mRNA_M-pyrifera_M_contig84712.19741.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig84712.19741.1
Unique NamemRNA_M-pyrifera_M_contig84712.19741.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig84712.19741.1 vs. uniprot
Match: A0A1J3IDQ4_NOCCA (Polyubiquitin (Fragment) n=1 Tax=Noccaea caerulescens TaxID=107243 RepID=A0A1J3IDQ4_NOCCA)

HSP 1 Score: 60.5 bits (145), Expect = 7.610e-10
Identity = 36/96 (37.50%), Postives = 60/96 (62.50%), Query Frame = 1
Query:    1 RLVEVRAHATVGEVREVVRDLTGIGEIDGKILAGFAG-----DACVEECGLFDGCTVEVGCRMRGGVELFVKTLTGKTISVEVDPTATIVRMKEKI 273
            R VEV    T+ +++E +RD  GI   + +++  +AG     D  V +  L    T+ +  R+RGG+++FVKTLTGKTI++EV+ + +I  +K+KI
Sbjct:   17 RTVEVNTTDTIRQIKEQIRDKEGINPDEQRLI--YAGKNLDDDKTVSDYNLSADATLHLVLRVRGGMQIFVKTLTGKTITLEVEGSDSIQNVKQKI 110          
BLAST of mRNA_M-pyrifera_M_contig84712.19741.1 vs. uniprot
Match: A0A2R8ZV56_PANPA (Uncharacterized protein n=1 Tax=Pan paniscus TaxID=9597 RepID=A0A2R8ZV56_PANPA)

HSP 1 Score: 59.3 bits (142), Expect = 4.070e-9
Identity = 37/94 (39.36%), Postives = 56/94 (59.57%), Query Frame = 1
Query:    7 VEVRAHATVGEVREVVRDLTGIGEIDGKILAGFAGDACVEECGLFD-----GCTVEVGCRMRGGVELFVKTLTGKTISVEVDPTATIVRMKEKI 273
            +EV   AT+  V+  ++D  G      K++  FAG    + C L D       T+ +  R+RGG+++FVKTLTGKTI++EV+P+ TI  +K KI
Sbjct:   15 LEVEPSATIENVKAKIQDKEGNPHDQQKLI--FAGKQLEDGCSLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKI 106          
BLAST of mRNA_M-pyrifera_M_contig84712.19741.1 vs. uniprot
Match: A0A6A4SGQ4_SCOMX (Uncharacterized protein n=1 Tax=Scophthalmus maximus TaxID=52904 RepID=A0A6A4SGQ4_SCOMX)

HSP 1 Score: 58.9 bits (141), Expect = 7.190e-9
Identity = 38/94 (40.43%), Postives = 57/94 (60.64%), Query Frame = 1
Query:    7 VEVRAHATVGEVREVVRDLTGIGEIDGKILAGFAGDACVEECGLFD-----GCTVEVGCRMRGGVELFVKTLTGKTISVEVDPTATIVRMKEKI 273
            +EV A  T+  VR  ++D   I     +++  FAG   VE   L+D       T+ +  R+RGG+++FVKTLTGKTI++EV+P+ TI  +K KI
Sbjct:   15 LEVEASDTIKNVRAKIQDKEAIPPDQQRLI--FAGKQLVEGRTLYDYNIQKKSTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKI 106          
BLAST of mRNA_M-pyrifera_M_contig84712.19741.1 vs. uniprot
Match: UPI00174DE9BE (polyubiquitin-like n=1 Tax=Myotis myotis TaxID=51298 RepID=UPI00174DE9BE)

HSP 1 Score: 57.8 bits (138), Expect = 2.000e-8
Identity = 37/94 (39.36%), Postives = 56/94 (59.57%), Query Frame = 1
Query:    7 VEVRAHATVGEVREVVRDLTGIGEIDGKILAGFAGDACVEECGLFD-----GCTVEVGCRMRGGVELFVKTLTGKTISVEVDPTATIVRMKEKI 273
            +EV    T+  V+  ++D  GI     +++  FAG    E C L D       T+ +  R+RGG+++FVKTLTGKTI++EV+P+ TI  +K KI
Sbjct:   15 LEVEPSDTIENVKAKIQDKEGIPPDQQRLI--FAGKQLEEGCILSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKI 106          
BLAST of mRNA_M-pyrifera_M_contig84712.19741.1 vs. uniprot
Match: A0A814F564_ADIRI (Hypothetical protein n=3 Tax=Adineta ricciae TaxID=249248 RepID=A0A814F564_ADIRI)

HSP 1 Score: 59.7 bits (143), Expect = 2.170e-8
Identity = 32/87 (36.78%), Postives = 56/87 (64.37%), Query Frame = 1
Query:   28 TVGEVREVVRDLTGIGEIDGKILAGFAGDACVEECGLFD-----GCTVEVGCRMRGGVELFVKTLTGKTISVEVDPTATIVRMKEKI 273
            T+G+++++V D  G+     + +  FAG    ++  L D     G T+ +  R+RGG+ +FVKTLTGKT+++E+DP+ +I  +K+KI
Sbjct:   22 TIGQIKDIVHDREGVPSDQQRFI--FAGKQLEDKRTLTDYNILNGYTIHLVLRLRGGMMIFVKTLTGKTLTLEIDPSESIENIKDKI 106          
BLAST of mRNA_M-pyrifera_M_contig84712.19741.1 vs. uniprot
Match: A0A0K9NNZ5_ZOSMR (Polyubiquitin n=1 Tax=Zostera marina TaxID=29655 RepID=A0A0K9NNZ5_ZOSMR)

HSP 1 Score: 59.3 bits (142), Expect = 2.890e-8
Identity = 35/94 (37.23%), Postives = 57/94 (60.64%), Query Frame = 1
Query:    7 VEVRAHATVGEVREVVRDLTGIGEIDGKILAGFAGDACVEECGLFD-----GCTVEVGCRMRGGVELFVKTLTGKTISVEVDPTATIVRMKEKI 273
            +EV+   TV  V+  ++D  GI     +++  FAG    ++C L D       T+ +  R+RGG+++FVKTLTGKTI++EV+ + T+  +K KI
Sbjct:   22 LEVKTSDTVANVKSKIQDKEGIPPDQQRLI--FAGKQLEDDCILADYNIQKESTIHLVLRLRGGMQIFVKTLTGKTITLEVETSDTVANIKSKI 113          
BLAST of mRNA_M-pyrifera_M_contig84712.19741.1 vs. uniprot
Match: A0A815L2C5_9BILA (Hypothetical protein n=1 Tax=Rotaria sordida TaxID=392033 RepID=A0A815L2C5_9BILA)

HSP 1 Score: 58.5 bits (140), Expect = 4.280e-8
Identity = 33/94 (35.11%), Postives = 57/94 (60.64%), Query Frame = 1
Query:    7 VEVRAHATVGEVREVVRDLTGIGEIDGKILAGFAG-----DACVEECGLFDGCTVEVGCRMRGGVELFVKTLTGKTISVEVDPTATIVRMKEKI 273
            +EV +  T+  V+  ++D  GI     +++  FAG     D  + +  +    T+ +  R+RGG+++F+KTLTGKTI++EV+P+ TI  +K KI
Sbjct:   15 LEVESSDTINNVKVKIQDKEGIAPDQQRLI--FAGKQLEDDRTLSDYNILQESTLHLVLRLRGGMQIFIKTLTGKTITIEVEPSETIESVKAKI 106          
BLAST of mRNA_M-pyrifera_M_contig84712.19741.1 vs. uniprot
Match: A0A0P5Q2F0_9CRUS (Polyubiquitin-C-like protein (Fragment) n=1 Tax=Daphnia magna TaxID=35525 RepID=A0A0P5Q2F0_9CRUS)

HSP 1 Score: 56.6 bits (135), Expect = 8.640e-8
Identity = 34/94 (36.17%), Postives = 57/94 (60.64%), Query Frame = 1
Query:    7 VEVRAHATVGEVREVVRDLTGIGEIDGKILAGFAGDAC-----VEECGLFDGCTVEVGCRMRGGVELFVKTLTGKTISVEVDPTATIVRMKEKI 273
            +EV    T+  V+  ++D  GI     +++  FAG        + +  + +G T+ +  R+RGG+++FVKTLTGKTI++EV+P+ TI  +K KI
Sbjct:   15 LEVEPSDTIENVKAKIQDKEGIPPDQQRLI--FAGKQLEDGHTLSDYNISEGSTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKI 106          
BLAST of mRNA_M-pyrifera_M_contig84712.19741.1 vs. uniprot
Match: A0A819JIF4_9BILA (Hypothetical protein n=7 Tax=Rotaria sordida TaxID=392033 RepID=A0A819JIF4_9BILA)

HSP 1 Score: 57.8 bits (138), Expect = 1.030e-7
Identity = 33/94 (35.11%), Postives = 57/94 (60.64%), Query Frame = 1
Query:    7 VEVRAHATVGEVREVVRDLTGIGEIDGKILAGFAG-----DACVEECGLFDGCTVEVGCRMRGGVELFVKTLTGKTISVEVDPTATIVRMKEKI 273
            +EV +  T+  V+  ++D  GI     +++  FAG     D  + +  +    T+ +  R+RGG+++F+KTLTGKTI++EV+P+ TI  +K KI
Sbjct:   15 LEVESSDTINNVKVKIQDKEGIAPDQQRLI--FAGKQLEDDRTLGDYNILQESTLHLVLRLRGGMQIFIKTLTGKTITIEVEPSETIESVKAKI 106          
BLAST of mRNA_M-pyrifera_M_contig84712.19741.1 vs. uniprot
Match: A0A819WFV2_9BILA (Hypothetical protein (Fragment) n=1 Tax=Rotaria magnacalcarata TaxID=392030 RepID=A0A819WFV2_9BILA)

HSP 1 Score: 55.1 bits (131), Expect = 1.050e-7
Identity = 36/94 (38.30%), Postives = 56/94 (59.57%), Query Frame = 1
Query:    7 VEVRAHATVGEVREVVRDLTGIGEIDGKILAGFAGDACVEECGLFD-----GCTVEVGCRMRGGVELFVKTLTGKTISVEVDPTATIVRMKEKI 273
            +EV    T+  V+  ++D  GI     +++  FAG    +   L D       T+ +  R+RGG+++FVKTLTGKTI++EV+PT TI ++K KI
Sbjct:   15 LEVEPSDTIENVKAKIQDKEGIPPDQQRLI--FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPTDTIEKVKAKI 106          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig84712.19741.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A1J3IDQ4_NOCCA7.610e-1037.50Polyubiquitin (Fragment) n=1 Tax=Noccaea caerulesc... [more]
A0A2R8ZV56_PANPA4.070e-939.36Uncharacterized protein n=1 Tax=Pan paniscus TaxID... [more]
A0A6A4SGQ4_SCOMX7.190e-940.43Uncharacterized protein n=1 Tax=Scophthalmus maxim... [more]
UPI00174DE9BE2.000e-839.36polyubiquitin-like n=1 Tax=Myotis myotis TaxID=512... [more]
A0A814F564_ADIRI2.170e-836.78Hypothetical protein n=3 Tax=Adineta ricciae TaxID... [more]
A0A0K9NNZ5_ZOSMR2.890e-837.23Polyubiquitin n=1 Tax=Zostera marina TaxID=29655 R... [more]
A0A815L2C5_9BILA4.280e-835.11Hypothetical protein n=1 Tax=Rotaria sordida TaxID... [more]
A0A0P5Q2F0_9CRUS8.640e-836.17Polyubiquitin-C-like protein (Fragment) n=1 Tax=Da... [more]
A0A819JIF4_9BILA1.030e-735.11Hypothetical protein n=7 Tax=Rotaria sordida TaxID... [more]
A0A819WFV2_9BILA1.050e-738.30Hypothetical protein (Fragment) n=1 Tax=Rotaria ma... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig84712contigM-pyrifera_M_contig84712:14..286 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size273
Cds size273
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816754.1110084-CDS-M-pyrifera_M_contig84712:13..2861622816754.1110084-CDS-M-pyrifera_M_contig84712:13..286Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig84712 14..286 -
1692278158.4039395-CDS-M-pyrifera_M_contig84712:13..2861692278158.4039395-CDS-M-pyrifera_M_contig84712:13..286Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig84712 14..286 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig84712.19741.1prot_M-pyrifera_M_contig84712.19741.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig84712 14..286 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig84712.19741.1

>prot_M-pyrifera_M_contig84712.19741.1 ID=prot_M-pyrifera_M_contig84712.19741.1|Name=mRNA_M-pyrifera_M_contig84712.19741.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=91bp
RLVEVRAHATVGEVREVVRDLTGIGEIDGKILAGFAGDACVEECGLFDGC
TVEVGCRMRGGVELFVKTLTGKTISVEVDPTATIVRMKEKI
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mRNA from alignment at M-pyrifera_M_contig84712:14..286-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig84712.19741.1 ID=mRNA_M-pyrifera_M_contig84712.19741.1|Name=mRNA_M-pyrifera_M_contig84712.19741.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=273bp|location=Sequence derived from alignment at M-pyrifera_M_contig84712:14..286- (Macrocystis pyrifera P11B4 male)
CGCTTGGTGGAGGTCAGAGCGCATGCAACTGTTGGTGAGGTGCGAGAGGT AGTGCGAGACTTGACTGGGATTGGAGAGATTGACGGGAAGATTTTGGCGG GGTTTGCTGGGGACGCTTGTGTGGAGGAGTGTGGGTTGTTTGACGGGTGC ACGGTGGAGGTTGGGTGTCGGATGCGAGGAGGGGTGGAGTTGTTCGTGAA AACACTGACTGGAAAGACGATTTCCGTGGAGGTGGATCCGACTGCCACGA TTGTGCGGATGAAGGAGAAGATT
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig84712:14..286-

>mRNA_M-pyrifera_M_contig84712.19741.1 ID=mRNA_M-pyrifera_M_contig84712.19741.1|Name=mRNA_M-pyrifera_M_contig84712.19741.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=546bp|location=Sequence derived from alignment at M-pyrifera_M_contig84712:14..286- (Macrocystis pyrifera P11B4 male)
CGCTTGGTGGAGGTCAGAGCGCATGCAACTGTTGGTGAGGTGCGAGAGGT
AGTGCGAGACTTGACTGGGATTGGAGAGATTGACGGGAAGATTTTGGCGG
GGTTTGCTGGGGACGCTTGTGTGGAGGAGTGTGGGTTGTTTGACGGGTGC
ACGGTGGAGGTTGGGTGTCGGATGCGAGGAGGGGTGGAGTTGTTCGTGAA
AACACTGACTGGAAAGACGATTTCCGTGGAGGTGGATCCGACTGCCACGA
TTGTGCGGATGAAGGAGAAGATTCGCTTGGTGGAGGTCAGAGCGCATGCA
ACTGTTGGTGAGGTGCGAGAGGTAGTGCGAGACTTGACTGGGATTGGAGA
GATTGACGGGAAGATTTTGGCGGGGTTTGCTGGGGACGCTTGTGTGGAGG
AGTGTGGGTTGTTTGACGGGTGCACGGTGGAGGTTGGGTGTCGGATGCGA
GGAGGGGTGGAGTTGTTCGTGAAAACACTGACTGGAAAGACGATTTCCGT
GGAGGTGGATCCGACTGCCACGATTGTGCGGATGAAGGAGAAGATT
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