mRNA_M-pyrifera_M_contig84421.19685.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig84421.19685.1
Unique NamemRNA_M-pyrifera_M_contig84421.19685.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig84421.19685.1 vs. uniprot
Match: A0A8J9S112_9CHLO (Probable EKC/KEOPS complex subunit LAGE3 n=1 Tax=Coccomyxa sp. Obi TaxID=2315456 RepID=A0A8J9S112_9CHLO)

HSP 1 Score: 56.6 bits (135), Expect = 2.850e-8
Identity = 26/67 (38.81%), Postives = 44/67 (65.67%), Query Frame = 1 
Query:   46 SEEHADIMKESLEAEGDLRPHLSHTKFSVEGSTLHVSVAAANPRALRANISSFYDMAGVTARTLAEF 246
            SE  A +++++L  + +LRP L   + +V+G+TLH+  +A + R LRA + +FYD+ G+  RTL  F
Sbjct:   54 SEADAQVVRDALAVDPELRPKLVTRELTVDGNTLHIFFSAVDTRTLRAAVGTFYDLLGLATRTLEAF 120
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig84421.19685.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A8J9S112_9CHLO2.850e-838.81Probable EKC/KEOPS complex subunit LAGE3 n=1 Tax=C... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig84421contigM-pyrifera_M_contig84421:365..622 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score60.8
Seed ortholog evalue3.5e-07
Seed eggNOG ortholog325452.fgenesh_scip_prom.46568.5194
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Transcription factor Pcc1
EggNOG OGs2CVGH@1,2RRZK@2759,3QIC5@4776
COG Functional cat.S
Best tax levelPeronosporales
Best eggNOG OGNA|NA|NA
Exons1
Model size258
Cds size258
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816751.5356886-CDS-M-pyrifera_M_contig84421:364..6221622816751.5356886-CDS-M-pyrifera_M_contig84421:364..622Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig84421 365..622 +
1692278156.9314737-CDS-M-pyrifera_M_contig84421:364..6221692278156.9314737-CDS-M-pyrifera_M_contig84421:364..622Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig84421 365..622 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig84421.19685.1prot_M-pyrifera_M_contig84421.19685.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig84421 365..622 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig84421.19685.1

>prot_M-pyrifera_M_contig84421.19685.1 ID=prot_M-pyrifera_M_contig84421.19685.1|Name=mRNA_M-pyrifera_M_contig84421.19685.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=86bp
LFPSDFYSNITVRMLSEEHADIMKESLEAEGDLRPHLSHTKFSVEGSTLH
VSVAAANPRALRANISSFYDMAGVTARTLAEFAEF*
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mRNA from alignment at M-pyrifera_M_contig84421:365..622+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig84421.19685.1 ID=mRNA_M-pyrifera_M_contig84421.19685.1|Name=mRNA_M-pyrifera_M_contig84421.19685.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=258bp|location=Sequence derived from alignment at M-pyrifera_M_contig84421:365..622+ (Macrocystis pyrifera P11B4 male)
CTCTTTCCTTCTGATTTTTACAGTAATATTACCGTACGGATGTTATCAGA
AGAACATGCTGACATTATGAAAGAATCCCTTGAAGCAGAAGGGGACCTTC
GTCCACATCTATCACATACCAAATTTTCTGTTGAAGGGTCTACCCTTCAT
GTCTCCGTCGCAGCTGCCAACCCCCGTGCTCTTCGTGCCAACATTAGCAG
TTTCTATGACATGGCAGGTGTTACAGCAAGAACCCTAGCCGAATTTGCAG
AATTTTAG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig84421:365..622+

>mRNA_M-pyrifera_M_contig84421.19685.1 ID=mRNA_M-pyrifera_M_contig84421.19685.1|Name=mRNA_M-pyrifera_M_contig84421.19685.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=516bp|location=Sequence derived from alignment at M-pyrifera_M_contig84421:365..622+ (Macrocystis pyrifera P11B4 male)
CTCTTTCCTTCTGATTTTTACAGTAATATTACCGTACGGATGTTATCAGA
AGAACATGCTGACATTATGAAAGAATCCCTTGAAGCAGAAGGGGACCTTC
GTCCACATCTATCACATACCAAATTTTCTGTTGAAGGGTCTACCCTTCAT
GTCTCCGTCGCAGCTGCCAACCCCCGTGCTCTTCGTGCCAACATTAGCAG
TTTCTATGACATGGCAGGTGTTACAGCAAGAACCCTAGCCGAATTTGCAG
AATTTTAGCTCTTTCCTTCTGATTTTTACAGTAATATTACCGTACGGATG
TTATCAGAAGAACATGCTGACATTATGAAAGAATCCCTTGAAGCAGAAGG
GGACCTTCGTCCACATCTATCACATACCAAATTTTCTGTTGAAGGGTCTA
CCCTTCATGTCTCCGTCGCAGCTGCCAACCCCCGTGCTCTTCGTGCCAAC
ATTAGCAGTTTCTATGACATGGCAGGTGTTACAGCAAGAACCCTAGCCGA
ATTTGCAGAATTTTAG
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