mRNA_M-pyrifera_M_contig84036.19605.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig84036.19605.1
Unique NamemRNA_M-pyrifera_M_contig84036.19605.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig84036.19605.1 vs. uniprot
Match: D8LGJ5_ECTSI (Hypothetical leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGJ5_ECTSI)

HSP 1 Score: 110 bits (274), Expect = 2.520e-26
Identity = 51/56 (91.07%), Postives = 52/56 (92.86%), Query Frame = 1 
Query:    1 VLTTMPALRHLDVSHNALCRMEPLDGRDLPPRLETLNMSHNRISRIGGIGHCFALR 168
            VLTTMPALRHLDVSHN LCRMEP+DGRDLPPRLETLNMSHNRISRIGGI  CF LR
Sbjct: 1103 VLTTMPALRHLDVSHNLLCRMEPMDGRDLPPRLETLNMSHNRISRIGGIAQCFLLR 1158
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BLAST of mRNA_M-pyrifera_M_contig84036.19605.1 vs. uniprot
Match: A0A6H5JAS8_9PHAE (EF-hand domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JAS8_9PHAE)

HSP 1 Score: 109 bits (272), Expect = 4.680e-26
Identity = 51/56 (91.07%), Postives = 52/56 (92.86%), Query Frame = 1 
Query:    1 VLTTMPALRHLDVSHNALCRMEPLDGRDLPPRLETLNMSHNRISRIGGIGHCFALR 168
            VLTTMPALRHLDVSHN LCRMEP+DGRDLPPRLETLNMSHNRISRIGGI  CF LR
Sbjct: 1253 VLTTMPALRHLDVSHNLLCRMEPMDGRDLPPRLETLNMSHNRISRIGGITQCFLLR 1308
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BLAST of mRNA_M-pyrifera_M_contig84036.19605.1 vs. uniprot
Match: A0A836CC45_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CC45_9STRA)

HSP 1 Score: 73.9 bits (180), Expect = 9.040e-15
Identity = 39/70 (55.71%), Postives = 48/70 (68.57%), Query Frame = 1 
Query:    4 LTTMPALRHLDVSHNALCRMEPLDGRD----LPPRLETLNMSHNRISRIGG-IGHCFALRVVNLRHNRIK 198
            L  +PALRHLD SHN L R+EP+        LP  LETL++SHNRI+RIGG +  C  LRVV L HNR++
Sbjct:   24 LAELPALRHLDASHNLLTRVEPVGSGGAAARLPRGLETLDLSHNRIARIGGGVAGCARLRVVRLAHNRLR 93
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig84036.19605.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D8LGJ5_ECTSI2.520e-2691.07Hypothetical leucine rich repeat protein n=1 Tax=E... [more]
A0A6H5JAS8_9PHAE4.680e-2691.07EF-hand domain-containing protein n=1 Tax=Ectocarp... [more]
A0A836CC45_9STRA9.040e-1555.71Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig84036contigM-pyrifera_M_contig84036:161..394 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score103.6
Seed ortholog evalue4e-20
Seed eggNOG ortholog2880.D8LGJ5
Hectar predicted targeting categoryother localisation
EggNOG free text desc.axoneme assembly
EggNOG OGsCOG4886@1,KOG0531@2759
Ec32 ortholog descriptionHypothetical leucine rich repeat protein
Ec32 orthologEc-10_001830.1
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size234
Cds size222
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816747.6150687-UTR-M-pyrifera_M_contig84036:160..1721622816747.6150687-UTR-M-pyrifera_M_contig84036:160..172Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig84036 161..172 +
1692278154.430923-UTR-M-pyrifera_M_contig84036:160..1721692278154.430923-UTR-M-pyrifera_M_contig84036:160..172Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig84036 161..172 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816747.6265726-CDS-M-pyrifera_M_contig84036:172..3941622816747.6265726-CDS-M-pyrifera_M_contig84036:172..394Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig84036 173..394 +
1692278154.4528987-CDS-M-pyrifera_M_contig84036:172..3941692278154.4528987-CDS-M-pyrifera_M_contig84036:172..394Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig84036 173..394 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig84036.19605.1prot_M-pyrifera_M_contig84036.19605.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig84036 173..394 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig84036.19605.1

>prot_M-pyrifera_M_contig84036.19605.1 ID=prot_M-pyrifera_M_contig84036.19605.1|Name=mRNA_M-pyrifera_M_contig84036.19605.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=74bp
MPALRHLDVSHNALCRMEPLDGRDLPPRLETLNMSHNRISRIGGIGHCFA
LRVVNLRHNRIKVSLLFFFCGPT*
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mRNA from alignment at M-pyrifera_M_contig84036:161..394+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig84036.19605.1 ID=mRNA_M-pyrifera_M_contig84036.19605.1|Name=mRNA_M-pyrifera_M_contig84036.19605.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=234bp|location=Sequence derived from alignment at M-pyrifera_M_contig84036:161..394+ (Macrocystis pyrifera P11B4 male)
GTCTTGACGACGATGCCGGCTCTCCGACACCTGGACGTCAGCCACAACGC
TCTCTGTCGGATGGAGCCTCTGGATGGGCGAGATCTCCCCCCTCGACTCG
AGACTCTCAACATGAGCCACAACCGCATCTCGCGGATAGGCGGCATCGGG
CATTGCTTCGCCTTGCGAGTGGTGAACCTCCGTCACAATCGCATCAAGGT
ATCACTTCTTTTTTTTTTTTGCGGGCCAACATAG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig84036:161..394+

>mRNA_M-pyrifera_M_contig84036.19605.1 ID=mRNA_M-pyrifera_M_contig84036.19605.1|Name=mRNA_M-pyrifera_M_contig84036.19605.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=444bp|location=Sequence derived from alignment at M-pyrifera_M_contig84036:161..394+ (Macrocystis pyrifera P11B4 male)
ATGCCGGCTCTCCGACACCTGGACGTCAGCCACAACGCTCTCTGTCGGAT
GGAGCCTCTGGATGGGCGAGATCTCCCCCCTCGACTCGAGACTCTCAACA
TGAGCCACAACCGCATCTCGCGGATAGGCGGCATCGGGCATTGCTTCGCC
TTGCGAGTGGTGAACCTCCGTCACAATCGCATCAAGGTATCACTTCTTTT
TTTTTTTTGCGGGCCAACATAGATGCCGGCTCTCCGACACCTGGACGTCA
GCCACAACGCTCTCTGTCGGATGGAGCCTCTGGATGGGCGAGATCTCCCC
CCTCGACTCGAGACTCTCAACATGAGCCACAACCGCATCTCGCGGATAGG
CGGCATCGGGCATTGCTTCGCCTTGCGAGTGGTGAACCTCCGTCACAATC
GCATCAAGGTATCACTTCTTTTTTTTTTTTGCGGGCCAACATAG
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