mRNA_M-pyrifera_M_contig84848.19773.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig84848.19773.1
Unique NamemRNA_M-pyrifera_M_contig84848.19773.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig84848.19773.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig84848contigM-pyrifera_M_contig84848:123..623 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size501
Cds size501
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816755.7201743-CDS-M-pyrifera_M_contig84848:122..6231622816755.7201743-CDS-M-pyrifera_M_contig84848:122..623Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig84848 123..623 -
1692278159.3760521-CDS-M-pyrifera_M_contig84848:122..6231692278159.3760521-CDS-M-pyrifera_M_contig84848:122..623Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig84848 123..623 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig84848.19773.1prot_M-pyrifera_M_contig84848.19773.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig84848 123..623 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig84848.19773.1

>prot_M-pyrifera_M_contig84848.19773.1 ID=prot_M-pyrifera_M_contig84848.19773.1|Name=mRNA_M-pyrifera_M_contig84848.19773.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=167bp
LEARVVSLEKQVGEGGVEGLGERVGRLEAKLSLLGELASGSTHMLETVGQ
RARAVAGELERVRSVQESGSGSGGEDVEVGKALEEIREWEGQAGQLQAIA
GRMRALGALHVEAAQFASRLDALEAARDEITATLHAEAKVARELRLAVEH
AASDAKHTIEEIDAAIS
back to top

mRNA from alignment at M-pyrifera_M_contig84848:123..623-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig84848.19773.1 ID=mRNA_M-pyrifera_M_contig84848.19773.1|Name=mRNA_M-pyrifera_M_contig84848.19773.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=501bp|location=Sequence derived from alignment at M-pyrifera_M_contig84848:123..623- (Macrocystis pyrifera P11B4 male)
TTGGAAGCTCGAGTGGTATCGTTGGAGAAACAAGTGGGGGAAGGTGGGGT
GGAGGGGTTGGGAGAACGAGTAGGTCGATTGGAAGCTAAGTTGAGCTTGT
TGGGAGAATTAGCTTCTGGAAGTACTCATATGTTGGAAACTGTCGGCCAA
AGAGCACGAGCAGTGGCTGGAGAATTGGAACGTGTACGTAGTGTACAAGA
GAGTGGTAGTGGTTCTGGTGGAGAGGATGTTGAAGTTGGAAAAGCATTGG
AAGAAATCCGAGAATGGGAAGGACAAGCTGGACAATTGCAAGCCATTGCC
GGGCGGATGAGAGCATTGGGTGCGTTACATGTAGAAGCGGCACAATTTGC
TTCCCGATTGGATGCATTAGAAGCAGCACGGGATGAAATAACTGCAACCC
TTCATGCAGAAGCCAAAGTTGCACGTGAATTAAGACTTGCAGTGGAACAT
GCTGCATCTGACGCCAAGCATACGATCGAGGAAATTGATGCTGCAATCAG
C
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig84848:123..623-

>mRNA_M-pyrifera_M_contig84848.19773.1 ID=mRNA_M-pyrifera_M_contig84848.19773.1|Name=mRNA_M-pyrifera_M_contig84848.19773.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1002bp|location=Sequence derived from alignment at M-pyrifera_M_contig84848:123..623- (Macrocystis pyrifera P11B4 male)
TTGGAAGCTCGAGTGGTATCGTTGGAGAAACAAGTGGGGGAAGGTGGGGT
GGAGGGGTTGGGAGAACGAGTAGGTCGATTGGAAGCTAAGTTGAGCTTGT
TGGGAGAATTAGCTTCTGGAAGTACTCATATGTTGGAAACTGTCGGCCAA
AGAGCACGAGCAGTGGCTGGAGAATTGGAACGTGTACGTAGTGTACAAGA
GAGTGGTAGTGGTTCTGGTGGAGAGGATGTTGAAGTTGGAAAAGCATTGG
AAGAAATCCGAGAATGGGAAGGACAAGCTGGACAATTGCAAGCCATTGCC
GGGCGGATGAGAGCATTGGGTGCGTTACATGTAGAAGCGGCACAATTTGC
TTCCCGATTGGATGCATTAGAAGCAGCACGGGATGAAATAACTGCAACCC
TTCATGCAGAAGCCAAAGTTGCACGTGAATTAAGACTTGCAGTGGAACAT
GCTGCATCTGACGCCAAGCATACGATCGAGGAAATTGATGCTGCAATCAG
CTTGGAAGCTCGAGTGGTATCGTTGGAGAAACAAGTGGGGGAAGGTGGGG
TGGAGGGGTTGGGAGAACGAGTAGGTCGATTGGAAGCTAAGTTGAGCTTG
TTGGGAGAATTAGCTTCTGGAAGTACTCATATGTTGGAAACTGTCGGCCA
AAGAGCACGAGCAGTGGCTGGAGAATTGGAACGTGTACGTAGTGTACAAG
AGAGTGGTAGTGGTTCTGGTGGAGAGGATGTTGAAGTTGGAAAAGCATTG
GAAGAAATCCGAGAATGGGAAGGACAAGCTGGACAATTGCAAGCCATTGC
CGGGCGGATGAGAGCATTGGGTGCGTTACATGTAGAAGCGGCACAATTTG
CTTCCCGATTGGATGCATTAGAAGCAGCACGGGATGAAATAACTGCAACC
CTTCATGCAGAAGCCAAAGTTGCACGTGAATTAAGACTTGCAGTGGAACA
TGCTGCATCTGACGCCAAGCATACGATCGAGGAAATTGATGCTGCAATCA
GC
back to top