prot_M-pyrifera_M_contig109418.1975.1 (polypeptide) Macrocystis pyrifera P11B4 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_M-pyrifera_M_contig109418.1975.1
Unique Nameprot_M-pyrifera_M_contig109418.1975.1
Typepolypeptide
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Sequence length120
Homology
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BLAST of mRNA_M-pyrifera_M_contig109418.1975.1 vs. uniprot
Match: A0A849RFY1_9BACT (Uncharacterized protein n=1 Tax=Nitrospira sp. TaxID=70125 RepID=A0A849RFY1_9BACT)

HSP 1 Score: 58.9 bits (141), Expect = 9.190e-8
Identity = 34/74 (45.95%), Postives = 42/74 (56.76%), Query Frame = 0 
Query:   52 NAAFGPTAEFPFRGPVVPAAEARTAGALWIASSSYAEDVYIPAADIFPTRLGAALERP-----VLNASRGGLTI 120
            N+ FGPT  FPFR  +VP          W+ASSS+AED+Y+P   IFP  L   L+       VLNASR G+ I
Sbjct:   19 NSEFGPTPAFPFRSRIVPLERESGNHRYWVASSSHAEDIYLPPPMIFPNVLERFLKEGKINSVVLNASRAGIDI 92
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig109418.1975.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A849RFY1_9BACT9.190e-845.95Uncharacterized protein n=1 Tax=Nitrospira sp. Tax... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0 of Macrocystis pyrifera male
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 8..21
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..29
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 30..120
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..7
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 22..29
NoneNo IPR availableSIGNALP_EUKSignalP-noTMSignalP-noTMcoord: 1..29
score: 0.863
NoneNo IPR availableTMHMMTMhelixcoord: 5..27

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig109418contigM-pyrifera_M_contig109418:240..599 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Macrocystis pyrifera male2022-09-29
Diamond blastp: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-16
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig109418.1975.1mRNA_M-pyrifera_M_contig109418.1975.1Macrocystis pyrifera P11B4 malemRNAM-pyrifera_M_contig109418 240..599 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_M-pyrifera_M_contig109418.1975.1 ID=prot_M-pyrifera_M_contig109418.1975.1|Name=mRNA_M-pyrifera_M_contig109418.1975.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=120bp
MLRRFAPLAPLLWAALFLLVLELALEVRAAKRGHRAELLGIEPGVEEPAD
VNAAFGPTAEFPFRGPVVPAAEARTAGALWIASSSYAEDVYIPAADIFPT
RLGAALERPVLNASRGGLTI
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