mRNA_M-pyrifera_M_contig85006.19812.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig85006.19812.1
Unique NamemRNA_M-pyrifera_M_contig85006.19812.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig85006.19812.1 vs. uniprot
Match: D7FJE6_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FJE6_ECTSI)

HSP 1 Score: 82.0 bits (201), Expect = 1.940e-16
Identity = 39/58 (67.24%), Postives = 49/58 (84.48%), Query Frame = 1 
Query:    1 GMTLEEYDEMKQQRKPSDRNPDVSLETRLKISARLKEKWKDPTYRERRKGCMPNRQGI 174
            GMTLEEY+EMK+++    R+P V+ ETR KISARLK KW+DP+YRERRK CMPNR+G+
Sbjct:   88 GMTLEEYEEMKRRKPAGKRDPTVTEETRKKISARLKAKWQDPSYRERRKQCMPNRKGV 145
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BLAST of mRNA_M-pyrifera_M_contig85006.19812.1 vs. uniprot
Match: A0A836CNQ5_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CNQ5_9STRA)

HSP 1 Score: 57.0 bits (136), Expect = 1.520e-7
Identity = 32/64 (50.00%), Postives = 41/64 (64.06%), Query Frame = 1 
Query:    1 GMTLEEYDEMKQQRKPSDRNPD---VSLETRLKISARLKEKWKDPTYRERRKGCMPNRQGIAHS 183
            GMT+EEYD  K++    D       +S ET+ KISARLKEKWKDP +R+ R   +P R+G  HS
Sbjct:  193 GMTVEEYDASKRRTPKRDTKGGQVKLSEETKAKISARLKEKWKDPAFRKERLANIPTRKGRGHS 256
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig85006.19812.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FJE6_ECTSI1.940e-1667.24Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A836CNQ5_9STRA1.520e-750.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig85006contigM-pyrifera_M_contig85006:378..632 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score79.7
Seed ortholog evalue7.1e-13
Seed eggNOG ortholog2880.D7FJE6
Hectar predicted targeting categoryother localisation
EggNOG OGs2D7RE@1,2S59J@2759
Ec32 ortholog descriptionNuclease associated modular domain 3
Ec32 orthologEc-14_006060.1
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size255
Cds size252
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816758.2308362-CDS-M-pyrifera_M_contig85006:377..6291622816758.2308362-CDS-M-pyrifera_M_contig85006:377..629Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig85006 378..629 -
1692278161.0364795-CDS-M-pyrifera_M_contig85006:377..6291692278161.0364795-CDS-M-pyrifera_M_contig85006:377..629Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig85006 378..629 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816758.243808-UTR-M-pyrifera_M_contig85006:629..6321622816758.243808-UTR-M-pyrifera_M_contig85006:629..632Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig85006 630..632 -
1692278161.0497377-UTR-M-pyrifera_M_contig85006:629..6321692278161.0497377-UTR-M-pyrifera_M_contig85006:629..632Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig85006 630..632 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig85006.19812.1prot_M-pyrifera_M_contig85006.19812.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig85006 378..629 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig85006.19812.1

>prot_M-pyrifera_M_contig85006.19812.1 ID=prot_M-pyrifera_M_contig85006.19812.1|Name=mRNA_M-pyrifera_M_contig85006.19812.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=84bp
MTLEEYDEMKQQRKPSDRNPDVSLETRLKISARLKEKWKDPTYRERRKGC
MPNRQGIAHSEETKARIAAAVKARWQDPAYREKV
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mRNA from alignment at M-pyrifera_M_contig85006:378..632-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig85006.19812.1 ID=mRNA_M-pyrifera_M_contig85006.19812.1|Name=mRNA_M-pyrifera_M_contig85006.19812.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=255bp|location=Sequence derived from alignment at M-pyrifera_M_contig85006:378..632- (Macrocystis pyrifera P11B4 male)
GGCATGACCTTGGAAGAGTACGACGAGATGAAGCAGCAACGGAAGCCCTC
CGATCGAAATCCAGACGTTTCATTGGAAACCCGGCTCAAGATCAGCGCCA
GGCTGAAAGAGAAGTGGAAGGACCCCACCTACCGGGAGCGCCGCAAGGGC
TGCATGCCCAACCGGCAGGGCATAGCCCACTCGGAGGAGACGAAGGCGCG
CATCGCAGCGGCGGTGAAGGCGCGGTGGCAAGACCCGGCGTATCGAGAAA
AGGTT
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig85006:378..632-

>mRNA_M-pyrifera_M_contig85006.19812.1 ID=mRNA_M-pyrifera_M_contig85006.19812.1|Name=mRNA_M-pyrifera_M_contig85006.19812.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=504bp|location=Sequence derived from alignment at M-pyrifera_M_contig85006:378..632- (Macrocystis pyrifera P11B4 male)
ATGACCTTGGAAGAGTACGACGAGATGAAGCAGCAACGGAAGCCCTCCGA
TCGAAATCCAGACGTTTCATTGGAAACCCGGCTCAAGATCAGCGCCAGGC
TGAAAGAGAAGTGGAAGGACCCCACCTACCGGGAGCGCCGCAAGGGCTGC
ATGCCCAACCGGCAGGGCATAGCCCACTCGGAGGAGACGAAGGCGCGCAT
CGCAGCGGCGGTGAAGGCGCGGTGGCAAGACCCGGCGTATCGAGAAAAGG
TTATGACCTTGGAAGAGTACGACGAGATGAAGCAGCAACGGAAGCCCTCC
GATCGAAATCCAGACGTTTCATTGGAAACCCGGCTCAAGATCAGCGCCAG
GCTGAAAGAGAAGTGGAAGGACCCCACCTACCGGGAGCGCCGCAAGGGCT
GCATGCCCAACCGGCAGGGCATAGCCCACTCGGAGGAGACGAAGGCGCGC
ATCGCAGCGGCGGTGAAGGCGCGGTGGCAAGACCCGGCGTATCGAGAAAA
GGTT
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