mRNA_M-pyrifera_M_contig109401.1971.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig109401.1971.1
Unique NamemRNA_M-pyrifera_M_contig109401.1971.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig109401.1971.1 vs. uniprot
Match: A0A518AB76_9PLAN (Uncharacterized protein n=3 Tax=Gimesia TaxID=1649453 RepID=A0A518AB76_9PLAN)

HSP 1 Score: 97.8 bits (242), Expect = 1.120e-22
Identity = 44/47 (93.62%), Postives = 46/47 (97.87%), Query Frame = 1 
Query:    1 YASGLELTKRLEFKAIKGEQNLWKINLPDLDEFIIPQGTPGGGQGFF 141
            YASGLEL KRLEFKAIKGEQNLWKINLPDL+EFIIP+GTPGGGQGFF
Sbjct:  439 YASGLELRKRLEFKAIKGEQNLWKINLPDLNEFIIPEGTPGGGQGFF 485
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BLAST of mRNA_M-pyrifera_M_contig109401.1971.1 vs. uniprot
Match: A0A517RKD5_9PLAN (Uncharacterized protein n=1 Tax=Gimesia alba TaxID=2527973 RepID=A0A517RKD5_9PLAN)

HSP 1 Score: 86.7 bits (213), Expect = 1.110e-18
Identity = 38/47 (80.85%), Postives = 43/47 (91.49%), Query Frame = 1 
Query:    1 YASGLELTKRLEFKAIKGEQNLWKINLPDLDEFIIPQGTPGGGQGFF 141
            YASGLEL+KRLEF AIKGE+NLWKI LPDL ++IIP+GTPGGGQG F
Sbjct:  439 YASGLELSKRLEFTAIKGEKNLWKIKLPDLKDYIIPKGTPGGGQGIF 485
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BLAST of mRNA_M-pyrifera_M_contig109401.1971.1 vs. uniprot
Match: UPI001187FE0A (hypothetical protein n=1 Tax=Gimesia maris TaxID=122 RepID=UPI001187FE0A)

HSP 1 Score: 52.4 bits (124), Expect = 1.420e-6
Identity = 22/51 (43.14%), Postives = 34/51 (66.67%), Query Frame = 1 
Query:    4 ASGLELTKRLEFKAIKGEQNLWKINLPDLDEFIIPQGTP-----GGGQGFF 141
            A G++L+K L + A+K ++N+W+I +PDL +  +PQG       G GQGFF
Sbjct:  418 AEGIQLSKWLSYSALKDQENVWQIKIPDLGKLEVPQGIQKGGVIGSGQGFF 468
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BLAST of mRNA_M-pyrifera_M_contig109401.1971.1 vs. uniprot
Match: A0A6I6AL80_9PLAN (Uncharacterized protein n=1 Tax=Gimesia benthica TaxID=2608982 RepID=A0A6I6AL80_9PLAN)

HSP 1 Score: 50.4 bits (119), Expect = 6.820e-6
Identity = 21/52 (40.38%), Postives = 34/52 (65.38%), Query Frame = 1 
Query:    1 YASGLELTKRLEFKAIKGEQNLWKINLPDLDEFIIPQGTP-----GGGQGFF 141
            YA G++L + L+F A    +N+WKI+LP L++ ++P+G       G G+GFF
Sbjct:  378 YARGIQLPELLKFTAAPDRKNVWKIDLPKLNQLVVPEGVETVNENGSGRGFF 429
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BLAST of mRNA_M-pyrifera_M_contig109401.1971.1 vs. uniprot
Match: A0A2E7KJD9_9PLAN (Uncharacterized protein n=3 Tax=Gimesia TaxID=1649453 RepID=A0A2E7KJD9_9PLAN)

HSP 1 Score: 49.3 bits (116), Expect = 1.750e-5
Identity = 22/52 (42.31%), Postives = 32/52 (61.54%), Query Frame = 1 
Query:    1 YASGLELTKRLEFKAIKGEQNLWKINLPDLDEFIIPQGTP-----GGGQGFF 141
            YASG++    L+F A KG+ N+WKI LP+L++ II +        G G GF+
Sbjct:  427 YASGIQFANLLKFTAAKGQDNVWKIKLPELNQLIITEEAKQVEVQGSGGGFY 478
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BLAST of mRNA_M-pyrifera_M_contig109401.1971.1 vs. uniprot
Match: A0A518IHB0_9PLAN (Uncharacterized protein n=2 Tax=Gimesia fumaroli TaxID=2527976 RepID=A0A518IHB0_9PLAN)

HSP 1 Score: 48.1 bits (113), Expect = 4.480e-5
Identity = 20/44 (45.45%), Postives = 28/44 (63.64%), Query Frame = 1 
Query:    4 ASGLELTKRLEFKAIKGEQNLWKINLPDLDEFIIPQGTPGGGQG 135
            A G+ L  ++ F A K +QN+W+INLPDL+   IP+G   G  G
Sbjct:  423 ADGIVLPNQIRFTASKNDQNIWEINLPDLELLKIPEGVQEGSGG 466
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig109401.1971.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
A0A518AB76_9PLAN1.120e-2293.62Uncharacterized protein n=3 Tax=Gimesia TaxID=1649... [more]
A0A517RKD5_9PLAN1.110e-1880.85Uncharacterized protein n=1 Tax=Gimesia alba TaxID... [more]
UPI001187FE0A1.420e-643.14hypothetical protein n=1 Tax=Gimesia maris TaxID=1... [more]
A0A6I6AL80_9PLAN6.820e-640.38Uncharacterized protein n=1 Tax=Gimesia benthica T... [more]
A0A2E7KJD9_9PLAN1.750e-542.31Uncharacterized protein n=3 Tax=Gimesia TaxID=1649... [more]
A0A518IHB0_9PLAN4.480e-545.45Uncharacterized protein n=2 Tax=Gimesia fumaroli T... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig109401contigM-pyrifera_M_contig109401:242..385 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size144
Cds size144
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815604.6186965-CDS-M-pyrifera_M_contig109401:241..3851622815604.6186965-CDS-M-pyrifera_M_contig109401:241..385Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig109401 242..385 -
1692277483.7337508-CDS-M-pyrifera_M_contig109401:241..3851692277483.7337508-CDS-M-pyrifera_M_contig109401:241..385Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig109401 242..385 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig109401.1971.1prot_M-pyrifera_M_contig109401.1971.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig109401 242..385 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig109401.1971.1

>prot_M-pyrifera_M_contig109401.1971.1 ID=prot_M-pyrifera_M_contig109401.1971.1|Name=mRNA_M-pyrifera_M_contig109401.1971.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=48bp
YASGLELTKRLEFKAIKGEQNLWKINLPDLDEFIIPQGTPGGGQGFF*
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mRNA from alignment at M-pyrifera_M_contig109401:242..385-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig109401.1971.1 ID=mRNA_M-pyrifera_M_contig109401.1971.1|Name=mRNA_M-pyrifera_M_contig109401.1971.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=144bp|location=Sequence derived from alignment at M-pyrifera_M_contig109401:242..385- (Macrocystis pyrifera P11B4 male)
TATGCCAGTGGATTGGAATTAACAAAGCGACTGGAATTCAAGGCAATTAA
AGGCGAACAGAACCTCTGGAAAATCAATTTGCCTGATCTGGACGAATTCA
TCATTCCCCAAGGGACCCCCGGCGGAGGTCAGGGATTTTTCTAA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig109401:242..385-

>mRNA_M-pyrifera_M_contig109401.1971.1 ID=mRNA_M-pyrifera_M_contig109401.1971.1|Name=mRNA_M-pyrifera_M_contig109401.1971.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=288bp|location=Sequence derived from alignment at M-pyrifera_M_contig109401:242..385- (Macrocystis pyrifera P11B4 male)
TATGCCAGTGGATTGGAATTAACAAAGCGACTGGAATTCAAGGCAATTAA
AGGCGAACAGAACCTCTGGAAAATCAATTTGCCTGATCTGGACGAATTCA
TCATTCCCCAAGGGACCCCCGGCGGAGGTCAGGGATTTTTCTAATATGCC
AGTGGATTGGAATTAACAAAGCGACTGGAATTCAAGGCAATTAAAGGCGA
ACAGAACCTCTGGAAAATCAATTTGCCTGATCTGGACGAATTCATCATTC
CCCAAGGGACCCCCGGCGGAGGTCAGGGATTTTTCTAA
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