prot_M-pyrifera_M_contig84036.19605.1 (polypeptide) Macrocystis pyrifera P11B4 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_M-pyrifera_M_contig84036.19605.1
Unique Nameprot_M-pyrifera_M_contig84036.19605.1
Typepolypeptide
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Sequence length74
Homology
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BLAST of mRNA_M-pyrifera_M_contig84036.19605.1 vs. uniprot
Match: D8LGJ5_ECTSI (Hypothetical leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGJ5_ECTSI)

HSP 1 Score: 103 bits (257), Expect = 4.210e-24
Identity = 47/52 (90.38%), Postives = 48/52 (92.31%), Query Frame = 0 
Query:    1 MPALRHLDVSHNALCRMEPLDGRDLPPRLETLNMSHNRISRIGGIGHCFALR 52
            MPALRHLDVSHN LCRMEP+DGRDLPPRLETLNMSHNRISRIGGI  CF LR
Sbjct: 1107 MPALRHLDVSHNLLCRMEPMDGRDLPPRLETLNMSHNRISRIGGIAQCFLLR 1158
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BLAST of mRNA_M-pyrifera_M_contig84036.19605.1 vs. uniprot
Match: A0A6H5JAS8_9PHAE (EF-hand domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JAS8_9PHAE)

HSP 1 Score: 102 bits (255), Expect = 7.830e-24
Identity = 47/52 (90.38%), Postives = 48/52 (92.31%), Query Frame = 0 
Query:    1 MPALRHLDVSHNALCRMEPLDGRDLPPRLETLNMSHNRISRIGGIGHCFALR 52
            MPALRHLDVSHN LCRMEP+DGRDLPPRLETLNMSHNRISRIGGI  CF LR
Sbjct: 1257 MPALRHLDVSHNLLCRMEPMDGRDLPPRLETLNMSHNRISRIGGITQCFLLR 1308
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BLAST of mRNA_M-pyrifera_M_contig84036.19605.1 vs. uniprot
Match: A0A836CC45_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CC45_9STRA)

HSP 1 Score: 73.2 bits (178), Expect = 1.540e-14
Identity = 38/67 (56.72%), Postives = 47/67 (70.15%), Query Frame = 0 
Query:    1 MPALRHLDVSHNALCRMEPLDGRD----LPPRLETLNMSHNRISRIGG-IGHCFALRVVNLRHNRIK 62
            +PALRHLD SHN L R+EP+        LP  LETL++SHNRI+RIGG +  C  LRVV L HNR++
Sbjct:   27 LPALRHLDASHNLLTRVEPVGSGGAAARLPRGLETLDLSHNRIARIGGGVAGCARLRVVRLAHNRLR 93
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig84036.19605.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D8LGJ5_ECTSI4.210e-2490.38Hypothetical leucine rich repeat protein n=1 Tax=E... [more]
A0A6H5JAS8_9PHAE7.830e-2490.38EF-hand domain-containing protein n=1 Tax=Ectocarp... [more]
A0A836CC45_9STRA1.540e-1456.72Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0 of Macrocystis pyrifera male
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR032675Leucine-rich repeat domain superfamilyGENE3D3.80.10.10coord: 1..68
e-value: 4.6E-14
score: 53.7
IPR001611Leucine-rich repeatPFAMPF13855LRR_8coord: 2..61
e-value: 1.5E-6
score: 27.9
IPR001611Leucine-rich repeatPROSITEPS51450LRRcoord: 50..70
score: 5.148
IPR001611Leucine-rich repeatPROSITEPS51450LRRcoord: 3..24
score: 6.634
IPR001611Leucine-rich repeatPROSITEPS51450LRRcoord: 28..49
score: 8.343
NoneNo IPR availablePANTHERPTHR15454NISCHARIN RELATEDcoord: 3..61
NoneNo IPR availableSUPERFAMILY52058L domain-likecoord: 1..66

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig84036contigM-pyrifera_M_contig84036:173..394 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Macrocystis pyrifera male2022-09-29
Diamond blastp: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-16
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig84036.19605.1mRNA_M-pyrifera_M_contig84036.19605.1Macrocystis pyrifera P11B4 malemRNAM-pyrifera_M_contig84036 161..394 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_M-pyrifera_M_contig84036.19605.1 ID=prot_M-pyrifera_M_contig84036.19605.1|Name=mRNA_M-pyrifera_M_contig84036.19605.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=74bp
MPALRHLDVSHNALCRMEPLDGRDLPPRLETLNMSHNRISRIGGIGHCFA
LRVVNLRHNRIKVSLLFFFCGPT*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR032675LRR_dom_sf
IPR001611Leu-rich_rpt