mRNA_M-pyrifera_M_contig85039.19822.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig85039.19822.1
Unique NamemRNA_M-pyrifera_M_contig85039.19822.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig85039.19822.1 vs. uniprot
Match: A0A540VB62_9CHLR (Uncharacterized protein n=1 Tax=Litorilinea aerophila TaxID=1204385 RepID=A0A540VB62_9CHLR)

HSP 1 Score: 58.9 bits (141), Expect = 1.270e-6
Identity = 31/48 (64.58%), Postives = 37/48 (77.08%), Query Frame = 1 
Query:  493 GLYAQANKFGQHCQASGRFAADGDAQTSQYVLRRQTTDGTANVELFLN 636
            G++A A+ +G+   ASGRFAA+GDAQTS YVLR QTT GT   ELFLN
Sbjct:  642 GVFANASHYGEMAYASGRFAANGDAQTSVYVLR-QTTSGTTPEELFLN 688
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BLAST of mRNA_M-pyrifera_M_contig85039.19822.1 vs. uniprot
Match: A0A2D5YZI2_9PLAN (Uncharacterized protein n=1 Tax=Planctomycetaceae bacterium TaxID=2026779 RepID=A0A2D5YZI2_9PLAN)

HSP 1 Score: 56.2 bits (134), Expect = 8.510e-6
Identity = 29/45 (64.44%), Postives = 34/45 (75.56%), Query Frame = 1 
Query:  493 GLYAQANKFGQHCQASGRFAADGDAQTSQYVLRRQTTDGTANVEL 627
            G  A A  FGQ  +A+G+F+A GDAQ S YVLRR+TTD TANVEL
Sbjct:  259 GQEAVAEVFGQMARAAGKFSAVGDAQISTYVLRRRTTDATANVEL 303
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig85039.19822.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A540VB62_9CHLR1.270e-664.58Uncharacterized protein n=1 Tax=Litorilinea aeroph... [more]
A0A2D5YZI2_9PLAN8.510e-664.44Uncharacterized protein n=1 Tax=Planctomycetaceae ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig85039contigM-pyrifera_M_contig85039:3..728 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size636
Cds size636
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816758.6728423-CDS-M-pyrifera_M_contig85039:2..1471622816758.6728423-CDS-M-pyrifera_M_contig85039:2..147Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig85039 3..147 -
1692278161.2497654-CDS-M-pyrifera_M_contig85039:2..1471692278161.2497654-CDS-M-pyrifera_M_contig85039:2..147Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig85039 3..147 -
1622816758.6862912-CDS-M-pyrifera_M_contig85039:237..7281622816758.6862912-CDS-M-pyrifera_M_contig85039:237..728Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig85039 238..728 -
1692278161.2675505-CDS-M-pyrifera_M_contig85039:237..7281692278161.2675505-CDS-M-pyrifera_M_contig85039:237..728Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig85039 238..728 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig85039.19822.1prot_M-pyrifera_M_contig85039.19822.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig85039 3..728 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig85039.19822.1

>prot_M-pyrifera_M_contig85039.19822.1 ID=prot_M-pyrifera_M_contig85039.19822.1|Name=mRNA_M-pyrifera_M_contig85039.19822.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=212bp
SVIGGGGLNIIADSRFSVIAGGRKNSVEADRNISAITGGEGNVIKTAGTH
SFIGGGRYNDVASGYSVVAGGKGNTSSGGFSTVSGGLNNVASGGLAAIGG
GYENVALGGRSFVGSGADNYAQGFHTAIVGGRFNTATGNFSFIGAGKYNS
VASGRTYSAICGGCGLYAQANKFGQHCQASGRFAADGDAQTSQYVLRRQT
TDGTANVELFLN
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mRNA from alignment at M-pyrifera_M_contig85039:3..728-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig85039.19822.1 ID=mRNA_M-pyrifera_M_contig85039.19822.1|Name=mRNA_M-pyrifera_M_contig85039.19822.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=726bp|location=Sequence derived from alignment at M-pyrifera_M_contig85039:3..728- (Macrocystis pyrifera P11B4 male)
TCGGTTATTGGCGGAGGTGGACTTAACATAATCGCTGACAGTCGATTTTC
GGTTATCGCTGGGGGAAGGAAAAATTCGGTCGAAGCGGATCGCAATATTT
CGGCGATTACTGGCGGTGAAGGCAATGTGATTAAGACGGCTGGCACACAT
AGCTTTATCGGAGGCGGCAGATACAACGACGTTGCCAGTGGCTACAGTGT
TGTTGCGGGTGGCAAAGGAAATACCTCTAGCGGAGGTTTTTCGACAGTAT
CTGGCGGTCTTAATAATGTTGCCAGTGGCGGTTTGGCGGCGATTGGGGGT
GGCTACGAAAATGTTGCGTTAGGAGGGAGATCGTTTGTCGGTAGTGGTGC
GGACAACTATGCGCAAGGATTTCACACGGCAATTGTGGGTGGCAGATTCA
ATACAGCTACAGGAAACTTCTCGTTTATTGGTGCTGGGAAATACAACTCG
GTCGCGTCGGGTCGGACTTATTCAGCGATTTGCGGAGGATGGTACAACGA
TATTGCTGCTCCGGCGAATCACTCGTTCATCGGGAGTGGTCGTTACAACA
GTATCACCGGTGCCTACGCAGGCATTCTGAGTGGTCTTTACGCCCAGGCC
AACAAGTTCGGTCAGCATTGCCAAGCTTCTGGTCGCTTTGCCGCCGATGG
CGATGCGCAAACATCGCAGTACGTGCTCCGTCGTCAGACGACCGATGGCA
CGGCGAACGTGGAATTGTTTCTCAAC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig85039:3..728-

>mRNA_M-pyrifera_M_contig85039.19822.1 ID=mRNA_M-pyrifera_M_contig85039.19822.1|Name=mRNA_M-pyrifera_M_contig85039.19822.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1272bp|location=Sequence derived from alignment at M-pyrifera_M_contig85039:3..728- (Macrocystis pyrifera P11B4 male)
TCGGTTATTGGCGGAGGTGGACTTAACATAATCGCTGACAGTCGATTTTC
GGTTATCGCTGGGGGAAGGAAAAATTCGGTCGAAGCGGATCGCAATATTT
CGGCGATTACTGGCGGTGAAGGCAATGTGATTAAGACGGCTGGCACACAT
AGCTTTATCGGAGGCGGCAGATACAACGACGTTGCCAGTGGCTACAGTGT
TGTTGCGGGTGGCAAAGGAAATACCTCTAGCGGAGGTTTTTCGACAGTAT
CTGGCGGTCTTAATAATGTTGCCAGTGGCGGTTTGGCGGCGATTGGGGGT
GGCTACGAAAATGTTGCGTTAGGAGGGAGATCGTTTGTCGGTAGTGGTGC
GGACAACTATGCGCAAGGATTTCACACGGCAATTGTGGGTGGCAGATTCA
ATACAGCTACAGGAAACTTCTCGTTTATTGGTGCTGGGAAATACAACTCG
GTCGCGTCGGGTCGGACTTATTCAGCGATTTGCGGAGGATGTCGGTTATT
GGCGGAGGTGGACTTAACATAATCGCTGACAGTCGATTTTCGGTTATCGC
TGGGGGAAGGAAAAATTCGGTCGAAGCGGATCGCAATATTTCGGCGATTA
CTGGCGGTGAAGGCAATGTGATTAAGACGGCTGGCACACATAGCTTTATC
GGAGGCGGCAGATACAACGACGTTGCCAGTGGCTACAGTGTTGTTGCGGG
TGGCAAAGGAAATACCTCTAGCGGAGGTTTTTCGACAGTATCTGGCGGTC
TTAATAATGTTGCCAGTGGCGGTTTGGCGGCGATTGGGGGTGGCTACGAA
AATGTTGCGTTAGGAGGGAGATCGTTTGTCGGTAGTGGTGCGGACAACTA
TGCGCAAGGATTTCACACGGCAATTGTGGGTGGCAGATTCAATACAGCTA
CAGGAAACTTCTCGTTTATTGGTGCTGGGAAATACAACTCGGTCGCGTCG
GGTCGGACTTATTCAGCGATTTGCGGAGGATGTGGTCTTTACGCCCAGGC
CAACAAGTTCGGTCAGCATTGCCAAGCTTCTGGTCGCTTTGCCGCCGATG
GCGATGCGCAAACATCGCAGTACGTGCTCCGTCGTCAGACGACCGATGGC
ACGGCGAACGTGGAATTGTTTCTCAACTGGTCTTTACGCCCAGGCCAACA
AGTTCGGTCAGCATTGCCAAGCTTCTGGTCGCTTTGCCGCCGATGGCGAT
GCGCAAACATCGCAGTACGTGCTCCGTCGTCAGACGACCGATGGCACGGC
GAACGTGGAATTGTTTCTCAAC
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