mRNA_M-pyrifera_M_contig85023.19816.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig85023.19816.1
Unique NamemRNA_M-pyrifera_M_contig85023.19816.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
[Close]
BLAST of mRNA_M-pyrifera_M_contig85023.19816.1 vs. uniprot
Match: A0A0G2RLT8_CNAME (Phosphoacetylglucosamine mutase n=2 Tax=Crambidae TaxID=268499 RepID=A0A0G2RLT8_CNAME)

HSP 1 Score: 83.6 bits (205), Expect = 6.520e-17
Identity = 47/73 (64.38%), Postives = 52/73 (71.23%), Query Frame = 1 
Query:   19 ERRLEEPEALQSAIDEAVASIDADSGRAFVRPSGTEDVVRIYAEATSQEQADAIATTVAQKVHSLAGGTAEEP 237
            ERR   PE LQS IDE VA+    SGRAFVRPSGTEDVVR+Y+EA +QE AD +A  VAQ V  LAGG  E P
Sbjct:  474 ERRCTAPEGLQSKIDELVAAYT--SGRAFVRPSGTEDVVRVYSEADTQEAADKLAAEVAQAVFDLAGGVGERP 544
[Close]
BLAST of mRNA_M-pyrifera_M_contig85023.19816.1 vs. uniprot
Match: A0A5A8C5Y4_CAFRO (Phosphoacetylglucosamine mutase n=3 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8C5Y4_CAFRO)

HSP 1 Score: 83.6 bits (205), Expect = 6.620e-17
Identity = 46/74 (62.16%), Postives = 53/74 (71.62%), Query Frame = 1 
Query:   16 DERRLEEPEALQSAIDEAVASIDADSGRAFVRPSGTEDVVRIYAEATSQEQADAIATTVAQKVHSLAGGTAEEP 237
            DE RLE P ALQ+AIDEAV ++D   GRAFVRPSGTEDVVR+YAEA +   AD +A  VA+ V  LAGG    P
Sbjct:  538 DESRLEAPAALQAAIDEAVKAVDC--GRAFVRPSGTEDVVRVYAEAATVAAADELAAVVARAVFDLAGGQGSRP 609
[Close]
BLAST of mRNA_M-pyrifera_M_contig85023.19816.1 vs. uniprot
Match: A0A5J4YEV5_9CHLO (Phosphoacetylglucosamine mutase n=1 Tax=Trebouxia sp. A1-2 TaxID=2608996 RepID=A0A5J4YEV5_9CHLO)

HSP 1 Score: 82.8 bits (203), Expect = 1.200e-16
Identity = 44/73 (60.27%), Postives = 55/73 (75.34%), Query Frame = 1 
Query:   19 ERRLEEPEALQSAIDEAVASIDADSGRAFVRPSGTEDVVRIYAEATSQEQADAIATTVAQKVHSLAGGTAEEP 237
            E ++  P  LQ+ ID+AVA + A  GRAFVRPSGTEDVVR+YAEAT+QE AD +A  VA++VH +AGG  E P
Sbjct:  452 ETQVAAPAGLQALIDKAVAGVPA--GRAFVRPSGTEDVVRVYAEATTQEAADKLALDVARQVHKVAGGVGEAP 522
[Close]
BLAST of mRNA_M-pyrifera_M_contig85023.19816.1 vs. uniprot
Match: D6X3A7_TRICA (Phosphoacetylglucosamine mutase n=2 Tax=Tribolium TaxID=7069 RepID=D6X3A7_TRICA)

HSP 1 Score: 82.4 bits (202), Expect = 1.680e-16
Identity = 43/73 (58.90%), Postives = 53/73 (72.60%), Query Frame = 1 
Query:   19 ERRLEEPEALQSAIDEAVASIDADSGRAFVRPSGTEDVVRIYAEATSQEQADAIATTVAQKVHSLAGGTAEEP 237
            ER    PE LQ+ ID  VA  D   GR+FVRPSGTED+VR+YAEA ++EQAD +A  VA+KVH +AGGT + P
Sbjct:  511 ERVCVTPEGLQAEIDALVAKFD--KGRSFVRPSGTEDIVRVYAEAATREQADELALQVARKVHEMAGGTGDSP 581
[Close]
BLAST of mRNA_M-pyrifera_M_contig85023.19816.1 vs. uniprot
Match: A0A2P6TT03_CHLSO (Phosphoacetylglucosamine mutase n=1 Tax=Chlorella sorokiniana TaxID=3076 RepID=A0A2P6TT03_CHLSO)

HSP 1 Score: 82.0 bits (201), Expect = 2.260e-16
Identity = 45/73 (61.64%), Postives = 53/73 (72.60%), Query Frame = 1 
Query:   19 ERRLEEPEALQSAIDEAVASIDADSGRAFVRPSGTEDVVRIYAEATSQEQADAIATTVAQKVHSLAGGTAEEP 237
            E R+ EP  LQ+AID AVA +    GR+FVRPSGTEDVVR+YAEA SQE ADA+A  VA+ VH+ AGG    P
Sbjct:  465 ETRVAEPRGLQAAIDAAVAGVPR--GRSFVRPSGTEDVVRVYAEAESQEAADALADAVARLVHAKAGGVGPAP 535
[Close]
BLAST of mRNA_M-pyrifera_M_contig85023.19816.1 vs. uniprot
Match: UPI00200BB568 (phosphoacetylglucosamine mutase n=1 Tax=Leguminivora glycinivorella TaxID=1035111 RepID=UPI00200BB568)

HSP 1 Score: 81.6 bits (200), Expect = 3.020e-16
Identity = 45/73 (61.64%), Postives = 52/73 (71.23%), Query Frame = 1 
Query:   19 ERRLEEPEALQSAIDEAVASIDADSGRAFVRPSGTEDVVRIYAEATSQEQADAIATTVAQKVHSLAGGTAEEP 237
            ERR   PE LQS IDE VA+    SGR+FVRPSGTEDVVR+YAEA +QE AD +A  V+Q V  LAGG  + P
Sbjct:  428 ERRCTAPEGLQSRIDELVATYK--SGRSFVRPSGTEDVVRVYAEADTQENADKLAAQVSQAVFDLAGGVGDRP 498
[Close]
BLAST of mRNA_M-pyrifera_M_contig85023.19816.1 vs. uniprot
Match: A0A8J6HEL9_TENMO (PGM_PMM_IV domain-containing protein n=1 Tax=Tenebrio molitor TaxID=7067 RepID=A0A8J6HEL9_TENMO)

HSP 1 Score: 77.8 bits (190), Expect = 3.030e-16
Identity = 42/73 (57.53%), Postives = 52/73 (71.23%), Query Frame = 1 
Query:   19 ERRLEEPEALQSAIDEAVASIDADSGRAFVRPSGTEDVVRIYAEATSQEQADAIATTVAQKVHSLAGGTAEEP 237
            ERR   PE+LQ  ID  VA      GR+FVR SGTED+VR+YAEA+++E+AD +A  VA+KVH LAGGT   P
Sbjct:   87 ERRCVTPESLQPEIDALVAKYKR--GRSFVRASGTEDIVRVYAEASTREEADQLAVEVAKKVHELAGGTGNPP 157
[Close]
BLAST of mRNA_M-pyrifera_M_contig85023.19816.1 vs. uniprot
Match: F0YN29_AURAN (Putative phosphoglucomutase n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YN29_AURAN)

HSP 1 Score: 81.6 bits (200), Expect = 3.130e-16
Identity = 46/79 (58.23%), Postives = 56/79 (70.89%), Query Frame = 1 
Query:    1 LRPQADERRLEEPEALQSAIDEAVASIDADSGRAFVRPSGTEDVVRIYAEATSQEQADAIATTVAQKVHSLAGGTAEEP 237
            L+P A+E RL  P  LQ AID   A   A +GRAFVRPSGTEDVVRIYAEA ++  ADA+AT  A+ V+ LAGG  ++P
Sbjct:  500 LKPNANETRLLSPTNLQDAIDALAAK--APNGRAFVRPSGTEDVVRIYAEARTRADADALATACARAVYDLAGGLGDKP 576
[Close]
BLAST of mRNA_M-pyrifera_M_contig85023.19816.1 vs. uniprot
Match: E1ZGR0_CHLVA (PGM_PMM_IV domain-containing protein (Fragment) n=1 Tax=Chlorella variabilis TaxID=554065 RepID=E1ZGR0_CHLVA)

HSP 1 Score: 78.2 bits (191), Expect = 4.020e-16
Identity = 43/73 (58.90%), Postives = 52/73 (71.23%), Query Frame = 1 
Query:   19 ERRLEEPEALQSAIDEAVASIDADSGRAFVRPSGTEDVVRIYAEATSQEQADAIATTVAQKVHSLAGGTAEEP 237
            E R+ +P  LQ+AID AVA +   SGR+FVRPSGTEDVVR+YAEA SQ  AD +A  VA+ VH+ AGG    P
Sbjct:  118 ETRVAQPAGLQAAIDGAVAGVP--SGRSFVRPSGTEDVVRVYAEAESQAAADELAAAVARLVHAQAGGVGPAP 188
[Close]
BLAST of mRNA_M-pyrifera_M_contig85023.19816.1 vs. uniprot
Match: A0A0D2LTW9_9CHLO (Phosphoacetylglucosamine mutase n=1 Tax=Monoraphidium neglectum TaxID=145388 RepID=A0A0D2LTW9_9CHLO)

HSP 1 Score: 78.2 bits (191), Expect = 7.600e-16
Identity = 43/73 (58.90%), Postives = 50/73 (68.49%), Query Frame = 1 
Query:   19 ERRLEEPEALQSAIDEAVASIDADSGRAFVRPSGTEDVVRIYAEATSQEQADAIATTVAQKVHSLAGGTAEEP 237
            ERR   PE LQ+AID  VA +    GRAF RPSGTED VR+YAEA +QE ADA+A  V + V+ LAGG  E P
Sbjct:  152 ERRCVAPEGLQAAIDGVVAKVPR--GRAFARPSGTEDAVRVYAEAETQEAADALAREVGRVVYDLAGGVGERP 222
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig85023.19816.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A0G2RLT8_CNAME6.520e-1764.38Phosphoacetylglucosamine mutase n=2 Tax=Crambidae ... [more]
A0A5A8C5Y4_CAFRO6.620e-1762.16Phosphoacetylglucosamine mutase n=3 Tax=Cafeteria ... [more]
A0A5J4YEV5_9CHLO1.200e-1660.27Phosphoacetylglucosamine mutase n=1 Tax=Trebouxia ... [more]
D6X3A7_TRICA1.680e-1658.90Phosphoacetylglucosamine mutase n=2 Tax=Tribolium ... [more]
A0A2P6TT03_CHLSO2.260e-1661.64Phosphoacetylglucosamine mutase n=1 Tax=Chlorella ... [more]
UPI00200BB5683.020e-1661.64phosphoacetylglucosamine mutase n=1 Tax=Leguminivo... [more]
A0A8J6HEL9_TENMO3.030e-1657.53PGM_PMM_IV domain-containing protein n=1 Tax=Teneb... [more]
F0YN29_AURAN3.130e-1658.23Putative phosphoglucomutase n=1 Tax=Aureococcus an... [more]
E1ZGR0_CHLVA4.020e-1658.90PGM_PMM_IV domain-containing protein (Fragment) n=... [more]
A0A0D2LTW9_9CHLO7.600e-1658.90Phosphoacetylglucosamine mutase n=1 Tax=Monoraphid... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig85023contigM-pyrifera_M_contig85023:614..865 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeArthropoda
Seed ortholog score82.4
Seed ortholog evalue1.1e-13
Seed eggNOG ortholog7070.TC011920-PA
KEGG rclassRC00408
KEGG koko:K01836
KEGG ReactionR08193
KEGG Pathwayko00520,ko01100,ko01130,map00520,map01100,map01130
Hectar predicted targeting categoryother localisation
GOsGO:0001704,GO:0001707,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006040,GO:0006047,GO:0006048,GO:0006139,GO:0006725,GO:0006793,GO:0006807,GO:0007275,GO:0007369,GO:0007498,GO:0008150,GO:0008152,GO:0009058,GO:0009225,GO:0009226,GO:0009653,GO:0009790,GO:0009888,GO:0009966,GO:0009967,GO:0009987,GO:0010646,GO:0010647,GO:0018130,GO:0019438,GO:0023051,GO:0023056,GO:0032501,GO:0032502,GO:0034641,GO:0034654,GO:0040036,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0045743,GO:0046349,GO:0046483,GO:0048332,GO:0048513,GO:0048518,GO:0048522,GO:0048583,GO:0048584,GO:0048598,GO:0048646,GO:0048729,GO:0048731,GO:0048856,GO:0050789,GO:0050794,GO:0055086,GO:0060438,GO:0060541,GO:0065007,GO:0071704,GO:0090287,GO:1901135,GO:1901137,GO:1901360,GO:1901362,GO:1901576
EggNOG free text desc.Catalyzes the conversion of GlcNAc-6-P into GlcNAc-1-P during the synthesis of uridine diphosphate UDP-GlcNAc, a sugar nucleotide critical to multiple glycosylation pathways including protein N- and O-glycosylation
EggNOG OGs38CHB@33154,3BFTW@33208,3CRUW@33213,3SHHS@50557,41WXK@6656,COG1109@1,KOG2537@2759
EC5.4.2.3
COG Functional cat.G
Best tax levelInsecta
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Exons1
Model size252
Cds size252
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816758.4374623-CDS-M-pyrifera_M_contig85023:613..8651622816758.4374623-CDS-M-pyrifera_M_contig85023:613..865Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig85023 614..865 -
1692278161.148036-CDS-M-pyrifera_M_contig85023:613..8651692278161.148036-CDS-M-pyrifera_M_contig85023:613..865Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig85023 614..865 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig85023.19816.1prot_M-pyrifera_M_contig85023.19816.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig85023 614..865 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig85023.19816.1

>prot_M-pyrifera_M_contig85023.19816.1 ID=prot_M-pyrifera_M_contig85023.19816.1|Name=mRNA_M-pyrifera_M_contig85023.19816.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=84bp
LRPQADERRLEEPEALQSAIDEAVASIDADSGRAFVRPSGTEDVVRIYAE
ATSQEQADAIATTVAQKVHSLAGGTAEEPPHWP*
back to top

mRNA from alignment at M-pyrifera_M_contig85023:614..865-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig85023.19816.1 ID=mRNA_M-pyrifera_M_contig85023.19816.1|Name=mRNA_M-pyrifera_M_contig85023.19816.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=252bp|location=Sequence derived from alignment at M-pyrifera_M_contig85023:614..865- (Macrocystis pyrifera P11B4 male)
TTACGTCCACAGGCGGATGAGCGAAGGTTAGAGGAACCAGAGGCATTGCA
GTCTGCAATCGACGAGGCAGTAGCTTCCATCGACGCTGATTCCGGAAGGG
CCTTTGTCCGCCCCTCTGGCACCGAGGATGTCGTTCGAATCTACGCTGAA
GCAACCTCGCAAGAACAAGCAGACGCCATCGCCACCACTGTCGCCCAGAA
AGTGCACTCTCTCGCAGGAGGCACCGCCGAAGAACCACCACATTGGCCCT
AG
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig85023:614..865-

>mRNA_M-pyrifera_M_contig85023.19816.1 ID=mRNA_M-pyrifera_M_contig85023.19816.1|Name=mRNA_M-pyrifera_M_contig85023.19816.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=504bp|location=Sequence derived from alignment at M-pyrifera_M_contig85023:614..865- (Macrocystis pyrifera P11B4 male)
TTACGTCCACAGGCGGATGAGCGAAGGTTAGAGGAACCAGAGGCATTGCA
GTCTGCAATCGACGAGGCAGTAGCTTCCATCGACGCTGATTCCGGAAGGG
CCTTTGTCCGCCCCTCTGGCACCGAGGATGTCGTTCGAATCTACGCTGAA
GCAACCTCGCAAGAACAAGCAGACGCCATCGCCACCACTGTCGCCCAGAA
AGTGCACTCTCTCGCAGGAGGCACCGCCGAAGAACCACCACATTGGCCCT
AGTTACGTCCACAGGCGGATGAGCGAAGGTTAGAGGAACCAGAGGCATTG
CAGTCTGCAATCGACGAGGCAGTAGCTTCCATCGACGCTGATTCCGGAAG
GGCCTTTGTCCGCCCCTCTGGCACCGAGGATGTCGTTCGAATCTACGCTG
AAGCAACCTCGCAAGAACAAGCAGACGCCATCGCCACCACTGTCGCCCAG
AAAGTGCACTCTCTCGCAGGAGGCACCGCCGAAGAACCACCACATTGGCC
CTAG
back to top