mRNA_M-pyrifera_M_contig84822.19761.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig84822.19761.1
Unique NamemRNA_M-pyrifera_M_contig84822.19761.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig84822.19761.1 vs. uniprot
Match: F4PSX7_CAVFA (Squalene synthase n=1 Tax=Cavenderia fasciculata (strain SH3) TaxID=1054147 RepID=F4PSX7_CAVFA)

HSP 1 Score: 325 bits (832), Expect = 7.310e-103
Identity = 151/255 (59.22%), Postives = 192/255 (75.29%), Query Frame = 1
Query:    1 FYLVLRGLDSIEDDMAFPVDRKTALLHSFHECIYQRDWSLDGCGEKEHERVLLRNFGKVISVFLSLDEKYQQVIADITKRMGHGMDEFLHRDLVTIEDWDLYCHYVAGLVGLGLSGLFARSELESQWFATADEASNIMGLFLQKTNIIRDYLEDAHEGRVFWPKEIWSKHAEEITDFIDPKNSRSALACMNELITNALEHIPLCIDYMSRLKEPRVFNFCAIPQAMAIATLARCFNNHQVFEGVVKLRRGESVCV 765
            FYLVLRGLD++EDD   P+D K  ++H F E +YQ  +   G G    ER L+ NF KV+ VFLSL+E +  +I DITKRM +GM EFL +++VT+ +WDLYCHYVAGLVG+GLS +F  S LE +WFATAD+ SN MGL LQKTNIIRDYLED +E R+FWP+EIWSK+  ++ +F +P+ + SAL C+N+LITNAL H  +C+DYM RLK P+V  FCAIPQ MAIATL  C+NNH VF GVVK+R+GE   +
Sbjct:  436 FYLVLRGLDTVEDDTTVPLDVKLPVMHKFAEGLYQPGFKASGYGTNNDERHLVENFDKVVDVFLSLNEGFCPIIQDITKRMAYGMSEFLQKEVVTMPEWDLYCHYVAGLVGIGLSKIFHASGLEGEWFATADKESNEMGLLLQKTNIIRDYLEDINENRIFWPREIWSKYTVKLDNFKNPQYASSALHCLNDLITNALSHTIVCLDYMGRLKNPKVIGFCAIPQVMAIATLNACYNNHGVFTGVVKIRKGERALI 690          
BLAST of mRNA_M-pyrifera_M_contig84822.19761.1 vs. uniprot
Match: F0Z8C6_DICPU (Squalene synthase n=1 Tax=Dictyostelium purpureum TaxID=5786 RepID=F0Z8C6_DICPU)

HSP 1 Score: 311 bits (798), Expect = 4.540e-102
Identity = 146/255 (57.25%), Postives = 188/255 (73.73%), Query Frame = 1
Query:    1 FYLVLRGLDSIEDDMAFPVDRKTALLHSFHECIYQRDWSLDGCGEKEHERVLLRNFGKVISVFLSLDEKYQQVIADITKRMGHGMDEFLHRDLVTIEDWDLYCHYVAGLVGLGLSGLFARSELESQWFATADEASNIMGLFLQKTNIIRDYLEDAHEGRVFWPKEIWSKHAEEITDFIDPKNSRSALACMNELITNALEHIPLCIDYMSRLKEPRVFNFCAIPQAMAIATLARCFNNHQVFEGVVKLRRGESVCV 765
            FYLVLRGLD+IEDD    +  K  ++  F E +YQ  + + G G    E+ L++NF KV+ VFLSL + Y  +I DIT+RM +GM EFL + +VT+ +WDLYCHYVAGLVG+GLS +F  S LES+WFATADE SN MGLFLQKTNIIRDYLED +E R+FWP+++WS++   + +F DPK   SAL C+N+LITNAL H  + +DYMSRLK  +V NFCAIPQ MAI TL  C+NN+ VF GVVK+R+G+   +
Sbjct:   67 FYLVLRGLDTIEDDTTVEIKTKLPVMTQFSEGLYQPGFKVFGYGMNNDEKNLVQNFDKVVDVFLSLGDSYCTIIHDITRRMANGMSEFLQKQVVTLPEWDLYCHYVAGLVGIGLSRIFHASGLESEWFATADEESNQMGLFLQKTNIIRDYLEDINENRIFWPRDVWSRYTLNLENFKDPKYQISALHCLNDLITNALSHAVVALDYMSRLKNDKVINFCAIPQVMAIGTLNACYNNYNVFTGVVKIRKGQRALI 321          
BLAST of mRNA_M-pyrifera_M_contig84822.19761.1 vs. uniprot
Match: A0A152A2W2_9MYCE (Squalene synthase n=1 Tax=Tieghemostelium lacteum TaxID=361077 RepID=A0A152A2W2_9MYCE)

HSP 1 Score: 310 bits (795), Expect = 1.600e-101
Identity = 141/255 (55.29%), Postives = 190/255 (74.51%), Query Frame = 1
Query:    1 FYLVLRGLDSIEDDMAFPVDRKTALLHSFHECIYQRDWSLDGCGEKEHERVLLRNFGKVISVFLSLDEKYQQVIADITKRMGHGMDEFLHRDLVTIEDWDLYCHYVAGLVGLGLSGLFARSELESQWFATADEASNIMGLFLQKTNIIRDYLEDAHEGRVFWPKEIWSKHAEEITDFIDPKNSRSALACMNELITNALEHIPLCIDYMSRLKEPRVFNFCAIPQAMAIATLARCFNNHQVFEGVVKLRRGESVCV 765
            FYL LRGLD++EDD   P++ K  +L +F E +YQ  + + G G    E+ L++NF KV+ +FLSL +++  +I DITKRMG GM EFL + +VT+++WDLYCHYVAGLVG+GLS +FA S LE +WFA  D  SN MGLFLQKTNIIRDYLED +E R+FWP+++WS++   + +F D K   SAL C+N+LITNAL+H  + +DYMSRL+ P+V  FCAIPQ MAI TL+ C+NN+ VF GVVK+R+G+   +
Sbjct:   72 FYLALRGLDTVEDDTTVPIETKVPVLTTFCEGLYQPGFKVFGYGLNNDEKTLVQNFDKVVDIFLSLGDRFCPIIHDITKRMGIGMSEFLQKPVVTLQEWDLYCHYVAGLVGIGLSKMFASSGLEGEWFANCDTESNQMGLFLQKTNIIRDYLEDINENRIFWPRDVWSRYTLHLENFKDIKYKLSALHCLNDLITNALQHAVIALDYMSRLRNPKVIGFCAIPQVMAIGTLSACYNNYNVFTGVVKIRKGQRALI 326          
BLAST of mRNA_M-pyrifera_M_contig84822.19761.1 vs. uniprot
Match: A0A8J4URC2_9MYCE (Squalene synthase n=1 Tax=Polysphondylium violaceum TaxID=133409 RepID=A0A8J4URC2_9MYCE)

HSP 1 Score: 307 bits (787), Expect = 2.440e-100
Identity = 144/255 (56.47%), Postives = 185/255 (72.55%), Query Frame = 1
Query:    1 FYLVLRGLDSIEDDMAFPVDRKTALLHSFHECIYQRDWSLDGCGEKEHERVLLRNFGKVISVFLSLDEKYQQVIADITKRMGHGMDEFLHRDLVTIEDWDLYCHYVAGLVGLGLSGLFARSELESQWFATADEASNIMGLFLQKTNIIRDYLEDAHEGRVFWPKEIWSKHAEEITDFIDPKNSRSALACMNELITNALEHIPLCIDYMSRLKEPRVFNFCAIPQAMAIATLARCFNNHQVFEGVVKLRRGESVCV 765
            FYLVLRGLD++EDD    ++ K  +L  F E +YQ    + G G    E++L  NF KVI VFL L E +  +IADITKRM +GM EFL + ++T+ +WDLYCHYVAGLVG+GLS +F  S LE +WFATAD  SN MGLFLQKTNIIRDYLED +E R+FWP+++WS++   + +F + K   SAL C+N+LITNAL H  +C+DYMSRLK  +V NFCAIPQ MAI TL  C+NN+ VF GVVK+R+G+   +
Sbjct:   70 FYLVLRGLDTVEDDTTVAIETKLPVLTQFSEILYQPGHKVFGYGLNNDEKLLAENFDKVIDVFLKLGEGFCPIIADITKRMAYGMAEFLQKPVITLPEWDLYCHYVAGLVGIGLSRIFHASGLEGEWFATADHESNQMGLFLQKTNIIRDYLEDINENRIFWPRDVWSRYTLHLENFKNVKYQMSALHCLNDLITNALGHAVVCLDYMSRLKNEKVINFCAIPQVMAIGTLNACYNNYNVFTGVVKIRKGQRALI 324          
BLAST of mRNA_M-pyrifera_M_contig84822.19761.1 vs. uniprot
Match: FDFT_RAT (Squalene synthase n=25 Tax=Tetrapoda TaxID=32523 RepID=FDFT_RAT)

HSP 1 Score: 306 bits (785), Expect = 4.890e-100
Identity = 146/253 (57.71%), Postives = 187/253 (73.91%), Query Frame = 1
Query:    1 FYLVLRGLDSIEDDMAFPVDRKTALLHSFHECIYQRDWSLDGCGEKEHERVLLRNFGKVISVFLSLDEKYQQVIADITKRMGHGMDEFLHRDLVTIEDWDLYCHYVAGLVGLGLSGLFARSELESQWFATADEASNIMGLFLQKTNIIRDYLEDAHEGRVFWPKEIWSKHAEEITDFIDPKNSRSALACMNELITNALEHIPLCIDYMSRLKEPRVFNFCAIPQAMAIATLARCFNNHQVFEGVVKLRRGESV 759
            FYL+LR +D++EDDMA  V++K  LL +FH  +Y+ +W       KE  RV+L +F  +   F +L EKYQ VIADI  RMG GM EFL++D+ + +DWD YCHYVAGLVG+GLS LF+ SE E        E +N MGLFLQKTNIIRDYLED  EGR FWP+E+W K+ +++ DF+ P+N   A+ C+NELITNAL+HIP  I Y+SRL+   VFNFCAIPQ MAIATLA C+NNHQVF+GVVK+R+G++V
Sbjct:   72 FYLILRAMDTVEDDMAISVEKKIPLLRNFHTFLYEPEWRFTE--SKEKHRVVLEDFPTISLEFRNLAEKYQTVIADICHRMGCGMAEFLNKDVTSKQDWDKYCHYVAGLVGIGLSRLFSASEFEDPIVGEDTECANSMGLFLQKTNIIRDYLEDQQEGRQFWPQEVWGKYVKKLEDFVKPENVDVAVKCLNELITNALQHIPDVITYLSRLRNQSVFNFCAIPQVMAIATLAACYNNHQVFKGVVKIRKGQAV 322          
BLAST of mRNA_M-pyrifera_M_contig84822.19761.1 vs. uniprot
Match: D3BCX8_POLPP (Squalene synthase n=1 Tax=Polysphondylium pallidum (strain ATCC 26659 / Pp 5 / PN500) TaxID=670386 RepID=D3BCX8_POLPP)

HSP 1 Score: 307 bits (786), Expect = 4.990e-100
Identity = 145/267 (54.31%), Postives = 195/267 (73.03%), Query Frame = 1
Query:    1 FYLVLRGLDSIEDDMAFPVDRKTALLHSFHECIYQRDWSLDGCGEKEHERVLLRNFGKVISVFLSLDEKYQQVIADITKRMGHGMDEFLHRDLVTIEDWDLYCHYVAGLVGLGLSGLFARSELESQWFATADEASNIMGLFLQKTNIIRDYLEDAHEGRVFWPKEIWSKHAEEITDFIDPKNSRS------------ALACMNELITNALEHIPLCIDYMSRLKEPRVFNFCAIPQAMAIATLARCFNNHQVFEGVVKLRRGESVCV 765
            FYLVLRGLD++EDD    ++ K  +L  F E +YQ  + + G G    E++L+ NF KV+ V+LSL +++  +I DITKRM HGM EFL +++VT+ +WDLYCHYVAGLVG+GLS +FA S LES+WFA AD+ SN MGLFLQKTNIIRDYLED +E R+FWP+EIWSK+  ++ +F + ++++S            AL C+N+LITNAL H  + +DYMSRL+ P+V  FCAIPQ MAI TL+ C+NNH VF GVVK+R+G+   +
Sbjct:   70 FYLVLRGLDTVEDDTTVSLETKLPVLTKFAEGLYQPGFKVFGYGMNNDEKMLVENFDKVVDVYLSLGDRFCPIIHDITKRMAHGMSEFLQKEVVTLPEWDLYCHYVAGLVGIGLSKIFAASGLESEWFANADKESNDMGLFLQKTNIIRDYLEDINESRIFWPREIWSKYTAKLDNFKNIQHAQSVSLMLIVTMIVIALNCLNDLITNALSHAIVSLDYMSRLRNPKVIGFCAIPQVMAIGTLSACYNNHGVFTGVVKIRKGQRALI 336          
BLAST of mRNA_M-pyrifera_M_contig84822.19761.1 vs. uniprot
Match: A0A833ZLW8_9CHIR (Squalene synthase n=1 Tax=Phyllostomus discolor TaxID=89673 RepID=A0A833ZLW8_9CHIR)

HSP 1 Score: 303 bits (777), Expect = 1.060e-99
Identity = 144/253 (56.92%), Postives = 186/253 (73.52%), Query Frame = 1
Query:    1 FYLVLRGLDSIEDDMAFPVDRKTALLHSFHECIYQRDWSLDGCGEKEHERVLLRNFGKVISVFLSLDEKYQQVIADITKRMGHGMDEFLHRDLVTIEDWDLYCHYVAGLVGLGLSGLFARSELESQWFATADEASNIMGLFLQKTNIIRDYLEDAHEGRVFWPKEIWSKHAEEITDFIDPKNSRSALACMNELITNALEHIPLCIDYMSRLKEPRVFNFCAIPQAMAIATLARCFNNHQVFEGVVKLRRGESV 759
            FYL+LR LD++EDDM   +++K  LLH+FH  +Y+ DW       KE +R +L +F  +   F +L  KYQ VIADI ++MGHGM EFL + + + ++WD YCHYVAGLVG+GLS LF+ SELE         +SN MGLFLQKTNIIRDYLED  EGR FWP+E+WSK+ ++++DF  P+N   A+ C+NELITNAL HIP  I Y+SRL+   VFNFCAIPQ MAIATLA C+NN QVF+GVVK+R+G++V
Sbjct:   72 FYLILRALDTVEDDMTISIEKKIPLLHNFHTYLYEPDWRF--MESKEKDRQVLEDFPTISLEFRNLSVKYQTVIADICQKMGHGMAEFLDKHVTSEQEWDKYCHYVAGLVGIGLSRLFSASELEDPVVGEDTASSNSMGLFLQKTNIIRDYLEDQQEGREFWPQEVWSKYVKKLSDFAKPENMDLAVQCLNELITNALHHIPDVITYLSRLRNQSVFNFCAIPQVMAIATLAACYNNQQVFKGVVKIRKGQAV 322          
BLAST of mRNA_M-pyrifera_M_contig84822.19761.1 vs. uniprot
Match: FDFT_DICDI (Squalene synthase n=1 Tax=Dictyostelium discoideum TaxID=44689 RepID=FDFT_DICDI)

HSP 1 Score: 305 bits (780), Expect = 2.790e-99
Identity = 143/255 (56.08%), Postives = 187/255 (73.33%), Query Frame = 1
Query:    1 FYLVLRGLDSIEDDMAFPVDRKTALLHSFHECIYQRDWSLDGCGEKEHERVLLRNFGKVISVFLSLDEKYQQVIADITKRMGHGMDEFLHRDLVTIEDWDLYCHYVAGLVGLGLSGLFARSELESQWFATADEASNIMGLFLQKTNIIRDYLEDAHEGRVFWPKEIWSKHAEEITDFIDPKNSRSALACMNELITNALEHIPLCIDYMSRLKEPRVFNFCAIPQAMAIATLARCFNNHQVFEGVVKLRRGESVCV 765
            FYLVLRGLD+IEDD    ++ K  +L SF E +YQ  + + G G    E+ L+ NF KV+ VFL L + Y  +I DIT+RM +GM EFL + +VT+ +WDLYCHYVAGLVG+GLS +F  S LES+WFATAD+ SN MGLFLQKTNIIRDYLED +E R+FWP+++W+++   + +F + K    AL C+N+LITNAL H  + +DYMSRLK P+V NFCAIPQ MAI TL  C+NN+ VF GVVK+R+G+   +
Sbjct:   70 FYLVLRGLDTIEDDTTVELNTKLPVLTSFSEGLYQPGYKVFGYGMNNDEKNLVENFDKVVDVFLGLGDGYCTIIHDITRRMANGMSEFLQKSVVTLPEWDLYCHYVAGLVGIGLSKIFHASGLESEWFATADDESNQMGLFLQKTNIIRDYLEDINEKRIFWPRDVWARYTLHLENFKEAKYQIPALHCLNDLITNALSHALIALDYMSRLKNPQVINFCAIPQVMAIGTLNACYNNYNVFTGVVKIRKGQRALI 324          
BLAST of mRNA_M-pyrifera_M_contig84822.19761.1 vs. uniprot
Match: A0A250XGK7_9CHLO (Squalene synthase n=1 Tax=Chlamydomonas eustigma TaxID=1157962 RepID=A0A250XGK7_9CHLO)

HSP 1 Score: 306 bits (783), Expect = 3.100e-99
Identity = 148/258 (57.36%), Postives = 196/258 (75.97%), Query Frame = 1
Query:    1 FYLVLRGLDSIEDDMAFPVDRKTALLHSFHECIYQRDWSLDGCGEKEHERVLLRNFGKVISVFLSLDEKYQQVIADITKRMGHGMDEFLHRDLVTIEDWDLYCHYVAGLVGLGLSGLFARSELESQWFATADEASNIMGLFLQKTNIIRDYLEDAHEG---RVFWPKEIWSKHAEEITDFIDPKNSRSALACMNELITNALEHIPLCIDYMSRLKEPRVFNFCAIPQAMAIATLARCFNNHQVFEGVVKLRRGESVCV 765
            FYLVLRGLD++EDDMA   D K  +L  FHE IYQ+D+S++ CG K H + L++ FGKVI+VFLSLD+ +Q VIADITK+MG GM+EF+ ++++T+ D++LYCHYVAGLVG+GLS LFA S LE    + A++ +N MGLFLQKTNIIRDYLED  E    R+FWPK IW ++ + + DF +  N   A+ C+N +I +AL H+P CI YM +L++ +VF FCAIPQ MA  TLA C+NN +VFEGVVK+RRG++ CV
Sbjct:   68 FYLVLRGLDTVEDDMALDNDIKLPMLLVFHEKIYQKDFSME-CGYK-HYKKLMKEFGKVINVFLSLDKVFQIVIADITKKMGAGMNEFIQKEVITVADYNLYCHYVAGLVGIGLSQLFASSSLEDSAVSKAEDLANHMGLFLQKTNIIRDYLEDIIEEPAPRMFWPKAIWGQYGKSLEDFKESSNREGAVKCLNHMIVDALSHLPFCIQYMKQLRDRKVFRFCAIPQIMAAGTLAVCYNNGKVFEGVVKMRRGQTACV 323          
BLAST of mRNA_M-pyrifera_M_contig84822.19761.1 vs. uniprot
Match: A0A150H3G5_GONPE (Squalene synthase n=1 Tax=Gonium pectorale TaxID=33097 RepID=A0A150H3G5_GONPE)

HSP 1 Score: 305 bits (781), Expect = 6.790e-99
Identity = 149/258 (57.75%), Postives = 192/258 (74.42%), Query Frame = 1
Query:    1 FYLVLRGLDSIEDDMAFPVDRKTALLHSFHECIYQRDWSLDGCGEKEHERVLLRNFGKVISVFLSLDEKYQQVIADITKRMGHGMDEFLHRDLVTIEDWDLYCHYVAGLVGLGLSGLFARSELESQWFATADEASNIMGLFLQKTNIIRDYLEDAHEG---RVFWPKEIWSKHAEEITDFIDPKNSRSALACMNELITNALEHIPLCIDYMSRLKEPRVFNFCAIPQAMAIATLARCFNNHQVFEGVVKLRRGESVCV 765
            FYLVLRGLD++EDDMA  VD K   L  FHE IY R +++  CG   ++R L+  FG V+SVFL L+  +Q+VIADIT+RMGHGM +F+ +++VT+ D+DLYCHYVAGLVG+GLS LFA S LES   A A++ SN MGLFLQKTNIIRDYLED  E    R+FWP+EIW ++   + DF +P N + A+ C+N +IT+AL H+P C+ YM +L+   VF FCAIPQ MAI TLA C+NN ++FEGVVK+RRGE+  V
Sbjct:   68 FYLVLRGLDTVEDDMALQVDFKVPELKRFHERIYDRGFTM-ACGYNHYKR-LMAQFGTVVSVFLQLEPAHQRVIADITRRMGHGMADFIEKEVVTVADYDLYCHYVAGLVGIGLSQLFAASGLESPGMAVAEDLSNHMGLFLQKTNIIRDYLEDIMEEPAPRMFWPREIWGRYGATLADFKEPANRQRAVQCLNHMITDALRHVPYCMQYMEQLRHVMVFRFCAIPQIMAIGTLAICYNNGKLFEGVVKMRRGETATV 323          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig84822.19761.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
F4PSX7_CAVFA7.310e-10359.22Squalene synthase n=1 Tax=Cavenderia fasciculata (... [more]
F0Z8C6_DICPU4.540e-10257.25Squalene synthase n=1 Tax=Dictyostelium purpureum ... [more]
A0A152A2W2_9MYCE1.600e-10155.29Squalene synthase n=1 Tax=Tieghemostelium lacteum ... [more]
A0A8J4URC2_9MYCE2.440e-10056.47Squalene synthase n=1 Tax=Polysphondylium violaceu... [more]
FDFT_RAT4.890e-10057.71Squalene synthase n=25 Tax=Tetrapoda TaxID=32523 R... [more]
D3BCX8_POLPP4.990e-10054.31Squalene synthase n=1 Tax=Polysphondylium pallidum... [more]
A0A833ZLW8_9CHIR1.060e-9956.92Squalene synthase n=1 Tax=Phyllostomus discolor Ta... [more]
FDFT_DICDI2.790e-9956.08Squalene synthase n=1 Tax=Dictyostelium discoideum... [more]
A0A250XGK7_9CHLO3.100e-9957.36Squalene synthase n=1 Tax=Chlamydomonas eustigma T... [more]
A0A150H3G5_GONPE6.790e-9957.75Squalene synthase n=1 Tax=Gonium pectorale TaxID=3... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig84822contigM-pyrifera_M_contig84822:3..870 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score315.1
Seed ortholog evalue3e-83
Seed eggNOG ortholog5786.XP_003283681.1
Preferred nameFDFT1
KEGG rclassRC00362,RC00796,RC02839
KEGG koko:K00801
KEGG ReactionR00702,R02872,R06223
KEGG Pathwayko00100,ko00909,ko01100,ko01110,ko01130,map00100,map00909,map01100,map01110,map01130
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003824,GO:0004310,GO:0004311,GO:0004659,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005741,GO:0005783,GO:0005789,GO:0005886,GO:0006066,GO:0006629,GO:0006644,GO:0006694,GO:0006695,GO:0006696,GO:0006720,GO:0006721,GO:0006793,GO:0006796,GO:0008150,GO:0008152,GO:0008202,GO:0008203,GO:0008204,GO:0008610,GO:0009058,GO:0009889,GO:0009987,GO:0012505,GO:0016020,GO:0016021,GO:0016125,GO:0016126,GO:0016128,GO:0016129,GO:0016740,GO:0016765,GO:0019216,GO:0019218,GO:0019222,GO:0019637,GO:0019867,GO:0031090,GO:0031224,GO:0031966,GO:0031967,GO:0031968,GO:0031975,GO:0031984,GO:0042175,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044107,GO:0044108,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044281,GO:0044283,GO:0044422,GO:0044424,GO:0044425,GO:0044429,GO:0044432,GO:0044444,GO:0044446,GO:0044464,GO:0045338,GO:0045540,GO:0046165,GO:0046890,GO:0050789,GO:0050810,GO:0051996,GO:0062012,GO:0065007,GO:0071704,GO:0071944,GO:0080090,GO:0090181,GO:0097384,GO:0098588,GO:0098805,GO:0098827,GO:0106118,GO:1901360,GO:1901362,GO:1901576,GO:1901615,GO:1901617,GO:1902652,GO:1902653,GO:1902930
EggNOG free text desc.Squalene/phytoene synthase
EggNOG OGs3XAPK@554915,COG1562@1,KOG1459@2759
EC2.5.1.21
COG Functional cat.H
Best tax levelAmoebozoa
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01006
Exons3
Model size765
Cds size765
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig84822.19761.1prot_M-pyrifera_M_contig84822.19761.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig84822 3..870 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816755.0307727-CDS-M-pyrifera_M_contig84822:2..1291622816755.0307727-CDS-M-pyrifera_M_contig84822:2..129Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig84822 3..129 +
1692278158.9262266-CDS-M-pyrifera_M_contig84822:2..1291692278158.9262266-CDS-M-pyrifera_M_contig84822:2..129Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig84822 3..129 +
1622816755.0431397-CDS-M-pyrifera_M_contig84822:182..2611622816755.0431397-CDS-M-pyrifera_M_contig84822:182..261Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig84822 183..261 +
1692278158.9372766-CDS-M-pyrifera_M_contig84822:182..2611692278158.9372766-CDS-M-pyrifera_M_contig84822:182..261Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig84822 183..261 +
1622816755.054615-CDS-M-pyrifera_M_contig84822:311..8701622816755.054615-CDS-M-pyrifera_M_contig84822:311..870Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig84822 312..870 +
1692278158.945788-CDS-M-pyrifera_M_contig84822:311..8701692278158.945788-CDS-M-pyrifera_M_contig84822:311..870Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig84822 312..870 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig84822.19761.1

>prot_M-pyrifera_M_contig84822.19761.1 ID=prot_M-pyrifera_M_contig84822.19761.1|Name=mRNA_M-pyrifera_M_contig84822.19761.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=255bp
FYLVLRGLDSIEDDMAFPVDRKTALLHSFHECIYQRDWSLDGCGEKEHER
VLLRNFGKVISVFLSLDEKYQQVIADITKRMGHGMDEFLHRDLVTIEDWD
LYCHYVAGLVGLGLSGLFARSELESQWFATADEASNIMGLFLQKTNIIRD
YLEDAHEGRVFWPKEIWSKHAEEITDFIDPKNSRSALACMNELITNALEH
IPLCIDYMSRLKEPRVFNFCAIPQAMAIATLARCFNNHQVFEGVVKLRRG
ESVCV
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mRNA from alignment at M-pyrifera_M_contig84822:3..870+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig84822.19761.1 ID=mRNA_M-pyrifera_M_contig84822.19761.1|Name=mRNA_M-pyrifera_M_contig84822.19761.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=868bp|location=Sequence derived from alignment at M-pyrifera_M_contig84822:3..870+ (Macrocystis pyrifera P11B4 male)
TTCTACCTCGTGCTCCGCGGCCTGGACTCCATCGAGGACGACATGGCCTT CCCTGTGGACCGCAAGACTGCGCTTTTGCACTCGTTCCACGAGTGCATCT ACCAGCGCGACTGGTCGCTCGACGGCTGTACGGCTCTGCACGAAGCGGCG CGCTCCTCCATAGCTAACTTTGGATTCTAGGCGGCGAGAAGGAGCACGAG CGGGTGCTGTTGCGCAACTTTGGCAAAGTGATCTCTGTATTTCTGTCCCT CGATGAGAAGTACGTGCGACAGCCGCAGGACGGCGGGACACCACTGACAG CTAGTGCAGGTATCAGCAAGTGATCGCAGACATCACGAAGCGCATGGGGC ACGGTATGGACGAGTTCCTGCACCGCGACTTGGTCACCATCGAGGACTGG GATCTCTACTGCCACTACGTTGCCGGCCTCGTTGGCCTGGGCCTCAGCGG GCTGTTCGCCCGCTCAGAGTTGGAGAGCCAGTGGTTCGCCACAGCAGACG AAGCCTCCAATATCATGGGCCTTTTCTTGCAAAAGACGAACATCATCCGC GACTACCTGGAGGATGCGCACGAGGGCCGCGTGTTCTGGCCGAAGGAGAT TTGGAGCAAGCACGCCGAGGAGATCACCGACTTCATTGACCCCAAGAACT CTCGCTCTGCGCTCGCGTGCATGAACGAGCTCATCACGAACGCCCTCGAG CACATCCCGCTCTGCATCGACTACATGTCCCGTTTGAAGGAGCCGCGCGT ATTCAACTTCTGCGCGATCCCACAAGCAATGGCCATCGCCACCCTGGCAC GGTGCTTCAACAACCACCAGGTATTCGAGGGTGTGGTCAAGCTCCGCCGT GGAGAGAGCGTTTGCGTA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig84822:3..870+

>mRNA_M-pyrifera_M_contig84822.19761.1 ID=mRNA_M-pyrifera_M_contig84822.19761.1|Name=mRNA_M-pyrifera_M_contig84822.19761.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1530bp|location=Sequence derived from alignment at M-pyrifera_M_contig84822:3..870+ (Macrocystis pyrifera P11B4 male)
TTCTACCTCGTGCTCCGCGGCCTGGACTCCATCGAGGACGACATGGCCTT
CCCTGTGGACCGCAAGACTGCGCTTTTGCACTCGTTCCACGAGTGCATCT
ACCAGCGCGACTGGTCGCTCGACGGCTTTCTACCTCGTGCTCCGCGGCCT
GGACTCCATCGAGGACGACATGGCCTTCCCTGTGGACCGCAAGACTGCGC
TTTTGCACTCGTTCCACGAGTGCATCTACCAGCGCGACTGGTCGCTCGAC
GGCTGCGGCGAGAAGGAGCACGAGCGGGTGCTGTTGCGCAACTTTGGCAA
AGTGATCTCTGTATTTCTGTCCCTCGATGAGAAGCGGCGAGAAGGAGCAC
GAGCGGGTGCTGTTGCGCAACTTTGGCAAAGTGATCTCTGTATTTCTGTC
CCTCGATGAGAAGTATCAGCAAGTGATCGCAGACATCACGAAGCGCATGG
GGCACGGTATGGACGAGTTCCTGCACCGCGACTTGGTCACCATCGAGGAC
TGGGATCTCTACTGCCACTACGTTGCCGGCCTCGTTGGCCTGGGCCTCAG
CGGGCTGTTCGCCCGCTCAGAGTTGGAGAGCCAGTGGTTCGCCACAGCAG
ACGAAGCCTCCAATATCATGGGCCTTTTCTTGCAAAAGACGAACATCATC
CGCGACTACCTGGAGGATGCGCACGAGGGCCGCGTGTTCTGGCCGAAGGA
GATTTGGAGCAAGCACGCCGAGGAGATCACCGACTTCATTGACCCCAAGA
ACTCTCGCTCTGCGCTCGCGTGCATGAACGAGCTCATCACGAACGCCCTC
GAGCACATCCCGCTCTGCATCGACTACATGTCCCGTTTGAAGGAGCCGCG
CGTATTCAACTTCTGCGCGATCCCACAAGCAATGGCCATCGCCACCCTGG
CACGGTGCTTCAACAACCACCAGGTATTCGAGGGTGTGGTCAAGCTCCGC
CGTGGAGAGAGCGTTTGCGTAGTATCAGCAAGTGATCGCAGACATCACGA
AGCGCATGGGGCACGGTATGGACGAGTTCCTGCACCGCGACTTGGTCACC
ATCGAGGACTGGGATCTCTACTGCCACTACGTTGCCGGCCTCGTTGGCCT
GGGCCTCAGCGGGCTGTTCGCCCGCTCAGAGTTGGAGAGCCAGTGGTTCG
CCACAGCAGACGAAGCCTCCAATATCATGGGCCTTTTCTTGCAAAAGACG
AACATCATCCGCGACTACCTGGAGGATGCGCACGAGGGCCGCGTGTTCTG
GCCGAAGGAGATTTGGAGCAAGCACGCCGAGGAGATCACCGACTTCATTG
ACCCCAAGAACTCTCGCTCTGCGCTCGCGTGCATGAACGAGCTCATCACG
AACGCCCTCGAGCACATCCCGCTCTGCATCGACTACATGTCCCGTTTGAA
GGAGCCGCGCGTATTCAACTTCTGCGCGATCCCACAAGCAATGGCCATCG
CCACCCTGGCACGGTGCTTCAACAACCACCAGGTATTCGAGGGTGTGGTC
AAGCTCCGCCGTGGAGAGAGCGTTTGCGTA
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