mRNA_M-pyrifera_M_contig109401.1970.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_M-pyrifera_M_contig109401.1970.1
Unique Name	mRNA_M-pyrifera_M_contig109401.1970.1
Type	mRNA
Organism	Macrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))

Homology

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BLAST of mRNA_M-pyrifera_M_contig109401.1970.1 vs. uniprot
Match: A0A517PTY6_9PLAN (Uncharacterized protein n=1 Tax=Gimesia chilikensis TaxID=2605989 RepID=A0A517PTY6_9PLAN)

HSP 1 Score: 110 bits (274), Expect = 8.450e-27
Identity = 50/51 (98.04%), Postives = 51/51 (100.00%), Query Frame = 1

Query:    1 VGWPELSIDDFPPRRDDEPSSLRQEIIDELSDHFACALNRELHKNPDEQLA 153
            +GWPELSIDDFPPRRDDEPSSLRQEIIDELSDHFACALNRELHKNPDEQLA
Sbjct:    1 MGWPELSIDDFPPRRDDEPSSLRQEIIDELSDHFACALNRELHKNPDEQLA 51

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BLAST of mRNA_M-pyrifera_M_contig109401.1970.1 vs. uniprot
Match: A0A350K2W1_9PLAN (Uncharacterized protein (Fragment) n=1 Tax=Planctomycetaceae bacterium TaxID=2026779 RepID=A0A350K2W1_9PLAN)

HSP 1 Score: 100 bits (249), Expect = 2.850e-26
Identity = 46/60 (76.67%), Postives = 51/60 (85.00%), Query Frame = 1

Query:    1 VGWPELSIDDFPPRRDDEPSSLRQEIIDELSDHFACALNRELHKNPDEQLAGDAYWNSLG 180
            + WPELSI+DFPPRRDDEPSSLRQ+IIDELSDHFACALNREL KNPDEQ+A      + G
Sbjct:    1 MNWPELSIEDFPPRRDDEPSSLRQDIIDELSDHFACALNRELLKNPDEQIAKQRVIQNFG 60

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BLAST of mRNA_M-pyrifera_M_contig109401.1970.1 vs. uniprot
Match: A0A518FU63_9PLAN (Uncharacterized protein n=1 Tax=Gimesia panareensis TaxID=2527978 RepID=A0A518FU63_9PLAN)

HSP 1 Score: 106 bits (264), Expect = 2.120e-25
Identity = 48/51 (94.12%), Postives = 50/51 (98.04%), Query Frame = 1

Query:    1 VGWPELSIDDFPPRRDDEPSSLRQEIIDELSDHFACALNRELHKNPDEQLA 153
            + WPELSI+DFPPRRDDEPSSLRQEIIDELSDHFACALNRELHKNPDEQLA
Sbjct:    1 MAWPELSIEDFPPRRDDEPSSLRQEIIDELSDHFACALNRELHKNPDEQLA 51

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BLAST of mRNA_M-pyrifera_M_contig109401.1970.1 vs. uniprot
Match: A0A2E2C493_9PLAN (Uncharacterized protein n=2 Tax=Planctomycetaceae TaxID=126 RepID=A0A2E2C493_9PLAN)

HSP 1 Score: 105 bits (261), Expect = 5.250e-25
Identity = 49/60 (81.67%), Postives = 51/60 (85.00%), Query Frame = 1

Query:    1 VGWPELSIDDFPPRRDDEPSSLRQEIIDELSDHFACALNRELHKNPDEQLAGDAYWNSLG 180
            + WPELSIDDFPPRRDDEPSSLRQ+IIDELSDHFACALNREL KNPDEQLA     N  G
Sbjct:    1 MNWPELSIDDFPPRRDDEPSSLRQDIIDELSDHFACALNRELLKNPDEQLAKQRVLNQFG 60

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BLAST of mRNA_M-pyrifera_M_contig109401.1970.1 vs. uniprot
Match: A0A517QBR5_9PLAN (Uncharacterized protein n=2 Tax=Gimesia panareensis TaxID=2527978 RepID=A0A517QBR5_9PLAN)

HSP 1 Score: 103 bits (258), Expect = 1.410e-24
Identity = 46/51 (90.20%), Postives = 50/51 (98.04%), Query Frame = 1

Query:    1 VGWPELSIDDFPPRRDDEPSSLRQEIIDELSDHFACALNRELHKNPDEQLA 153
            + WPELSI+DFPPRRDDEPSSLRQ+IIDELSDHFACALNRELHKNPDEQ+A
Sbjct:    1 MAWPELSIEDFPPRRDDEPSSLRQDIIDELSDHFACALNRELHKNPDEQVA 51

[Close]

BLAST of mRNA_M-pyrifera_M_contig109401.1970.1 vs. uniprot
Match: A0A518AB47_9PLAN (Uncharacterized protein n=1 Tax=Gimesia panareensis TaxID=2527978 RepID=A0A518AB47_9PLAN)

HSP 1 Score: 102 bits (255), Expect = 2.940e-24
Identity = 44/51 (86.27%), Postives = 49/51 (96.08%), Query Frame = 1

Query:    1 VGWPELSIDDFPPRRDDEPSSLRQEIIDELSDHFACALNRELHKNPDEQLA 153
            + WPE+S+DDFPPRRDDEPSSLRQ+IIDELSDHF CALNRELHKNPDEQ+A
Sbjct:    1 MSWPEISVDDFPPRRDDEPSSLRQDIIDELSDHFVCALNRELHKNPDEQVA 51

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BLAST of mRNA_M-pyrifera_M_contig109401.1970.1 vs. uniprot
Match: A0A517PTZ2_9PLAN (Uncharacterized protein n=1 Tax=Gimesia chilikensis TaxID=2605989 RepID=A0A517PTZ2_9PLAN)

HSP 1 Score: 102 bits (254), Expect = 4.170e-24
Identity = 46/51 (90.20%), Postives = 50/51 (98.04%), Query Frame = 1

Query:    1 VGWPELSIDDFPPRRDDEPSSLRQEIIDELSDHFACALNRELHKNPDEQLA 153
            +GWPE+SI+DFPPRRDDEPSSLRQEIIDELSDHFACALNREL KNPDEQ+A
Sbjct:    1 MGWPEISIEDFPPRRDDEPSSLRQEIIDELSDHFACALNRELLKNPDEQVA 51

[Close]

BLAST of mRNA_M-pyrifera_M_contig109401.1970.1 vs. uniprot
Match: A0A518AB76_9PLAN (Uncharacterized protein n=3 Tax=Gimesia TaxID=1649453 RepID=A0A518AB76_9PLAN)

HSP 1 Score: 102 bits (254), Expect = 4.960e-24
Identity = 46/49 (93.88%), Postives = 48/49 (97.96%), Query Frame = 1

Query:    7 WPELSIDDFPPRRDDEPSSLRQEIIDELSDHFACALNRELHKNPDEQLA 153
            WPELSIDDFPPRRDDEPSSLRQ+IIDELSDHFACALNRELHKNPDE +A
Sbjct:    3 WPELSIDDFPPRRDDEPSSLRQDIIDELSDHFACALNRELHKNPDELIA 51

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BLAST of mRNA_M-pyrifera_M_contig109401.1970.1 vs. uniprot
Match: UPI00118A5258 (prealbumin-like fold domain-containing protein n=1 Tax=Gimesia maris TaxID=122 RepID=UPI00118A5258)

HSP 1 Score: 101 bits (252), Expect = 7.820e-24
Identity = 47/60 (78.33%), Postives = 50/60 (83.33%), Query Frame = 1

Query:    1 VGWPELSIDDFPPRRDDEPSSLRQEIIDELSDHFACALNRELHKNPDEQLAGDAYWNSLG 180
            + WPELSI+DFPPRRDDEPSSLRQ+IIDELSDHFACALNREL KNPDEQ A     N  G
Sbjct:    1 MNWPELSIEDFPPRRDDEPSSLRQDIIDELSDHFACALNRELLKNPDEQTAKQRVLNQFG 60

[Close]

BLAST of mRNA_M-pyrifera_M_contig109401.1970.1 vs. uniprot
Match: A0A3D3R6I8_9PLAN (Uncharacterized protein n=5 Tax=Planctomycetaceae TaxID=126 RepID=A0A3D3R6I8_9PLAN)

HSP 1 Score: 101 bits (252), Expect = 1.020e-23
Identity = 47/60 (78.33%), Postives = 50/60 (83.33%), Query Frame = 1

Query:    1 VGWPELSIDDFPPRRDDEPSSLRQEIIDELSDHFACALNRELHKNPDEQLAGDAYWNSLG 180
            + WPELSI+DFPPRRDDEPSSLRQ+IIDELSDHFACALNREL KNPDEQ A     N  G
Sbjct:    1 MNWPELSIEDFPPRRDDEPSSLRQDIIDELSDHFACALNRELLKNPDEQTAKQRVLNQFG 60

The following BLAST results are available for this feature:

BLAST of mRNA_M-pyrifera_M_contig109401.1970.1 vs. uniprot

BLAST of mRNA_M-pyrifera_M_contig109401.1970.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
A0A517PTY6_9PLAN	8.450e-27	98.04	Uncharacterized protein n=1 Tax=Gimesia chilikensi...	[more]
A0A350K2W1_9PLAN	2.850e-26	76.67	Uncharacterized protein (Fragment) n=1 Tax=Plancto...	[more]
A0A518FU63_9PLAN	2.120e-25	94.12	Uncharacterized protein n=1 Tax=Gimesia panareensi...	[more]
A0A2E2C493_9PLAN	5.250e-25	81.67	Uncharacterized protein n=2 Tax=Planctomycetaceae ...	[more]
A0A517QBR5_9PLAN	1.410e-24	90.20	Uncharacterized protein n=2 Tax=Gimesia panareensi...	[more]
A0A518AB47_9PLAN	2.940e-24	86.27	Uncharacterized protein n=1 Tax=Gimesia panareensi...	[more]
A0A517PTZ2_9PLAN	4.170e-24	90.20	Uncharacterized protein n=1 Tax=Gimesia chilikensi...	[more]
A0A518AB76_9PLAN	4.960e-24	93.88	Uncharacterized protein n=3 Tax=Gimesia TaxID=1649...	[more]
UPI00118A5258	7.820e-24	78.33	prealbumin-like fold domain-containing protein n=1...	[more]
A0A3D3R6I8_9PLAN	1.020e-23	78.33	Uncharacterized protein n=5 Tax=Planctomycetaceae ...	[more]

Pages

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
M-pyrifera_M_contig109401	contig	M-pyrifera_M_contig109401:2..198 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90	2022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male	2021-02-24

Properties


Property Name	Value
Hectar predicted targeting category	other localisation
Exons	1
Model size	197
Cds size	195
Stop	0
Start	0

Relationships

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622815604.5881445-CDS-M-pyrifera_M_contig109401:3..198	1622815604.5881445-CDS-M-pyrifera_M_contig109401:3..198	Macrocystis pyrifera P11B4 male	CDS	M-pyrifera_M_contig109401 4..198 -
1692277483.723712-CDS-M-pyrifera_M_contig109401:3..198	1692277483.723712-CDS-M-pyrifera_M_contig109401:3..198	Macrocystis pyrifera P11B4 male	CDS	M-pyrifera_M_contig109401 4..198 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_M-pyrifera_M_contig109401.1970.1	prot_M-pyrifera_M_contig109401.1970.1	Macrocystis pyrifera P11B4 male	polypeptide	M-pyrifera_M_contig109401 4..198 -

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at M-pyrifera_M_contig109401:2..198-
coding sequence from alignment at M-pyrifera_M_contig109401:2..198-

protein sequence of mRNA_M-pyrifera_M_contig109401.1970.1

>prot_M-pyrifera_M_contig109401.1970.1 ID=prot_M-pyrifera_M_contig109401.1970.1|Name=mRNA_M-pyrifera_M_contig109401.1970.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=65bp
VGWPELSIDDFPPRRDDEPSSLRQEIIDELSDHFACALNRELHKNPDEQL
AGDAYWNSLGIRSKW

mRNA from alignment at M-pyrifera_M_contig109401:2..198-

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_M-pyrifera_M_contig109401.1970.1 ID=mRNA_M-pyrifera_M_contig109401.1970.1|Name=mRNA_M-pyrifera_M_contig109401.1970.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=197bp|location=Sequence derived from alignment at M-pyrifera_M_contig109401:2..198- (Macrocystis pyrifera P11B4 male)
GTGGGCTGGCCTGAGCTCAGTATTGACGATTTTCCGCCGCGTCGGGACGA
CGAGCCGTCGTCATTGCGACAGGAGATTATTGATGAACTCAGCGATCATT
TTGCGTGTGCCCTGAATCGGGAACTGCACAAGAATCCGGACGAGCAACTG
GCGGGGGACGCGTACTGGAACAGTTTGGGGATCCGATCAAAGTGGCC

Coding sequence (CDS) from alignment at M-pyrifera_M_contig109401:2..198-

>mRNA_M-pyrifera_M_contig109401.1970.1 ID=mRNA_M-pyrifera_M_contig109401.1970.1|Name=mRNA_M-pyrifera_M_contig109401.1970.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=390bp|location=Sequence derived from alignment at M-pyrifera_M_contig109401:2..198- (Macrocystis pyrifera P11B4 male)
GTGGGCTGGCCTGAGCTCAGTATTGACGATTTTCCGCCGCGTCGGGACGA
CGAGCCGTCGTCATTGCGACAGGAGATTATTGATGAACTCAGCGATCATT
TTGCGTGTGCCCTGAATCGGGAACTGCACAAGAATCCGGACGAGCAACTG
GCGGGGGACGCGTACTGGAACAGTTTGGGGATCCGATCAAAGTGGGTGGG
CTGGCCTGAGCTCAGTATTGACGATTTTCCGCCGCGTCGGGACGACGAGC
CGTCGTCATTGCGACAGGAGATTATTGATGAACTCAGCGATCATTTTGCG
TGTGCCCTGAATCGGGAACTGCACAAGAATCCGGACGAGCAACTGGCGGG
GGACGCGTACTGGAACAGTTTGGGGATCCGATCAAAGTGG