mRNA_M-pyrifera_M_contig109397.1965.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig109397.1965.1
Unique NamemRNA_M-pyrifera_M_contig109397.1965.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig109397.1965.1 vs. uniprot
Match: A0A6I6AFN7_9PLAN (Uncharacterized protein n=7 Tax=Gimesia TaxID=1649453 RepID=A0A6I6AFN7_9PLAN)

HSP 1 Score: 105 bits (262), Expect = 1.980e-23
Identity = 55/55 (100.00%), Postives = 55/55 (100.00%), Query Frame = 1 
Query:    7 MYFVVARPMLSQIGQLQSELVSVQQDMDKLVGAKTSAWQVNNLLTVLNSQAKQLS 171
            MYFVVARPMLSQIGQLQSELVSVQQDMDKLVGAKTSAWQVNNLLTVLNSQAKQLS
Sbjct:    1 MYFVVARPMLSQIGQLQSELVSVQQDMDKLVGAKTSAWQVNNLLTVLNSQAKQLS 55
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BLAST of mRNA_M-pyrifera_M_contig109397.1965.1 vs. uniprot
Match: A0A518AES4_9PLAN (Uncharacterized protein n=6 Tax=Gimesia panareensis TaxID=2527978 RepID=A0A518AES4_9PLAN)

HSP 1 Score: 105 bits (262), Expect = 3.180e-23
Identity = 54/57 (94.74%), Postives = 57/57 (100.00%), Query Frame = 1 
Query:    1 LSMYFVVARPMLSQIGQLQSELVSVQQDMDKLVGAKTSAWQVNNLLTVLNSQAKQLS 171
            LSMYF+VARPM+SQIGQLQ+ELVSVQQDMDKLVGAKTSAWQVNNLLTVLNSQAKQLS
Sbjct:   43 LSMYFMVARPMMSQIGQLQTELVSVQQDMDKLVGAKTSAWQVNNLLTVLNSQAKQLS 99
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BLAST of mRNA_M-pyrifera_M_contig109397.1965.1 vs. uniprot
Match: A0A517XJ68_9PLAN (Uncharacterized protein n=6 Tax=Gimesia TaxID=1649453 RepID=A0A517XJ68_9PLAN)

HSP 1 Score: 101 bits (251), Expect = 1.030e-21
Identity = 51/57 (89.47%), Postives = 56/57 (98.25%), Query Frame = 1 
Query:    1 LSMYFVVARPMLSQIGQLQSELVSVQQDMDKLVGAKTSAWQVNNLLTVLNSQAKQLS 171
            L MYF+VARPML+QIGQLQ+ELV+VQQDMDKLVGAKTSAWQVNNLLTVLNSQAKQL+
Sbjct:   36 LGMYFMVARPMLTQIGQLQTELVAVQQDMDKLVGAKTSAWQVNNLLTVLNSQAKQLA 92
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BLAST of mRNA_M-pyrifera_M_contig109397.1965.1 vs. uniprot
Match: A6C1P8_9PLAN (Uncharacterized protein n=2 Tax=Planctomycetaceae TaxID=126 RepID=A6C1P8_9PLAN)

HSP 1 Score: 100 bits (248), Expect = 2.470e-21
Identity = 50/57 (87.72%), Postives = 56/57 (98.25%), Query Frame = 1 
Query:    1 LSMYFVVARPMLSQIGQLQSELVSVQQDMDKLVGAKTSAWQVNNLLTVLNSQAKQLS 171
            L MYF+VARPML+Q+GQLQ+ELV+VQQDMDKLVGAKTSAWQVNNLLTVLNSQAKQL+
Sbjct:   26 LGMYFMVARPMLTQMGQLQTELVAVQQDMDKLVGAKTSAWQVNNLLTVLNSQAKQLA 82
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BLAST of mRNA_M-pyrifera_M_contig109397.1965.1 vs. uniprot
Match: A0A2E2BVU8_9PLAN (Uncharacterized protein n=4 Tax=Planctomycetaceae TaxID=126 RepID=A0A2E2BVU8_9PLAN)

HSP 1 Score: 98.6 bits (244), Expect = 8.830e-21
Identity = 50/54 (92.59%), Postives = 53/54 (98.15%), Query Frame = 1 
Query:    1 LSMYFVVARPMLSQIGQLQSELVSVQQDMDKLVGAKTSAWQVNNLLTVLNSQAK 162
            L MYF+VARPMLSQIGQLQ+ELV+VQQDMDKLVGAKTSAWQVNNLLTVLNSQAK
Sbjct:   26 LGMYFMVARPMLSQIGQLQTELVAVQQDMDKLVGAKTSAWQVNNLLTVLNSQAK 79
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BLAST of mRNA_M-pyrifera_M_contig109397.1965.1 vs. uniprot
Match: A0A518IK12_9PLAN (Uncharacterized protein n=4 Tax=Gimesia TaxID=1649453 RepID=A0A518IK12_9PLAN)

HSP 1 Score: 96.3 bits (238), Expect = 7.170e-20
Identity = 49/57 (85.96%), Postives = 54/57 (94.74%), Query Frame = 1 
Query:    1 LSMYFVVARPMLSQIGQLQSELVSVQQDMDKLVGAKTSAWQVNNLLTVLNSQAKQLS 171
            L MYF+VARPMLSQI  LQ+ELV+VQQDMDKLVGAKTSAWQVNNLL+VLNSQAKQL+
Sbjct:   43 LGMYFMVARPMLSQIDHLQTELVAVQQDMDKLVGAKTSAWQVNNLLSVLNSQAKQLT 99
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BLAST of mRNA_M-pyrifera_M_contig109397.1965.1 vs. uniprot
Match: A0A517VQF1_9PLAN (Uncharacterized protein n=4 Tax=Gimesia aquarii TaxID=2527964 RepID=A0A517VQF1_9PLAN)

HSP 1 Score: 92.8 bits (229), Expect = 1.250e-18
Identity = 47/54 (87.04%), Postives = 52/54 (96.30%), Query Frame = 1 
Query:    1 LSMYFVVARPMLSQIGQLQSELVSVQQDMDKLVGAKTSAWQVNNLLTVLNSQAK 162
            LSMYF+VARPML+QIGQLQ+ELV VQ DMDKLVGAKTSAWQVNNLL+VLNSQA+
Sbjct:   43 LSMYFMVARPMLNQIGQLQAELVIVQNDMDKLVGAKTSAWQVNNLLSVLNSQAQ 96
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig109397.1965.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
A0A6I6AFN7_9PLAN1.980e-23100.00Uncharacterized protein n=7 Tax=Gimesia TaxID=1649... [more]
A0A518AES4_9PLAN3.180e-2394.74Uncharacterized protein n=6 Tax=Gimesia panareensi... [more]
A0A517XJ68_9PLAN1.030e-2189.47Uncharacterized protein n=6 Tax=Gimesia TaxID=1649... [more]
A6C1P8_9PLAN2.470e-2187.72Uncharacterized protein n=2 Tax=Planctomycetaceae ... [more]
A0A2E2BVU8_9PLAN8.830e-2192.59Uncharacterized protein n=4 Tax=Planctomycetaceae ... [more]
A0A518IK12_9PLAN7.170e-2085.96Uncharacterized protein n=4 Tax=Gimesia TaxID=1649... [more]
A0A517VQF1_9PLAN1.250e-1887.04Uncharacterized protein n=4 Tax=Gimesia aquarii Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig109397contigM-pyrifera_M_contig109397:3..605 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score98.6
Seed ortholog evalue3.5e-18
Seed eggNOG ortholog344747.PM8797T_13003
Hectar predicted targeting categoryother localisation
EggNOG OGs2F3SM@1,2J30J@203682,33WJ5@2
Best tax levelPlanctomycetes
Best eggNOG OGNA|NA|NA
Exons1
Model size603
Cds size597
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815604.162117-UTR-M-pyrifera_M_contig109397:2..81622815604.162117-UTR-M-pyrifera_M_contig109397:2..8Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig109397 3..8 +
1692277483.4894996-UTR-M-pyrifera_M_contig109397:2..81692277483.4894996-UTR-M-pyrifera_M_contig109397:2..8Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig109397 3..8 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815604.1760552-CDS-M-pyrifera_M_contig109397:8..6051622815604.1760552-CDS-M-pyrifera_M_contig109397:8..605Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig109397 9..605 +
1692277483.5100844-CDS-M-pyrifera_M_contig109397:8..6051692277483.5100844-CDS-M-pyrifera_M_contig109397:8..605Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig109397 9..605 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig109397.1965.1prot_M-pyrifera_M_contig109397.1965.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig109397 9..605 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig109397.1965.1

>prot_M-pyrifera_M_contig109397.1965.1 ID=prot_M-pyrifera_M_contig109397.1965.1|Name=mRNA_M-pyrifera_M_contig109397.1965.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=199bp
MYFVVARPMLSQIGQLQSELVSVQQDMDKLVGAKTSAWQVNNLLTVLNSQ
AKQLSEAKVAVAEIRDLRILLEKEAEQTEEALASIQKIDQFQKQVLQQEG
LTTKARTALDDMLAMQDRLASQEQQVKQTQSTLDEMIKLQKLAANQSTGI
KDAQTAFSEFLNFKQQIVDQSEQLEVARTNSQKMIDLQQSLISQSEPLA
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mRNA from alignment at M-pyrifera_M_contig109397:3..605+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig109397.1965.1 ID=mRNA_M-pyrifera_M_contig109397.1965.1|Name=mRNA_M-pyrifera_M_contig109397.1965.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=603bp|location=Sequence derived from alignment at M-pyrifera_M_contig109397:3..605+ (Macrocystis pyrifera P11B4 male)
CTTAGTATGTATTTTGTAGTAGCACGGCCGATGCTGAGTCAGATCGGTCA
GTTGCAGTCAGAGTTGGTGTCAGTCCAACAGGATATGGATAAACTGGTTG
GTGCCAAAACCAGTGCCTGGCAGGTCAACAATCTGTTGACCGTACTCAAT
TCGCAGGCCAAACAGCTCTCCGAAGCCAAAGTAGCTGTGGCAGAGATTCG
CGATCTTCGAATCTTACTGGAAAAAGAAGCTGAGCAGACCGAAGAGGCAC
TCGCTTCCATCCAAAAGATCGATCAGTTTCAGAAACAGGTTCTCCAGCAG
GAAGGCTTAACCACCAAAGCCCGTACCGCGCTGGATGATATGCTGGCGAT
GCAGGATCGCCTGGCCTCACAGGAGCAGCAGGTCAAACAGACCCAGTCGA
CACTGGATGAAATGATCAAGCTGCAGAAGCTGGCTGCTAATCAGTCCACA
GGCATCAAAGATGCTCAGACAGCCTTTAGTGAGTTTCTGAATTTCAAGCA
GCAGATTGTTGATCAGTCAGAGCAGTTGGAAGTTGCCCGTACCAACAGCC
AGAAGATGATTGACCTGCAGCAGAGCCTGATTTCCCAGTCAGAACCGCTG
GCA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig109397:3..605+

>mRNA_M-pyrifera_M_contig109397.1965.1 ID=mRNA_M-pyrifera_M_contig109397.1965.1|Name=mRNA_M-pyrifera_M_contig109397.1965.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1194bp|location=Sequence derived from alignment at M-pyrifera_M_contig109397:3..605+ (Macrocystis pyrifera P11B4 male)
ATGTATTTTGTAGTAGCACGGCCGATGCTGAGTCAGATCGGTCAGTTGCA
GTCAGAGTTGGTGTCAGTCCAACAGGATATGGATAAACTGGTTGGTGCCA
AAACCAGTGCCTGGCAGGTCAACAATCTGTTGACCGTACTCAATTCGCAG
GCCAAACAGCTCTCCGAAGCCAAAGTAGCTGTGGCAGAGATTCGCGATCT
TCGAATCTTACTGGAAAAAGAAGCTGAGCAGACCGAAGAGGCACTCGCTT
CCATCCAAAAGATCGATCAGTTTCAGAAACAGGTTCTCCAGCAGGAAGGC
TTAACCACCAAAGCCCGTACCGCGCTGGATGATATGCTGGCGATGCAGGA
TCGCCTGGCCTCACAGGAGCAGCAGGTCAAACAGACCCAGTCGACACTGG
ATGAAATGATCAAGCTGCAGAAGCTGGCTGCTAATCAGTCCACAGGCATC
AAAGATGCTCAGACAGCCTTTAGTGAGTTTCTGAATTTCAAGCAGCAGAT
TGTTGATCAGTCAGAGCAGTTGGAAGTTGCCCGTACCAACAGCCAGAAGA
TGATTGACCTGCAGCAGAGCCTGATTTCCCAGTCAGAACCGCTGGCAATG
TATTTTGTAGTAGCACGGCCGATGCTGAGTCAGATCGGTCAGTTGCAGTC
AGAGTTGGTGTCAGTCCAACAGGATATGGATAAACTGGTTGGTGCCAAAA
CCAGTGCCTGGCAGGTCAACAATCTGTTGACCGTACTCAATTCGCAGGCC
AAACAGCTCTCCGAAGCCAAAGTAGCTGTGGCAGAGATTCGCGATCTTCG
AATCTTACTGGAAAAAGAAGCTGAGCAGACCGAAGAGGCACTCGCTTCCA
TCCAAAAGATCGATCAGTTTCAGAAACAGGTTCTCCAGCAGGAAGGCTTA
ACCACCAAAGCCCGTACCGCGCTGGATGATATGCTGGCGATGCAGGATCG
CCTGGCCTCACAGGAGCAGCAGGTCAAACAGACCCAGTCGACACTGGATG
AAATGATCAAGCTGCAGAAGCTGGCTGCTAATCAGTCCACAGGCATCAAA
GATGCTCAGACAGCCTTTAGTGAGTTTCTGAATTTCAAGCAGCAGATTGT
TGATCAGTCAGAGCAGTTGGAAGTTGCCCGTACCAACAGCCAGAAGATGA
TTGACCTGCAGCAGAGCCTGATTTCCCAGTCAGAACCGCTGGCA
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