 
Query:   13 HDLASKGDVEGIRKFLQKSASKVDKKNRDGQTALHCAAKGGHVEVCRELIASVGSVDAQDAQL-RTPLRLAVENNKPQAARVLCDAGALTSIPNS 294
            H  A +GDV  +RK+L K     D+++R G TALH AA+ GHV+VCR ++ S G  +A+  ++  TPL  A+ +       +L    AL  + ++
Sbjct:   32 HGCAQRGDVAKVRKWLLKCCP--DERDRAGYTALHYAARQGHVDVCRVILESGGDPNAKTHEIGATPLHKAILSRNFPTVDLLLSYDALADMADN 124
[Close]
BLAST of mRNA_M-pyrifera_M_contig8507.19825.1 vs. uniprot
Match: A0A2E7D8H9_9PLAN (Uncharacterized protein n=1 Tax=Planctomycetaceae bacterium TaxID=2026779 RepID=A0A2E7D8H9_9PLAN)

HSP 1 Score: 55.8 bits (133), Expect = 1.510e-6
Identity = 34/88 (38.64%), Postives = 48/88 (54.55%), Query Frame = 1 
Query:   13 HDLASKGDVEGIRKFLQKSASKVDKKNRDGQTALHCAAKGGHVEVCRELIASVGSVDAQDAQLRTPLRLAVENNKPQAARVLCDAGAL 276
            H  AS GD+  +R+ + + A KVD+++    T L  AAK GH  V   LI S  +  A +    TPL +A EN K +AA VL + G +
Sbjct:    2 HFAASTGDLAKVRRLIAQDA-KVDQRDAQEMTPLMLAAKAGHARVMLLLIMSGATESATNQAGHTPLIMAAENGKTEAAEVLIELGRM 88
[Close]
BLAST of mRNA_M-pyrifera_M_contig8507.19825.1 vs. uniprot
Match: A0A6L7XPF2_9GAMM (Ankyrin repeat domain-containing protein n=2 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A6L7XPF2_9GAMM)

HSP 1 Score: 57.0 bits (136), Expect = 2.960e-6
Identity = 31/75 (41.33%), Postives = 43/75 (57.33%), Query Frame = 1 
Query:   31 GDVEGIRKFLQKSASKVDKKNRDGQTALHCAAKGGHVEVCRELIASVGSVDAQDAQLRTPLRLAVENNKPQAARV 255
            G VE +R  +++ A  V+  N  GQTALHCAAK G V++   L+A   +VDA DA   TPL   + +     AR+
Sbjct:  258 GSVERVRDLIERGAD-VNVTNHKGQTALHCAAKAGFVDIVELLLAHGAAVDAADATGETPLATVLRSTAKDKARL 331
[Close]
BLAST of mRNA_M-pyrifera_M_contig8507.19825.1 vs. uniprot
Match: UPI00067B2A36 (tyrosine-protein kinase shark n=1 Tax=Amyelois transitella TaxID=680683 RepID=UPI00067B2A36)

HSP 1 Score: 55.5 bits (132), Expect = 1.240e-5
Identity = 30/86 (34.88%), Postives = 44/86 (51.16%), Query Frame = 1 
Query:   13 HDLASKGDVEGIRKFLQKSASKVDKKNRDGQTALHCAAKGGHVEVCRELIASVGSVDAQDAQLRTPLRLAVENNKPQAARVLCDAG 270
            H     GD   + + L       D KN+DGQTA+H AA+ G  ++  +LI S  +V+ +D+   TPL    +NN P  A +L   G
Sbjct:  139 HRATEAGDYTVVSQLLACGYHSRDAKNKDGQTAVHIAARAGRDKILAKLIESGATVNVRDSFGYTPLHYTCQNNLPSTAELLITKG 224
[Close]
BLAST of mRNA_M-pyrifera_M_contig8507.19825.1 vs. uniprot
Match: A0A8C2JUA0_CYPCA (Euchromatic histone-lysine N-methyltransferase 1a n=4 Tax=Cyprinus carpio TaxID=7962 RepID=A0A8C2JUA0_CYPCA)

HSP 1 Score: 55.5 bits (132), Expect = 1.260e-5
Identity = 30/82 (36.59%), Postives = 48/82 (58.54%), Query Frame = 1 
Query:   22 ASKGDVEGIRKFLQKSASKVDKKNRDGQTALHCAAKGGHVEVCRELIASVGSVDAQDAQLRTPLRLAVENNKPQAARVLCDA 267
            A +G+++ I   L +   K+ K+    +T+LHCAA+ GH E+C  L+ +  ++D  DA+ RTPL  A ENN  +  + L  A
Sbjct:  339 AKRGELQRILHMLGRIFLKIYKR----KTSLHCAAEEGHKEICHVLVQAGANLDMCDAEQRTPLMYACENNHLETVKYLLKA 416
[Close]
BLAST of mRNA_M-pyrifera_M_contig8507.19825.1 vs. uniprot
Match: A0A8B7ZVW9_ACAPL (serine/threonine-protein phosphatase 6 regulatory ankyrin repeat subunit B-like n=1 Tax=Acanthaster planci TaxID=133434 RepID=A0A8B7ZVW9_ACAPL)

HSP 1 Score: 53.9 bits (128), Expect = 4.450e-5
Identity = 26/95 (27.37%), Postives = 51/95 (53.68%), Query Frame = 1 
Query:   16 DLASKGDVEGIRKFLQKSASKVDKKNRDGQTALHCAAKGGHVEVCRELIASVGSVDAQDAQLRTPLRLAVENNKPQAARVLCDAGALTSIPNSAD 300
            + ++ G+ E +++ + +    V  +N+ GQT LH AA GGH++   +L+ +   ++ QD    T L  A+  ++P   + L +AG+    P+  D
Sbjct:   28 NASAMGNTEKVKEIISRHPDLVKFQNKQGQTPLHAAAFGGHMDTVIDLVTNKAPLEQQDRDGCTALVSAIYGDEPDVVKYLLNAGSNAICPSKTD 122
[Close]
BLAST of mRNA_M-pyrifera_M_contig8507.19825.1 vs. uniprot
Match: A0A1G6W2L5_9BACT (Ankyrin repeat-containing protein n=1 Tax=Algoriphagus faecimaris TaxID=686796 RepID=A0A1G6W2L5_9BACT)

HSP 1 Score: 52.0 bits (123), Expect = 7.280e-5
Identity = 32/86 (37.21%), Postives = 50/86 (58.14%), Query Frame = 1 
Query:   13 HDLASKGDVEGIRKFLQKSASKVDKKNRDGQTALHCAAKGGHVEVCRELIASVGS--VDAQDAQLRTPLRLAVENNKPQAARVLCD 264
            H+LAS GDV+GI+K L K+   +D  + DG T L  AA  GHVE+ R L+    +  V + ++   TPL  A  ++  + A++L +
Sbjct:   63 HELASIGDVDGIKKILSKNPQLIDSFSADGFTPLGLAAYFGHVELVRLLLIQNANPNVPSNNSFRVTPLHSACASSNLEIAKLLIE 148
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig8507.19825.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 11
Match NameE-valueIdentityDescription
D7FZ90_ECTSI5.720e-2840.22Chain A, 4ank: A Designed Ankyrin Repeat Protein W... [more]
UPI0008F9DA705.770e-741.30ankyrin repeat domain-containing protein 39 n=1 Ta... [more]
A0A165ZRG9_9AGAM8.670e-744.59Ankyrin n=1 Tax=Peniophora sp. CONT TaxID=1314672 ... [more]
A0A0L0HN81_SPIPD1.140e-635.79Uncharacterized protein n=1 Tax=Spizellomyces punc... [more]
A0A2E7D8H9_9PLAN1.510e-638.64Uncharacterized protein n=1 Tax=Planctomycetaceae ... [more]
A0A6L7XPF2_9GAMM2.960e-641.33Ankyrin repeat domain-containing protein n=2 Tax=G... [more]
UPI00067B2A361.240e-534.88tyrosine-protein kinase shark n=1 Tax=Amyelois tra... [more]
A0A8C2JUA0_CYPCA1.260e-536.59Euchromatic histone-lysine N-methyltransferase 1a ... [more]
A0A8B7ZVW9_ACAPL4.450e-527.37serine/threonine-protein phosphatase 6 regulatory ... [more]
A0A1G6W2L5_9BACT7.280e-537.21Ankyrin repeat-containing protein n=1 Tax=Algoriph... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig8507contigM-pyrifera_M_contig8507:8862..10545 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score121.7
Seed ortholog evalue3.7e-25
Seed eggNOG ortholog2880.D7FZ90
KEGG koko:K15261
Hectar predicted targeting categoryother localisation
EggNOG free text desc.response to abiotic stimulus
EggNOG OGsCOG0666@1,KOG4177@2759
EC2.4.2.30
COG Functional cat.G
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000
Exons3
Model size573
Cds size573
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig8507.19825.1prot_M-pyrifera_M_contig8507.19825.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig8507 8862..10545 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816758.798548-CDS-M-pyrifera_M_contig8507:8861..90361622816758.798548-CDS-M-pyrifera_M_contig8507:8861..9036Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig8507 8862..9036 -
1692278161.3128364-CDS-M-pyrifera_M_contig8507:8861..90361692278161.3128364-CDS-M-pyrifera_M_contig8507:8861..9036Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig8507 8862..9036 -
1622816758.8099816-CDS-M-pyrifera_M_contig8507:9699..99661622816758.8099816-CDS-M-pyrifera_M_contig8507:9699..9966Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig8507 9700..9966 -
1692278161.3266997-CDS-M-pyrifera_M_contig8507:9699..99661692278161.3266997-CDS-M-pyrifera_M_contig8507:9699..9966Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig8507 9700..9966 -
1622816758.8240762-CDS-M-pyrifera_M_contig8507:10414..105451622816758.8240762-CDS-M-pyrifera_M_contig8507:10414..10545Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig8507 10415..10545 -
1692278161.3402104-CDS-M-pyrifera_M_contig8507:10414..105451692278161.3402104-CDS-M-pyrifera_M_contig8507:10414..10545Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig8507 10415..10545 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig8507.19825.1

>prot_M-pyrifera_M_contig8507.19825.1 ID=prot_M-pyrifera_M_contig8507.19825.1|Name=mRNA_M-pyrifera_M_contig8507.19825.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=191bp
MGNPHDLASKGDVEGIRKFLQKSASKVDKKNRDGQTALHCAAKGGHVEVC
RELIASVGSVDAQDAQLRTPLRLAVENNKPQAARVLCDAGALTSIPNSAD
GRTPLHLAARDGFTECAEILLEYGAVIDGNPDKWGHLPDEDCAVSEIRMM
IKTERKDRAAAKPRNYHPQAATAPQPGACAGGGSADFPPSC
back to top

mRNA from alignment at M-pyrifera_M_contig8507:8862..10545-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig8507.19825.1 ID=mRNA_M-pyrifera_M_contig8507.19825.1|Name=mRNA_M-pyrifera_M_contig8507.19825.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=1684bp|location=Sequence derived from alignment at M-pyrifera_M_contig8507:8862..10545- (Macrocystis pyrifera P11B4 male)
ATGGGTAACCCGCACGACCTCGCCAGCAAGGGAGACGTCGAGGGAATCCG
TAAATTCTTACAGAAATCGGCTTCGAAGGTGGACAAGAAGAACCGGGACG
GACAGACTGCTCTCCACTGCGCTGCGAAAGGGTACGGCAAAATAAATGCC
GGCACGGGAAATAGGGTTTTATACTTTAGGCCCCTCTTTTTTATACCGTG
CGTAGGTACACATCGTTGTGTGTAATTGCCCAGCACAGTCTGGAAGCACG
AGGATTAGGGCTACTGTACCTACCTGGTAGTCTATCAGAGAGCGTTTTCT
ATCCGCCGTGTGCTTTGCACAGGGACGGAACCTATTTCTGGGTGCGGTAT
TCCTTACTATCATACAACTTTTTAACACCCTTGGACCCATATTTTACCAC
AAACCTTTCGCGTTATTTTACTCGTGAGTGCCTCGTAAACTCTGGGGAGC
ATACTGAAGTATCACCCTACGGTACAACAGTAGCCTTCCGGGCACTTGAC
TCGATATCGTGAGTCTAAGCCTTTTCGCTACGAGTTGTGACCTCAACGAT
CATGAAAAACTATATACATGTGACCTCAGGGGGCACGTCGAGGTTTGCAG
GGAGCTTATCGCTTCTGTGGGGAGCGTGGACGCCCAGGATGCGCAGCTCC
GCACGCCTCTGCGGCTCGCCGTTGAGAACAACAAGCCGCAAGCCGCGAGG
GTGCTGTGCGACGCAGGGGCCTTGACGAGTATCCCTAACTCAGCAGATGG
ACGAACACCTCTGCACCTAGCGGCAAGGGATGGATTCACAGAGTGCGCCG
AAATTCTTCTCGAGTATGGGGCTGTGATCGACGGGAACCCTGACAAGTGA
GCGAGCCCTTTTTGGACGACATGAGACAGGTAGACACAGCCGTTAGTGTA
CTTGTACTGTTGTCATGTATGTACGGCGTGTCAATATCACATCATACACA
CAGTAAGTCGTTGTACGAGTAGGTACGCGGAAATTTAAGGAGCGTTTAAA
CATTAACATGAAGACCAAGCGGTCCTTCTAGTTCCGCTCGGAGTGGCATC
ATGTCTTCAGAGGGAAACACGCGCTTGGATGAAGTGTACGTATAGCAAGT
GGACACTAATAGGTGCACTTTACTTCGAGTCAACAAACGGCGTGCTCGGT
GTTCTTCGTCCGAATGTTGTTCTTTCTGTATCATGCTCCCGCAGAATAAG
TACCTGTCTCTTCGCGCACTGAAACTGCATGCACAGCAGTGCCTAAGACA
TAACGCCACCGAACCGCTGCTATTTGCAGTACCCACTACTGTAATTACAC
AGCCCAGTCCACACACGCCTGCAATCTATTGTTGGTGGTAGTGGTCCAAC
ACCGGGGGACAGATCAGCCACCGTGAGCACATAAAAATAAAGCACCGCTC
CCGTGCACACGGCACAGGCTGCGTTTCTGCCAAGTTGCTTAACGAAGTTT
TATGAAACCAACACGGGTTGGACCTCCGTGTCACGCCGAAACATCGCAAC
ATCGCGCAGATGGGGCCACCTACCCGACGAGGACTGCGCTGTCTCCGAAA
TCCGAATGATGATCAAAACGGAACGTAAGGATCGTGCCGCTGCTAAGCCG
CGCAACTACCACCCACAGGCGGCGACGGCGCCGCAGCCGGGAGCATGCGC
AGGGGGTGGATCAGCAGACTTTCCTCCGTCCTGT
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig8507:8862..10545-

>mRNA_M-pyrifera_M_contig8507.19825.1 ID=mRNA_M-pyrifera_M_contig8507.19825.1|Name=mRNA_M-pyrifera_M_contig8507.19825.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1146bp|location=Sequence derived from alignment at M-pyrifera_M_contig8507:8862..10545- (Macrocystis pyrifera P11B4 male)
ATGGGTAACCCGCACGACCTCGCCAGCAAGGGAGACGTCGAGGGAATCCG
TAAATTCTTACAGAAATCGGCTTCGAAGGTGGACAAGAAGAACCGGGACG
GACAGACTGCTCTCCACTGCGCTGCGAAAGGATGGGTAACCCGCACGACC
TCGCCAGCAAGGGAGACGTCGAGGGAATCCGTAAATTCTTACAGAAATCG
GCTTCGAAGGTGGACAAGAAGAACCGGGACGGACAGACTGCTCTCCACTG
CGCTGCGAAAGGGGGGCACGTCGAGGTTTGCAGGGAGCTTATCGCTTCTG
TGGGGAGCGTGGACGCCCAGGATGCGCAGCTCCGCACGCCTCTGCGGCTC
GCCGTTGAGAACAACAAGCCGCAAGCCGCGAGGGTGCTGTGCGACGCAGG
GGCCTTGACGAGTATCCCTAACTCAGCAGATGGACGAACACCTCTGCACC
TAGCGGCAAGGGATGGATTCACAGAGTGCGCCGAAATTCTTCTCGAGTAT
GGGGCTGTGATCGACGGGAACCCTGACAAGGGGCACGTCGAGGTTTGCAG
GGAGCTTATCGCTTCTGTGGGGAGCGTGGACGCCCAGGATGCGCAGCTCC
GCACGCCTCTGCGGCTCGCCGTTGAGAACAACAAGCCGCAAGCCGCGAGG
GTGCTGTGCGACGCAGGGGCCTTGACGAGTATCCCTAACTCAGCAGATGG
ACGAACACCTCTGCACCTAGCGGCAAGGGATGGATTCACAGAGTGCGCCG
AAATTCTTCTCGAGTATGGGGCTGTGATCGACGGGAACCCTGACAAATGG
GGCCACCTACCCGACGAGGACTGCGCTGTCTCCGAAATCCGAATGATGAT
CAAAACGGAACGTAAGGATCGTGCCGCTGCTAAGCCGCGCAACTACCACC
CACAGGCGGCGACGGCGCCGCAGCCGGGAGCATGCGCAGGGGGTGGATCA
GCAGACTTTCCTCCGTCCTGTATGGGGCCACCTACCCGACGAGGACTGCG
CTGTCTCCGAAATCCGAATGATGATCAAAACGGAACGTAAGGATCGTGCC
GCTGCTAAGCCGCGCAACTACCACCCACAGGCGGCGACGGCGCCGCAGCC
GGGAGCATGCGCAGGGGGTGGATCAGCAGACTTTCCTCCGTCCTGT
back to top