mRNA_M-pyrifera_M_contig84905.19788.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig84905.19788.1
Unique NamemRNA_M-pyrifera_M_contig84905.19788.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig84905.19788.1 vs. uniprot
Match: A0A2E0T212_9ACTN (Aminoacyl-tRNA hydrolase n=3 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A2E0T212_9ACTN)

HSP 1 Score: 97.1 bits (240), Expect = 4.540e-24
Identity = 55/85 (64.71%), Postives = 64/85 (75.29%), Query Frame = 1
Query:    1 PEHLRERVRSKLGDVVRVTVDDERSQYRNRQIAMERLRARVEQAGHVERARRPTKPTRGSKRRRLDAXXXXXXXXXQRRRPSSDD 255
            P  LRERVR+KLGDVVRVTVDDERSQ RNR+IA+ERLR R+  AG VE+ RR TKPTRGS+RRR++A          RRRP  +D
Sbjct:   47 PPALRERVRAKLGDVVRVTVDDERSQVRNREIALERLRGRIHNAGVVEKPRRATKPTRGSQRRRVEAKRRRGDVKKGRRRPGHED 131          
BLAST of mRNA_M-pyrifera_M_contig84905.19788.1 vs. uniprot
Match: A0A6B1AY51_9ACTN (Aminoacyl-tRNA hydrolase n=1 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A6B1AY51_9ACTN)

HSP 1 Score: 83.2 bits (204), Expect = 1.360e-18
Identity = 56/85 (65.88%), Postives = 70/85 (82.35%), Query Frame = 1
Query:    1 PEHLRERVRSKLGDVVRVTVDDERSQYRNRQIAMERLRARVEQAGHVERARRPTKPTRGSKRRRLDAXXXXXXXXXQRRRPSSDD 255
            PE LR RV ++LG+V+RVTVD ERSQ RNRQIA+ER++ R++ A   +R R  TKPTRGS+RRR++AXXXXXXXXX RR PS+DD
Sbjct:   49 PEALRGRVIARLGNVIRVTVDAERSQLRNRQIALERIQQRIDSASRTKRKRTATKPTRGSQRRRVEAXXXXXXXXXNRRAPSADD 133          
BLAST of mRNA_M-pyrifera_M_contig84905.19788.1 vs. uniprot
Match: A0A2E0RPJ8_9ACTN (Aminoacyl-tRNA hydrolase n=2 Tax=Acidimicrobiales TaxID=84993 RepID=A0A2E0RPJ8_9ACTN)

HSP 1 Score: 79.3 bits (194), Expect = 4.980e-17
Identity = 46/84 (54.76%), Postives = 60/84 (71.43%), Query Frame = 1
Query:    4 EHLRERVRSKLGDVVRVTVDDERSQYRNRQIAMERLRARVEQAGHVERARRPTKPTRGSKRRRLDAXXXXXXXXXQRRRPSSDD 255
            E  R+RVRS+LG  VRV+ DDERSQ RNR++A +RL  R+ +A  VER R+ TKPT+GSKRRRL+A         QRR+P+ +D
Sbjct:   54 EAQRDRVRSRLGSEVRVSADDERSQLRNRELAEQRLADRLREALRVERKRKATKPTKGSKRRRLEAKKQHGEKKRQRRKPTRND 137          
BLAST of mRNA_M-pyrifera_M_contig84905.19788.1 vs. uniprot
Match: A0A524N338_9ACTN (Aminoacyl-tRNA hydrolase n=1 Tax=Acidimicrobiales bacterium TaxID=2201156 RepID=A0A524N338_9ACTN)

HSP 1 Score: 78.2 bits (191), Expect = 1.250e-16
Identity = 48/81 (59.26%), Postives = 55/81 (67.90%), Query Frame = 1
Query:   13 RERVRSKLGDVVRVTVDDERSQYRNRQIAMERLRARVEQAGHVERARRPTKPTRGSKRRRLDAXXXXXXXXXQRRRPSSDD 255
            RERV SKLG +VRV  DDERSQ RNR +A ERL AR+  A HV R RR TKPTRGS+RRR++A          RR PS D+
Sbjct:   53 RERVLSKLGPIVRVVADDERSQLRNRTLAEERLAARLRGALHVPRTRRATKPTRGSQRRRVEAKKQRGETKRYRRPPSVDE 133          
BLAST of mRNA_M-pyrifera_M_contig84905.19788.1 vs. uniprot
Match: A0A7V9CEM7_9ACTN (Aminoacyl-tRNA hydrolase n=1 Tax=Solirubrobacterales bacterium TaxID=1909295 RepID=A0A7V9CEM7_9ACTN)

HSP 1 Score: 76.3 bits (186), Expect = 7.090e-16
Identity = 44/81 (54.32%), Postives = 55/81 (67.90%), Query Frame = 1
Query:   13 RERVRSKLGDVVRVTVDDERSQYRNRQIAMERLRARVEQAGHVERARRPTKPTRGSKRRRLDAXXXXXXXXXQRRRPSSDD 255
            +ERVR +LG VVR    D RSQ RNR++A+ERLR R+  A HV+RARR T+PT+GSK RR++A          RRRP  DD
Sbjct:   53 KERVRGRLGPVVRAVAQDGRSQQRNRELALERLRGRLASALHVQRARRATRPTKGSKVRRVEAKKRTGAVKRTRRRPGVDD 133          
BLAST of mRNA_M-pyrifera_M_contig84905.19788.1 vs. uniprot
Match: A0A6C7EF03_ILUCY (RF_PROK_I domain-containing protein n=1 Tax=Ilumatobacter coccineus (strain NBRC 103263 / KCTC 29153 / YM16-304) TaxID=1313172 RepID=A0A6C7EF03_ILUCY)

HSP 1 Score: 75.5 bits (184), Expect = 1.980e-15
Identity = 49/84 (58.33%), Postives = 54/84 (64.29%), Query Frame = 1
Query:    4 EHLRERVRSKLGDVVRVTVDDERSQYRNRQIAMERLRARVEQAGHVERARRPTKPTRGSKRRRLDAXXXXXXXXXQRRRPSSDD 255
            E  R RVR +LGDVVRV VDDERSQ RNR IA +RL  +V  A  V + RR TKPTRGS+RRRL A         QRR P  DD
Sbjct:   64 EVQRARVRKRLGDVVRVVVDDERSQVRNRDIARQRLVDKVRGAVAVPKRRRATKPTRGSQRRRLAAKSQRSELKQQRRSPRHDD 147          
BLAST of mRNA_M-pyrifera_M_contig84905.19788.1 vs. uniprot
Match: A0A8F4FSJ0_9ACTN (Aminoacyl-tRNA hydrolase n=1 Tax=Aquihabitans sp. G128 TaxID=2849779 RepID=A0A8F4FSJ0_9ACTN)

HSP 1 Score: 73.2 bits (178), Expect = 1.280e-14
Identity = 44/80 (55.00%), Postives = 53/80 (66.25%), Query Frame = 1
Query:   13 RERVRSKLGDVVRVTVDDERSQYRNRQIAMERLRARVEQAGHVERARRPTKPTRGSKRRRLDAXXXXXXXXXQRRRPSSD 252
            RERV +KLG  VR+ VD+ERSQ RNR IA ER  AR+  A HVER RRPTKP++G+K+RRL +          RR P  D
Sbjct:   58 RERVLAKLGPTVRIVVDEERSQLRNRTIAEERFVARLAAALHVERPRRPTKPSKGAKQRRLTSKKQRSETKANRRSPGRD 137          
BLAST of mRNA_M-pyrifera_M_contig84905.19788.1 vs. uniprot
Match: A0A3D3Q7U7_9ACTN (Aminoacyl-tRNA hydrolase n=1 Tax=Actinomycetia bacterium TaxID=1883427 RepID=A0A3D3Q7U7_9ACTN)

HSP 1 Score: 72.4 bits (176), Expect = 2.510e-14
Identity = 42/85 (49.41%), Postives = 53/85 (62.35%), Query Frame = 1
Query:    1 PEHLRERVRSKLGDVVRVTVDDERSQYRNRQIAMERLRARVEQAGHVERARRPTKPTRGSKRRRLDAXXXXXXXXXQRRRPSSDD 255
            P+ + ERVRSKLGD VR+    ERSQ+RNR+ A+ RL  R++ AG   RAR PT+PT GS RRRL+           RR P  D+
Sbjct:   52 PDDIVERVRSKLGDSVRIVAAAERSQWRNREAALRRLAVRLDAAGRSRRARTPTRPTTGSVRRRLETKRLRSQVKTTRRAPGEDE 136          
BLAST of mRNA_M-pyrifera_M_contig84905.19788.1 vs. uniprot
Match: UPI001F4C8F37 (aminoacyl-tRNA hydrolase n=1 Tax=Ilumatobacter nonamiensis TaxID=467093 RepID=UPI001F4C8F37)

HSP 1 Score: 72.0 bits (175), Expect = 3.800e-14
Identity = 44/84 (52.38%), Postives = 53/84 (63.10%), Query Frame = 1
Query:    4 EHLRERVRSKLGDVVRVTVDDERSQYRNRQIAMERLRARVEQAGHVERARRPTKPTRGSKRRRLDAXXXXXXXXXQRRRPSSDD 255
            E  R RV  +LG  VR+  DDERSQ RNR +A +RL  ++  A  VER RRPTKPTRGS+RRRL+          QRRRP  +D
Sbjct:   57 ESQRARVIERLGSPVRIVADDERSQVRNRSLAEQRLVDKLRGALRVERRRRPTKPTRGSQRRRLETKAQRSELKRQRRRPRPED 140          
BLAST of mRNA_M-pyrifera_M_contig84905.19788.1 vs. uniprot
Match: A0A7Y2GK95_9ACTN (Aminoacyl-tRNA hydrolase n=1 Tax=Acidimicrobiales bacterium TaxID=2201156 RepID=A0A7Y2GK95_9ACTN)

HSP 1 Score: 68.9 bits (167), Expect = 5.530e-13
Identity = 49/81 (60.49%), Postives = 63/81 (77.78%), Query Frame = 1
Query:   13 RERVRSKLGDVVRVTVDDERSQYRNRQIAMERLRARVEQAGHVERARRPTKPTRGSKRRRLDAXXXXXXXXXQRRRPSSDD 255
            R R+ +KLG ++RV VDD RSQ RNR IA+ERL  R+E A   ++ RR TKP+RG+++RRL+AXXXXXXXX QR+RP  DD
Sbjct:   56 RARLITKLGPLLRVVVDDTRSQARNRSIALERLADRIEVAQRQDKLRRKTKPSRGAQKRRLEAXXXXXXXXRQRQRPRHDD 136          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig84905.19788.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2E0T212_9ACTN4.540e-2464.71Aminoacyl-tRNA hydrolase n=3 Tax=Acidimicrobiaceae... [more]
A0A6B1AY51_9ACTN1.360e-1865.88Aminoacyl-tRNA hydrolase n=1 Tax=Acidimicrobiaceae... [more]
A0A2E0RPJ8_9ACTN4.980e-1754.76Aminoacyl-tRNA hydrolase n=2 Tax=Acidimicrobiales ... [more]
A0A524N338_9ACTN1.250e-1659.26Aminoacyl-tRNA hydrolase n=1 Tax=Acidimicrobiales ... [more]
A0A7V9CEM7_9ACTN7.090e-1654.32Aminoacyl-tRNA hydrolase n=1 Tax=Solirubrobacteral... [more]
A0A6C7EF03_ILUCY1.980e-1558.33RF_PROK_I domain-containing protein n=1 Tax=Ilumat... [more]
A0A8F4FSJ0_9ACTN1.280e-1455.00Aminoacyl-tRNA hydrolase n=1 Tax=Aquihabitans sp. ... [more]
A0A3D3Q7U7_9ACTN2.510e-1449.41Aminoacyl-tRNA hydrolase n=1 Tax=Actinomycetia bac... [more]
UPI001F4C8F373.800e-1452.38aminoacyl-tRNA hydrolase n=1 Tax=Ilumatobacter non... [more]
A0A7Y2GK95_9ACTN5.530e-1360.49Aminoacyl-tRNA hydrolase n=1 Tax=Acidimicrobiales ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig84905contigM-pyrifera_M_contig84905:613..870 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score77.0
Seed ortholog evalue4.7e-12
Seed eggNOG ortholog1313172.YM304_22420
Preferred nameyaeJ
KEGG koko:K02835,ko:K15034
Hectar predicted targeting categoryother localisation
EggNOG free text desc.translation release factor activity
EggNOG OGsCOG0216@1,COG0216@2
COG Functional cat.J
Best tax levelBacteria
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03012
Exons1
Model size258
Cds size258
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816756.5359478-CDS-M-pyrifera_M_contig84905:612..8701622816756.5359478-CDS-M-pyrifera_M_contig84905:612..870Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig84905 613..870 -
1692278159.850707-CDS-M-pyrifera_M_contig84905:612..8701692278159.850707-CDS-M-pyrifera_M_contig84905:612..870Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig84905 613..870 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig84905.19788.1prot_M-pyrifera_M_contig84905.19788.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig84905 613..870 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig84905.19788.1

>prot_M-pyrifera_M_contig84905.19788.1 ID=prot_M-pyrifera_M_contig84905.19788.1|Name=mRNA_M-pyrifera_M_contig84905.19788.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=86bp
PEHLRERVRSKLGDVVRVTVDDERSQYRNRQIAMERLRARVEQAGHVERA
RRPTKPTRGSKRRRLDAKRRRGDVKRQRRRPSSDD*
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mRNA from alignment at M-pyrifera_M_contig84905:613..870-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig84905.19788.1 ID=mRNA_M-pyrifera_M_contig84905.19788.1|Name=mRNA_M-pyrifera_M_contig84905.19788.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=258bp|location=Sequence derived from alignment at M-pyrifera_M_contig84905:613..870- (Macrocystis pyrifera P11B4 male)
CCCGAGCACCTCCGCGAGCGGGTGCGCAGCAAGCTCGGCGACGTGGTCCG GGTCACCGTCGATGACGAGCGTTCCCAGTATCGCAACCGTCAGATCGCCA TGGAGCGGCTCCGGGCCCGCGTCGAGCAGGCCGGACATGTCGAACGAGCA CGACGGCCCACCAAGCCGACAAGGGGGAGCAAGCGCCGCCGGCTCGACGC GAAGCGCCGGCGAGGCGATGTGAAGCGCCAGCGTCGGCGCCCGAGCTCCG ACGACTGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig84905:613..870-

>mRNA_M-pyrifera_M_contig84905.19788.1 ID=mRNA_M-pyrifera_M_contig84905.19788.1|Name=mRNA_M-pyrifera_M_contig84905.19788.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=516bp|location=Sequence derived from alignment at M-pyrifera_M_contig84905:613..870- (Macrocystis pyrifera P11B4 male)
CCCGAGCACCTCCGCGAGCGGGTGCGCAGCAAGCTCGGCGACGTGGTCCG
GGTCACCGTCGATGACGAGCGTTCCCAGTATCGCAACCGTCAGATCGCCA
TGGAGCGGCTCCGGGCCCGCGTCGAGCAGGCCGGACATGTCGAACGAGCA
CGACGGCCCACCAAGCCGACAAGGGGGAGCAAGCGCCGCCGGCTCGACGC
GAAGCGCCGGCGAGGCGATGTGAAGCGCCAGCGTCGGCGCCCGAGCTCCG
ACGACTGACCCGAGCACCTCCGCGAGCGGGTGCGCAGCAAGCTCGGCGAC
GTGGTCCGGGTCACCGTCGATGACGAGCGTTCCCAGTATCGCAACCGTCA
GATCGCCATGGAGCGGCTCCGGGCCCGCGTCGAGCAGGCCGGACATGTCG
AACGAGCACGACGGCCCACCAAGCCGACAAGGGGGAGCAAGCGCCGCCGG
CTCGACGCGAAGCGCCGGCGAGGCGATGTGAAGCGCCAGCGTCGGCGCCC
GAGCTCCGACGACTGA
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