mRNA_M-pyrifera_M_contig84635.19729.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig84635.19729.1
Unique NamemRNA_M-pyrifera_M_contig84635.19729.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig84635.19729.1 vs. uniprot
Match: A0A6P7SB34_OCTVU (DNA mismatch repair protein n=2 Tax=Octopus TaxID=6643 RepID=A0A6P7SB34_OCTVU)

HSP 1 Score: 162 bits (409), Expect = 8.460e-42
Identity = 91/250 (36.40%), Postives = 146/250 (58.40%), Query Frame = 1
Query:    1 LRRVADVERALARIHAHGL--KEDDHPDRRAIMYESEKYTARKIRDLAAVVKGFEVASAVIDGFH--TDGKRGEVEPLGVDLESDLAK-TFPRLDSALRFFREQFDLSGAERTGRITPKPGADATYDDAKAQLREAEQAVNGVLADAKRELNCNQLSFFGRPPNRFQIAVPERFASIVPDSWTLKSQQKGKARRYYTPRLLRCIEALNEAEERVAAAEADALRRLFHRFDAHRGAWKAAAECVTILDVLL 735
            L+++ D+ER L+RIHA GL  + ++HPD RAI+YES  Y+ RKI D  + ++GF+VA  +I  F    DG +  +    V ++S  +   FP +   L++F   FD + A++ G I P  G D+ YD A   ++E   A++  L   ++ ++C  + ++G   NR+Q+ VPE     VP+ + L S +KG  +RY T  + R    + +AE+R +AA  D +RR+FH+FD     W  A +C+ +LDVLL
Sbjct:  795 LKKLPDLERILSRIHALGLSNRSNEHPDNRAILYESVTYSKRKIEDFISALEGFKVAQKIIKPFQDKVDGFKSILLRKTVTVKSSSSSGCFPDMAEKLKYFDNGFDHNKAKKDGVIVPNKGVDSDYDGAVKDIKETTNALDRYLDQQRQLMSCKSMVYWGTGKNRYQMEVPENMCKKVPNQYELMSSKKGW-KRYRTKEIERMFAEMTDAEDRRSAALKDTMRRIFHQFDTDYQMWDQAVQCLAVLDVLL 1043          
BLAST of mRNA_M-pyrifera_M_contig84635.19729.1 vs. uniprot
Match: A0A8K1CDA9_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CDA9_PYTOL)

HSP 1 Score: 157 bits (396), Expect = 4.600e-40
Identity = 95/257 (36.96%), Postives = 142/257 (55.25%), Query Frame = 1
Query:    1 LRRVADVERALARIHAHGL--KEDDHPDRRAIMYESEKYTARKIRDLAAVVKGFEVASAVIDGFHTDGKRGEVEPLGVDLE--------SDLAKTFPRLDSALRFFREQFDLSGAERTGRITPKPGADATYDDAKAQLREAEQAVNGVLADAKRELNCNQLSFFG-RPPNRFQIAVPER-FASIVPDSWTLKSQQKGKARRYYTPRLLRCIEALNEAEERVAAAEADALRRLFHRFDAHRGAWKAAAECVTILDVLL 735
            LRR+ DVER L+RIHA G   +  +HPD RAIMYES +Y  RKIRD  +V+ GF+ A  ++  F     + +   L   L+        +D    FP L   L FF+  FD   A ++G I P+ G D  YDDA A +   +  ++  L + +  L C Q+S++G +  +RFQ+ +PE    S  P  + LKS++KG  +R+++P +   +  L+ AE+R   A  D +RR+FH+FD     W  A +C+  LD LL
Sbjct:  709 LRRLPDVERLLSRIHALGSTHRSQEHPDSRAIMYESSQYNIRKIRDFLSVLDGFDAAMDLLQQFGPRFSQFKTPILRTILKKHNLSSNTTDARGHFPDLRDKLDFFKRSFDRQAAAKSGTIVPQDGVDPEYDDACASITRIQSELDDYLREQRTRLKCKQISYWGTKKEDRFQLEIPESALQSSQPKEYELKSRKKGY-KRFHSPTIRDLLSQLSAAEDRKEVALKDQMRRIFHKFDEDYKYWMKAVQCLANLDCLL 964          
BLAST of mRNA_M-pyrifera_M_contig84635.19729.1 vs. uniprot
Match: A0A1S3FBS3_DIPOR (DNA mismatch repair protein n=2 Tax=Dipodomys TaxID=10016 RepID=A0A1S3FBS3_DIPOR)

HSP 1 Score: 156 bits (394), Expect = 8.630e-40
Identity = 94/251 (37.45%), Postives = 148/251 (58.96%), Query Frame = 1
Query:    1 LRRVADVERALARIHAHG--LKEDDHPDRRAIMYESEKYTARKIRDLAAVVKGFEVASAVID--GFHTDGKRGEVEPLGVDLESDLAK-TFPRLDSALRFFREQFDLSGAERTGRITPKPGADATYDDAKAQLREAEQAVNGVLADAKRELNCNQLSFFGRPPNRFQIAVPERFASI-VPDSWTLKSQQKGKARRYYTPRLLRCIEALNEAEERVAAAEADALRRLFHRFDAHRGAWKAAAECVTILDVLL 735
            L+++ D+ER L++IH  G  LK  +HPD RAIMYE   Y+ +KI D  + ++GF+V   +I+  G  T+G + ++    V L++   +  FP L + L  +   FD   A +TG I PK G DA YD A A +RE EQ++   L   +  + C  + ++G   NR+Q+ +PE F +  +P+ + LKS +KG  +RY+T  + + +  L  AEER   +  D +RRLF+ FD +   W++A EC+ +LDVLL
Sbjct:  828 LKKLPDLERLLSKIHNVGFPLKNHNHPDSRAIMYEETTYSKKKIIDFLSTLEGFKVMCKIIEIMGEVTEGFKSKILKQIVTLQAKSPEGRFPDLTAELNRWDTAFDHEKARKTGLIIPKAGFDADYDQALADIRENEQSLLEYLEKQRTRMGCRSIVYWGIGRNRYQLEIPENFTTRNLPEEYELKSTKKG-CKRYWTKTIEKKLANLINAEERRDTSLKDCMRRLFYNFDKNYKDWQSAVECIAVLDVLL 1077          
BLAST of mRNA_M-pyrifera_M_contig84635.19729.1 vs. uniprot
Match: A0A822GXK7_9NEOB ((mimic poison frog) hypothetical protein (Fragment) n=1 Tax=Ranitomeya imitator TaxID=111125 RepID=A0A822GXK7_9NEOB)

HSP 1 Score: 155 bits (391), Expect = 2.040e-39
Identity = 95/251 (37.85%), Postives = 145/251 (57.77%), Query Frame = 1
Query:    1 LRRVADVERALARIHAHG--LKEDDHPDRRAIMYESEKYTARKIRDLAAVVKGFEVASAVIDGFH--TDGKRGEVEPLGVDLESDLAK-TFPRLDSALRFFREQFDLSGAERTGRITPKPGADATYDDAKAQLREAEQAVNGVLADAKRELNCNQLSFFGRPPNRFQIAVPERFASI-VPDSWTLKSQQKGKARRYYTPRLLRCIEALNEAEERVAAAEADALRRLFHRFDAHRGAWKAAAECVTILDVLL 735
            L+++ D+ER L++IH  G  LK  +HPD RAIMYE   Y+ +KI D  + ++GF+V   +        DG + +     V L++   K  FP L + L  +   FD   A +TG ITPK G D+ YD A A +RE EQ++   L   +  + C  + ++G   NR+Q+ +PE FA+  +P+ + LKS +KG  +RY+T  + + +  L  AEER  A+  D +RRLF+ FD +   W++A EC  +LDVLL
Sbjct:  481 LKKLPDLERLLSKIHNVGSPLKSQNHPDTRAIMYEETTYSKKKIIDFLSALEGFKVMCKITRLMEDVADGFKSKTLKQVVTLQTKSPKGRFPDLTAELNRWDTAFDHEKARKTGLITPKAGFDSDYDQALADIRENEQSLLEYLDKQRSRIGCRNIVYWGIGRNRYQLEIPENFATRNLPEEYELKSTKKG-CKRYWTKVIEKKLSNLINAEERRDASLKDCMRRLFYNFDKNHKDWQSAVECTAVLDVLL 730          
BLAST of mRNA_M-pyrifera_M_contig84635.19729.1 vs. uniprot
Match: D4A0U9_RAT (DNA mismatch repair protein n=1 Tax=Rattus norvegicus TaxID=10116 RepID=D4A0U9_RAT)

HSP 1 Score: 155 bits (391), Expect = 2.170e-39
Identity = 95/251 (37.85%), Postives = 145/251 (57.77%), Query Frame = 1
Query:    1 LRRVADVERALARIHAHG--LKEDDHPDRRAIMYESEKYTARKIRDLAAVVKGFEVASAVIDGFH--TDGKRGEVEPLGVDLESDLAK-TFPRLDSALRFFREQFDLSGAERTGRITPKPGADATYDDAKAQLREAEQAVNGVLADAKRELNCNQLSFFGRPPNRFQIAVPERFASI-VPDSWTLKSQQKGKARRYYTPRLLRCIEALNEAEERVAAAEADALRRLFHRFDAHRGAWKAAAECVTILDVLL 735
            L+++ D+ER L++IH  G  LK  +HPD RAIMYE   Y+ +KI D  + ++GF+V   +        DG + +     V L++   K  FP L + L  +   FD   A +TG ITPK G D+ YD A A +RE EQ++   L   +  + C  + ++G   NR+Q+ +PE FA+  +P+ + LKS +KG  +RY+T  + + +  L  AEER  A+  D +RRLF+ FD +   W++A EC  +LDVLL
Sbjct:  787 LKKLPDLERLLSKIHNVGSPLKSQNHPDTRAIMYEETTYSKKKIIDFLSALEGFKVMCKITRLMEDVADGFKSKTLKQVVTLQTKSPKGRFPDLTAELNRWDTAFDHEKARKTGLITPKAGFDSDYDQALADIRENEQSLLEYLDKQRSRIGCRNIVYWGIGRNRYQLEIPENFATRNLPEEYELKSTKKG-CKRYWTKVIEKKLSNLINAEERRDASLKDCMRRLFYNFDKNHKDWQSAVECTAVLDVLL 1036          
BLAST of mRNA_M-pyrifera_M_contig84635.19729.1 vs. uniprot
Match: UPI0020194F01 (DNA mismatch repair protein Msh6 isoform X1 n=2 Tax=Perognathus longimembris pacificus TaxID=214514 RepID=UPI0020194F01)

HSP 1 Score: 154 bits (390), Expect = 2.960e-39
Identity = 93/251 (37.05%), Postives = 146/251 (58.17%), Query Frame = 1
Query:    1 LRRVADVERALARIHAHG--LKEDDHPDRRAIMYESEKYTARKIRDLAAVVKGFEVASAVID--GFHTDGKRGEVEPLGVDLES-DLAKTFPRLDSALRFFREQFDLSGAERTGRITPKPGADATYDDAKAQLREAEQAVNGVLADAKRELNCNQLSFFGRPPNRFQIAVPERFASI-VPDSWTLKSQQKGKARRYYTPRLLRCIEALNEAEERVAAAEADALRRLFHRFDAHRGAWKAAAECVTILDVLL 735
            L+++ D+ER L++IH  G  LK  +HPD RAIMYE   Y+ +KI D  + ++GF++   +I+  G  T+  + ++    V L++ D    FP L + L  +   FD   A +TG I PK G D  YD A A +RE EQ++   L   +  L C  + ++G   NR+Q+ +PE F +  +P+ + LKS +KG  +RY+T  + + +  L  AEER   +  D +RRLF+ FD +   W++A EC+ +LDVLL
Sbjct:  817 LKKLPDLERLLSKIHNVGFPLKNHNHPDSRAIMYEETTYSKKKIIDFLSALEGFKIMCKIIEIMGEVTESLKSKILKQIVTLQTKDPVGRFPDLTAELNRWDTAFDHEKARKTGLIIPKAGFDTDYDQALADIRENEQSLLEYLEKQRTRLGCRNIVYWGIGRNRYQLEIPENFTTRNLPEEYELKSTKKG-CKRYWTKTIEKKLANLINAEERRDTSLKDCMRRLFYNFDKNYKDWQSAVECIAVLDVLL 1066          
BLAST of mRNA_M-pyrifera_M_contig84635.19729.1 vs. uniprot
Match: K3W7B0_GLOUD (DNA mismatch repair protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3W7B0_GLOUD)

HSP 1 Score: 154 bits (388), Expect = 5.440e-39
Identity = 99/263 (37.64%), Postives = 145/263 (55.13%), Query Frame = 1
Query:    1 LRRVADVERALARIHAHGL--KEDDHPDRRAIMYESEKYTARKIRDLAAVVKGFEVASAVIDG-------FHTDGKRGEVEPLGVDLESDLAKT-------FPRLDSALRFFREQFDLSGAERTGRITPKPGADATYDDAKAQLREAEQAVNGVLADAKRELNCNQLSFFG-RPPNRFQIAVPER-FASIVPDSWTLKSQQKGKARRYYTPRLLRCIEALNEAEERVAAAEADALRRLFHRFDAHRGAWKAAAECVTILDVLL 735
            LR++ D+ER L+RIHA G   +  +HPD RAIMYES  Y  RKIR+  AV+ GF+VA  ++ G       F +   +G ++      E D+          FP L + L FF+  FD S A+++G I P  G D  YDDA A +   E  +   LA+ +  L C Q+ ++G +  +RFQ+ VPE   +S  P  + LKS++KG  +R++TP +   +  L  AE R   A  D +R++FHRFD     W  A +C+ +LD LL
Sbjct:  747 LRKLPDLERLLSRIHALGSAHRSKEHPDSRAIMYESNTYNIRKIRNFVAVLNGFDVAMELVQGYGARFSQFSSPILQGILKTRASGKEEDVCTANSLKLGHFPDLRAKLEFFQCSFDHSVAQKSGVIVPPEGFDPEYDDACADIARVEGELQEYLAEQRTALRCKQIVYWGTKKDDRFQLEVPESAVSSKQPKEYELKSRKKGY-KRFHTPTIRGLLAQLVAAETRKEEALKDQMRKVFHRFDGDYKYWLKAVQCLAVLDCLL 1008          
BLAST of mRNA_M-pyrifera_M_contig84635.19729.1 vs. uniprot
Match: A0A5D6XIW8_9STRA (DNA mismatch repair protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XIW8_9STRA)

HSP 1 Score: 154 bits (388), Expect = 5.570e-39
Identity = 101/266 (37.97%), Postives = 145/266 (54.51%), Query Frame = 1
Query:    1 LRRVADVERALARIHAHGL--KEDDHPDRRAIMYESEKYTARKIRDLAAVVKGFEVASAVIDGF-----------------HTDGKRGEVEPLGVDLESDLAKTFPRLDSALRFFREQFDLSGAERTGRITPKPGADATYDDAKAQLREAEQAVNGVLADAKRELNCNQLSFFG-RPPNRFQIAVPERFASIV-PDSWTLKSQQKGKARRYYTPRLLRCIEALNEAEERVAAAEADALRRLFHRFDAHRGAWKAAAECVTILDVLL 735
            LR++ D+ER L+RIHA G   +  +HPD RAIMYES+ Y  RKIRD  AV+ GF++A  ++ G+                   DG  G  EP        L   FP L + L FF+  FD S A+ +G I P  G D  YDDA A +   EQ +   L + +  L C  ++++G +  +RFQ+ VPE   S   P  + LKS++KG  +R++TPR+   +  L  AE R   A  D +R++FH+FDA    W  A +C+++LD LL
Sbjct:  997 LRKLPDLERLLSRIHALGSAHRSKEHPDSRAIMYESKTYNIRKIRDFLAVLNGFDIAMELVRGYGPRFTQFASPILQVILKSRDGGDG-TEPPQQQAGEPLGH-FPDLRANLEFFKHSFDQSIAKESGVIVPPEGFDPEYDDACAAIAGVEQDLQVYLQEQRVALKCKSIAYWGSKKEDRFQLEVPESAVSTKQPKEYELKSRKKGY-KRFHTPRIRDLLAQLAAAEARKDEALRDQMRKVFHKFDADYKYWMKAVQCLSVLDCLL 1259          
BLAST of mRNA_M-pyrifera_M_contig84635.19729.1 vs. uniprot
Match: MSH6_MOUSE (DNA mismatch repair protein Msh6 n=13 Tax=Murinae TaxID=39107 RepID=MSH6_MOUSE)

HSP 1 Score: 152 bits (385), Expect = 1.380e-38
Identity = 98/255 (38.43%), Postives = 146/255 (57.25%), Query Frame = 1
Query:    1 LRRVADVERALARIHAHG--LKEDDHPDRRAIMYESEKYTARKIRDLAAVVKGFEVASAV------IDGFHTDGKRGEVEPLGVDLESDLAK-TFPRLDSALRFFREQFDLSGAERTGRITPKPGADATYDDAKAQLREAEQAVNGVLADAKRELNCNQLSFFGRPPNRFQIAVPERFASI-VPDSWTLKSQQKGKARRYYTPRLLRCIEALNEAEERVAAAEADALRRLFHRFDAHRGAWKAAAECVTILDVLL 735
            L+++ D+ER L++IH  G  LK  +HPD RAIMYE   Y+ +KI D  + ++GF+V   V      + G  T     +V    V L+S   K  FP L + L+ +   FD   A +TG ITPK G D+ YD A A +RE EQ++   L   +  L C  + ++G   NR+Q+ +PE FA+  +P+ + LKS +KG  +RY+T  + + +  L  AEER   +  D +RRLF  FD +   W++A EC+ +LDVLL
Sbjct:  809 LKKLPDLERLLSKIHNVGSPLKSQNHPDSRAIMYEETTYSKKKIIDFLSALEGFKVMCKVSGLLEEVAGGFTSKTLKQV----VTLQSKSPKGRFPDLTAELQRWDTAFDHEKARKTGLITPKAGFDSDYDQALADIRENEQSLLEYLDKQRSRLGCKSIVYWGIGRNRYQLEIPENFATRNLPEEYELKSTKKG-CKRYWTKTIEKKLANLINAEERRDTSLKDCMRRLFCNFDKNHKDWQSAVECIAVLDVLL 1058          
BLAST of mRNA_M-pyrifera_M_contig84635.19729.1 vs. uniprot
Match: D0N012_PHYIT (DNA mismatch repair protein n=11 Tax=Phytophthora TaxID=4783 RepID=D0N012_PHYIT)

HSP 1 Score: 152 bits (383), Expect = 2.520e-38
Identity = 95/273 (34.80%), Postives = 142/273 (52.01%), Query Frame = 1
Query:    1 LRRVADVERALARIHAHG--LKEDDHPDRRAIMYESEKYTARKIRDLAAVVKGFEVAS-------------------------AVIDGFHTDGKRGEVEPLGVDLESDLAKTFPRLDSALRFFREQFDLSGAERTGRITPKPGADATYDDAKAQLREAEQAVNGVLADAKRELNCNQLSFFGRPP-NRFQIAVPERFASIVPDSWTLKSQQKGKARRYYTPRLLRCIEALNEAEERVAAAEADALRRLFHRFDAHRGAWKAAAECVTILDVLL 735
            LR++ D+ER L+RIHA G   +  +HPD RAIMYES+ Y  RKI+D  AV+ GF+ A                          A+ DG   D  RG                FP L   L FF+  FD + A+++G I P+ G D  +D A A++ E E  +   L++ +  L C Q+S++G+   +R+Q+ VPE   S  P  + LKS++KG  +R++TP +   ++ L  AEE+   A  D  RR+FH+FD     W  A +C+ +LD L+
Sbjct:  687 LRKLPDLERLLSRIHALGSAYRSKEHPDSRAIMYESQIYNVRKIKDFLAVLNGFDEAMNLTLELGPRLSQSNSPILQSLLKRYAIEDGVQPDVNRGH---------------FPDLTEKLEFFKRSFDQASAKKSGVIVPQAGIDPEFDAACAEIAEVEAELADYLSEQRSALRCRQISYWGKKKEDRYQLEVPESALSKQPKEYELKSRKKGY-KRFHTPTIRALLKRLATAEEQKEEALKDQTRRIFHKFDEDYKYWMKAVQCLAVLDCLV 943          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig84635.19729.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6P7SB34_OCTVU8.460e-4236.40DNA mismatch repair protein n=2 Tax=Octopus TaxID=... [more]
A0A8K1CDA9_PYTOL4.600e-4036.96Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A1S3FBS3_DIPOR8.630e-4037.45DNA mismatch repair protein n=2 Tax=Dipodomys TaxI... [more]
A0A822GXK7_9NEOB2.040e-3937.85(mimic poison frog) hypothetical protein (Fragment... [more]
D4A0U9_RAT2.170e-3937.85DNA mismatch repair protein n=1 Tax=Rattus norvegi... [more]
UPI0020194F012.960e-3937.05DNA mismatch repair protein Msh6 isoform X1 n=2 Ta... [more]
K3W7B0_GLOUD5.440e-3937.64DNA mismatch repair protein n=1 Tax=Globisporangiu... [more]
A0A5D6XIW8_9STRA5.570e-3937.97DNA mismatch repair protein n=1 Tax=Pythium brassi... [more]
MSH6_MOUSE1.380e-3838.43DNA mismatch repair protein Msh6 n=13 Tax=Murinae ... [more]
D0N012_PHYIT2.520e-3834.80DNA mismatch repair protein n=11 Tax=Phytophthora ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig84635contigM-pyrifera_M_contig84635:69..875 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeMetazoa
Seed ortholog score163.3
Seed ortholog evalue1.4e-37
Seed eggNOG ortholog6500.XP_005105604.1
Preferred nameMsh6
KEGG koko:K08737
KEGG Pathwayko01524,ko03430,ko05200,ko05210,map01524,map03430,map05200,map05210
KEGG ModuleM00295
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000018,GO:0000217,GO:0000400,GO:0000710,GO:0003674,GO:0003676,GO:0003677,GO:0003684,GO:0003690,GO:0003824,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0006139,GO:0006259,GO:0006281,GO:0006298,GO:0006725,GO:0006807,GO:0006915,GO:0006950,GO:0006974,GO:0006996,GO:0007049,GO:0007154,GO:0007165,GO:0008094,GO:0008150,GO:0008152,GO:0008219,GO:0008630,GO:0009314,GO:0009411,GO:0009416,GO:0009628,GO:0009892,GO:0009987,GO:0010605,GO:0012501,GO:0016043,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0019219,GO:0019222,GO:0022402,GO:0022414,GO:0023052,GO:0030983,GO:0031323,GO:0031324,GO:0032135,GO:0032137,GO:0032138,GO:0032300,GO:0032301,GO:0032991,GO:0033554,GO:0034641,GO:0035556,GO:0042623,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043570,GO:0044237,GO:0044238,GO:0044260,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0045910,GO:0045934,GO:0046483,GO:0048519,GO:0048523,GO:0050789,GO:0050794,GO:0050896,GO:0051052,GO:0051053,GO:0051171,GO:0051172,GO:0051276,GO:0051321,GO:0051716,GO:0060255,GO:0061982,GO:0065007,GO:0071704,GO:0071840,GO:0080090,GO:0090304,GO:0097159,GO:0097190,GO:0097193,GO:1901360,GO:1901363,GO:1903046,GO:1990391
EggNOG free text desc.guanine/thymine mispair binding
EggNOG OGs38DKA@33154,3BBVI@33208,3CV2W@33213,COG0249@1,KOG0217@2759
COG Functional cat.L
Best tax levelBilateria
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko03400
Exons2
Model size735
Cds size735
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816753.5759254-CDS-M-pyrifera_M_contig84635:68..3211622816753.5759254-CDS-M-pyrifera_M_contig84635:68..321Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig84635 69..321 +
1692278158.1139553-CDS-M-pyrifera_M_contig84635:68..3211692278158.1139553-CDS-M-pyrifera_M_contig84635:68..321Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig84635 69..321 +
1622816753.589143-CDS-M-pyrifera_M_contig84635:393..8751622816753.589143-CDS-M-pyrifera_M_contig84635:393..875Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig84635 394..875 +
1692278158.1307104-CDS-M-pyrifera_M_contig84635:393..8751692278158.1307104-CDS-M-pyrifera_M_contig84635:393..875Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig84635 394..875 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig84635.19729.1prot_M-pyrifera_M_contig84635.19729.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig84635 69..875 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig84635.19729.1

>prot_M-pyrifera_M_contig84635.19729.1 ID=prot_M-pyrifera_M_contig84635.19729.1|Name=mRNA_M-pyrifera_M_contig84635.19729.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=245bp
LRRVADVERALARIHAHGLKEDDHPDRRAIMYESEKYTARKIRDLAAVVK
GFEVASAVIDGFHTDGKRGEVEPLGVDLESDLAKTFPRLDSALRFFREQF
DLSGAERTGRITPKPGADATYDDAKAQLREAEQAVNGVLADAKRELNCNQ
LSFFGRPPNRFQIAVPERFASIVPDSWTLKSQQKGKARRYYTPRLLRCIE
ALNEAEERVAAAEADALRRLFHRFDAHRGAWKAAAECVTILDVLL
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mRNA from alignment at M-pyrifera_M_contig84635:69..875+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig84635.19729.1 ID=mRNA_M-pyrifera_M_contig84635.19729.1|Name=mRNA_M-pyrifera_M_contig84635.19729.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=807bp|location=Sequence derived from alignment at M-pyrifera_M_contig84635:69..875+ (Macrocystis pyrifera P11B4 male)
TTGCGACGTGTTGCTGATGTGGAACGTGCGTTGGCAAGGATTCATGCACA TGGGTTGAAGGAAGATGATCATCCTGATCGTCGAGCAATCATGTATGAAT CTGAAAAATACACTGCCCGAAAGATCCGCGACCTTGCTGCAGTGGTCAAG GGGTTTGAAGTGGCAAGTGCAGTGATTGATGGGTTCCACACGGATGGGAA ACGTGGGGAAGTGGAACCACTTGGCGTGGATTTAGAATCTGATCTTGCCA AGAGTCCAAGAGATCGTTGTCCTTCTTTGCTGCCCGGAATTCGTTCTGAA TTGCTTGGTCGCGTCGTTGGGACAGCGTTTCCTCGTTTGGATTCTGCATT GCGTTTCTTCCGAGAACAGTTTGATTTGAGTGGTGCAGAGCGCACTGGAA GGATTACTCCAAAACCAGGTGCTGATGCGACGTATGATGATGCCAAGGCT CAATTGCGAGAAGCAGAACAAGCTGTGAATGGTGTCTTGGCTGATGCAAA GCGTGAGTTGAATTGCAACCAACTCTCCTTCTTTGGACGTCCTCCAAACC GATTCCAAATCGCAGTCCCAGAACGATTCGCTTCCATTGTACCAGATTCA TGGACATTGAAATCACAACAAAAAGGAAAAGCACGTCGGTATTACACTCC ACGGTTGTTGCGTTGCATCGAAGCTCTCAACGAAGCAGAGGAGCGTGTTG CAGCAGCAGAAGCTGATGCACTCCGTCGTCTCTTTCACCGCTTTGATGCA CACCGCGGTGCATGGAAAGCTGCTGCAGAATGTGTCACCATCCTCGACGT ACTCCTC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig84635:69..875+

>mRNA_M-pyrifera_M_contig84635.19729.1 ID=mRNA_M-pyrifera_M_contig84635.19729.1|Name=mRNA_M-pyrifera_M_contig84635.19729.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1470bp|location=Sequence derived from alignment at M-pyrifera_M_contig84635:69..875+ (Macrocystis pyrifera P11B4 male)
TTGCGACGTGTTGCTGATGTGGAACGTGCGTTGGCAAGGATTCATGCACA
TGGGTTGAAGGAAGATGATCATCCTGATCGTCGAGCAATCATGTATGAAT
CTGAAAAATACACTGCCCGAAAGATCCGCGACCTTGCTGCAGTGGTCAAG
GGGTTTGAAGTGGCAAGTGCAGTGATTGATGGGTTCCACACGGATGGGAA
ACGTGGGGAAGTGGAACCACTTGGCGTGGATTTAGAATCTGATCTTGCCA
AGATTGCGACGTGTTGCTGATGTGGAACGTGCGTTGGCAAGGATTCATGC
ACATGGGTTGAAGGAAGATGATCATCCTGATCGTCGAGCAATCATGTATG
AATCTGAAAAATACACTGCCCGAAAGATCCGCGACCTTGCTGCAGTGGTC
AAGGGGTTTGAAGTGGCAAGTGCAGTGATTGATGGGTTCCACACGGATGG
GAAACGTGGGGAAGTGGAACCACTTGGCGTGGATTTAGAATCTGATCTTG
CCAAGACGTTTCCTCGTTTGGATTCTGCATTGCGTTTCTTCCGAGAACAG
TTTGATTTGAGTGGTGCAGAGCGCACTGGAAGGATTACTCCAAAACCAGG
TGCTGATGCGACGTATGATGATGCCAAGGCTCAATTGCGAGAAGCAGAAC
AAGCTGTGAATGGTGTCTTGGCTGATGCAAAGCGTGAGTTGAATTGCAAC
CAACTCTCCTTCTTTGGACGTCCTCCAAACCGATTCCAAATCGCAGTCCC
AGAACGATTCGCTTCCATTGTACCAGATTCATGGACATTGAAATCACAAC
AAAAAGGAAAAGCACGTCGGTATTACACTCCACGGTTGTTGCGTTGCATC
GAAGCTCTCAACGAAGCAGAGGAGCGTGTTGCAGCAGCAGAAGCTGATGC
ACTCCGTCGTCTCTTTCACCGCTTTGATGCACACCGCGGTGCATGGAAAG
CTGCTGCAGAATGTGTCACCATCCTCGACGTACTCCTCCGTTTCCTCGTT
TGGATTCTGCATTGCGTTTCTTCCGAGAACAGTTTGATTTGAGTGGTGCA
GAGCGCACTGGAAGGATTACTCCAAAACCAGGTGCTGATGCGACGTATGA
TGATGCCAAGGCTCAATTGCGAGAAGCAGAACAAGCTGTGAATGGTGTCT
TGGCTGATGCAAAGCGTGAGTTGAATTGCAACCAACTCTCCTTCTTTGGA
CGTCCTCCAAACCGATTCCAAATCGCAGTCCCAGAACGATTCGCTTCCAT
TGTACCAGATTCATGGACATTGAAATCACAACAAAAAGGAAAAGCACGTC
GGTATTACACTCCACGGTTGTTGCGTTGCATCGAAGCTCTCAACGAAGCA
GAGGAGCGTGTTGCAGCAGCAGAAGCTGATGCACTCCGTCGTCTCTTTCA
CCGCTTTGATGCACACCGCGGTGCATGGAAAGCTGCTGCAGAATGTGTCA
CCATCCTCGACGTACTCCTC
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