mRNA_M-pyrifera_M_contig109418.1975.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig109418.1975.1
Unique NamemRNA_M-pyrifera_M_contig109418.1975.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig109418.1975.1 vs. uniprot
Match: A0A849RFY1_9BACT (Uncharacterized protein n=1 Tax=Nitrospira sp. TaxID=70125 RepID=A0A849RFY1_9BACT)

HSP 1 Score: 58.9 bits (141), Expect = 9.190e-8
Identity = 34/74 (45.95%), Postives = 42/74 (56.76%), Query Frame = 1 
Query:  154 NAAFGPTAEFPFRGPVVPAAEARTAGALWIASSSYAEDVYIPAADIFPTRLGAALERP-----VLNASRGGLTI 360
            N+ FGPT  FPFR  +VP          W+ASSS+AED+Y+P   IFP  L   L+       VLNASR G+ I
Sbjct:   19 NSEFGPTPAFPFRSRIVPLERESGNHRYWVASSSHAEDIYLPPPMIFPNVLERFLKEGKINSVVLNASRAGIDI 92
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig109418.1975.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A849RFY1_9BACT9.190e-845.95Uncharacterized protein n=1 Tax=Nitrospira sp. Tax... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig109418contigM-pyrifera_M_contig109418:240..599 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons1
Model size360
Cds size360
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815604.7930322-CDS-M-pyrifera_M_contig109418:239..5991622815604.7930322-CDS-M-pyrifera_M_contig109418:239..599Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig109418 240..599 +
1692277483.8046176-CDS-M-pyrifera_M_contig109418:239..5991692277483.8046176-CDS-M-pyrifera_M_contig109418:239..599Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig109418 240..599 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig109418.1975.1prot_M-pyrifera_M_contig109418.1975.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig109418 240..599 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig109418.1975.1

>prot_M-pyrifera_M_contig109418.1975.1 ID=prot_M-pyrifera_M_contig109418.1975.1|Name=mRNA_M-pyrifera_M_contig109418.1975.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=120bp
MLRRFAPLAPLLWAALFLLVLELALEVRAAKRGHRAELLGIEPGVEEPAD
VNAAFGPTAEFPFRGPVVPAAEARTAGALWIASSSYAEDVYIPAADIFPT
RLGAALERPVLNASRGGLTI
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mRNA from alignment at M-pyrifera_M_contig109418:240..599+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig109418.1975.1 ID=mRNA_M-pyrifera_M_contig109418.1975.1|Name=mRNA_M-pyrifera_M_contig109418.1975.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=360bp|location=Sequence derived from alignment at M-pyrifera_M_contig109418:240..599+ (Macrocystis pyrifera P11B4 male)
ATGCTCCGCCGCTTCGCCCCCCTCGCGCCGCTCCTCTGGGCCGCGTTGTT
CCTGCTCGTCCTCGAGCTCGCGCTCGAGGTGCGCGCCGCCAAGCGCGGCC
ACCGTGCCGAACTCCTGGGCATCGAGCCGGGCGTCGAGGAACCCGCGGAC
GTGAACGCCGCCTTTGGACCGACCGCCGAGTTCCCGTTCCGCGGTCCGGT
CGTCCCCGCCGCCGAAGCGCGCACCGCCGGCGCCCTCTGGATCGCCTCGT
CCTCCTACGCGGAAGACGTCTACATCCCCGCGGCCGACATCTTCCCGACC
CGCCTCGGCGCCGCCCTCGAGCGCCCGGTGCTGAACGCGAGCCGCGGCGG
GCTGACCATC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig109418:240..599+

>mRNA_M-pyrifera_M_contig109418.1975.1 ID=mRNA_M-pyrifera_M_contig109418.1975.1|Name=mRNA_M-pyrifera_M_contig109418.1975.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=720bp|location=Sequence derived from alignment at M-pyrifera_M_contig109418:240..599+ (Macrocystis pyrifera P11B4 male)
ATGCTCCGCCGCTTCGCCCCCCTCGCGCCGCTCCTCTGGGCCGCGTTGTT
CCTGCTCGTCCTCGAGCTCGCGCTCGAGGTGCGCGCCGCCAAGCGCGGCC
ACCGTGCCGAACTCCTGGGCATCGAGCCGGGCGTCGAGGAACCCGCGGAC
GTGAACGCCGCCTTTGGACCGACCGCCGAGTTCCCGTTCCGCGGTCCGGT
CGTCCCCGCCGCCGAAGCGCGCACCGCCGGCGCCCTCTGGATCGCCTCGT
CCTCCTACGCGGAAGACGTCTACATCCCCGCGGCCGACATCTTCCCGACC
CGCCTCGGCGCCGCCCTCGAGCGCCCGGTGCTGAACGCGAGCCGCGGCGG
GCTGACCATCATGCTCCGCCGCTTCGCCCCCCTCGCGCCGCTCCTCTGGG
CCGCGTTGTTCCTGCTCGTCCTCGAGCTCGCGCTCGAGGTGCGCGCCGCC
AAGCGCGGCCACCGTGCCGAACTCCTGGGCATCGAGCCGGGCGTCGAGGA
ACCCGCGGACGTGAACGCCGCCTTTGGACCGACCGCCGAGTTCCCGTTCC
GCGGTCCGGTCGTCCCCGCCGCCGAAGCGCGCACCGCCGGCGCCCTCTGG
ATCGCCTCGTCCTCCTACGCGGAAGACGTCTACATCCCCGCGGCCGACAT
CTTCCCGACCCGCCTCGGCGCCGCCCTCGAGCGCCCGGTGCTGAACGCGA
GCCGCGGCGGGCTGACCATC
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