mRNA_M-pyrifera_M_contig83834.19577.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig83834.19577.1
Unique NamemRNA_M-pyrifera_M_contig83834.19577.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig83834.19577.1 vs. uniprot
Match: A0A7S1CCA5_9STRA (Hypothetical protein n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1CCA5_9STRA)

HSP 1 Score: 95.9 bits (237), Expect = 9.870e-22
Identity = 49/87 (56.32%), Postives = 65/87 (74.71%), Query Frame = 1 
Query:  148 KTQVLYEVKPAEIPADMAALEAFVRSISLDGLTWGEKFEIEEVGYGIQKLIVQCVVIDDKVDLADLEEALEANEDVGSIDQLTMQKL 408
            ++Q++ EVKP E   DM ALEA VRS++L+GL+WGE+F + +V +GIQKL+VQCV++DD V L DL E LEA   V S+D  TM KL
Sbjct:  146 RSQLVIEVKPEEAGQDMKALEAAVRSVALEGLSWGEEFLVVDVAFGIQKLVVQCVIVDDLVMLDDLLEPLEALPGVQSVDLNTMSKL 232
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BLAST of mRNA_M-pyrifera_M_contig83834.19577.1 vs. uniprot
Match: A0A5A8DV64_CAFRO (EF1_GNE domain-containing protein n=3 Tax=Sar TaxID=2698737 RepID=A0A5A8DV64_CAFRO)

HSP 1 Score: 92.0 bits (227), Expect = 3.230e-20
Identity = 43/87 (49.43%), Postives = 65/87 (74.71%), Query Frame = 1 
Query:  148 KTQVLYEVKPAEIPADMAALEAFVRSISLDGLTWGEKFEIEEVGYGIQKLIVQCVVIDDKVDLADLEEALEANEDVGSIDQLTMQKL 408
            KT V++EVKPAE+  D+  +EA +R+I+ +GL WG++F+   V +GI KL++  VV D+K  L D+EE +E+ E+VGS+DQL MQK+
Sbjct:  149 KTSVVWEVKPAEVETDLDEVEAKIRAITQEGLRWGQEFKKVPVAFGIVKLVISAVVEDEKTSLTDIEEEIESWEEVGSLDQLDMQKV 235
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BLAST of mRNA_M-pyrifera_M_contig83834.19577.1 vs. uniprot
Match: A0A6G0WMX9_9STRA (EF1_GNE domain-containing protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WMX9_9STRA)

HSP 1 Score: 87.0 bits (214), Expect = 1.020e-18
Identity = 42/92 (45.65%), Postives = 65/92 (70.65%), Query Frame = 1 
Query:  136 RPAAKTQVLYEVKPAEIPADMAALEAFVRSISLDGLTWGEKFEIEEVGYGIQKLIVQCVVIDDKVDLADLEEALEANED-VGSIDQLTMQKL 408
            +P  ++QV+ EVKP E   D+  L A ++ + +DGLTWGE  ++  V +GI+KL++QC++IDDKV + D+ EA+EA ED V S+D  +M K+
Sbjct:   98 KPIERSQVVIEVKPWEAETDLEELAAKIKEVEVDGLTWGEGHKLVPVAFGIKKLLIQCIIIDDKVLMDDITEAIEAFEDYVQSVDIASMNKM 189
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BLAST of mRNA_M-pyrifera_M_contig83834.19577.1 vs. uniprot
Match: A0A6G0WJF4_9STRA (EF1_GNE domain-containing protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WJF4_9STRA)

HSP 1 Score: 87.0 bits (214), Expect = 2.340e-18
Identity = 42/92 (45.65%), Postives = 65/92 (70.65%), Query Frame = 1 
Query:  136 RPAAKTQVLYEVKPAEIPADMAALEAFVRSISLDGLTWGEKFEIEEVGYGIQKLIVQCVVIDDKVDLADLEEALEANED-VGSIDQLTMQKL 408
            +P  ++QV+ EVKP E   D+  L A ++ + +DGLTWGE  ++  V +GI+KL++QC++IDDKV + D+ EA+EA ED V S+D  +M K+
Sbjct:  138 KPIERSQVVIEVKPWEAETDLEELAAKIKQVEVDGLTWGEGHKLVPVAFGIKKLLIQCIIIDDKVLMDDITEAIEAFEDYVQSVDIASMNKM 229
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BLAST of mRNA_M-pyrifera_M_contig83834.19577.1 vs. uniprot
Match: A0A8J5I4Y8_9STRA (EF1_GNE domain-containing protein n=1 Tax=Phytophthora aleatoria TaxID=2496075 RepID=A0A8J5I4Y8_9STRA)

HSP 1 Score: 84.7 bits (208), Expect = 4.520e-18
Identity = 43/93 (46.24%), Postives = 65/93 (69.89%), Query Frame = 1 
Query:  133 VRPAAKTQVLYEVKPAEIPADMAALEAFVRSISLDGLTWGEKFEIEEVGYGIQKLIVQCVVIDDKVDLADLEEALEANED-VGSIDQLTMQKL 408
            ++P  ++QV+ EVKP E   D+  L A ++++ +DGLTWGE  ++  V +GI+KL+VQCV+IDD V L D+ +A+E  ED V S+D  +M KL
Sbjct:   72 LKPVERSQVVIEVKPWEAETDLEELAAKIKALPVDGLTWGEGHKLVPVAFGIKKLLVQCVIIDDLVLLDDITDAIEGFEDYVQSVDVASMNKL 164
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BLAST of mRNA_M-pyrifera_M_contig83834.19577.1 vs. uniprot
Match: A0A485L9S1_9STRA (Aste57867_18212 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485L9S1_9STRA)

HSP 1 Score: 85.1 bits (209), Expect = 5.430e-18
Identity = 41/92 (44.57%), Postives = 66/92 (71.74%), Query Frame = 1 
Query:  136 RPAAKTQVLYEVKPAEIPADMAALEAFVRSISLDGLTWGEKFEIEEVGYGIQKLIVQCVVIDDKVDLADLEEALEANED-VGSIDQLTMQKL 408
            +P  ++QV+ EVKP E   D+  L A ++++ +DGL+WGE  ++  V +GI+KL+VQC+++DDKV L D+ +A+EA ED V S+D  +M K+
Sbjct:   96 KPIERSQVVIEVKPWEAETDLEELAAQIKALEIDGLSWGEGHKLVPVAFGIKKLLVQCIIVDDKVLLDDITDAIEAFEDYVQSVDIASMNKV 187
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BLAST of mRNA_M-pyrifera_M_contig83834.19577.1 vs. uniprot
Match: A0A1V9ZBQ3_9STRA (EF-1 guanine nucleotide exchange domain-containing protein n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9ZBQ3_9STRA)

HSP 1 Score: 83.6 bits (205), Expect = 2.280e-17
Identity = 42/92 (45.65%), Postives = 65/92 (70.65%), Query Frame = 1 
Query:  136 RPAAKTQVLYEVKPAEIPADMAALEAFVRSISLDGLTWGEKFEIEEVGYGIQKLIVQCVVIDDKVDLADLEEALEANED-VGSIDQLTMQKL 408
            +P  ++QV+ EVKP E+  D+ AL A ++++ ++GLTWGE  +   V +GI+KL+VQC++IDD V L D+ EA+E  ED V S+D  +M K+
Sbjct:   99 KPIERSQVVIEVKPWEMETDLEALAAKIKALEINGLTWGEGHKTVPVAFGIKKLLVQCIIIDDLVLLDDITEAIEKFEDDVQSVDIASMNKM 190
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BLAST of mRNA_M-pyrifera_M_contig83834.19577.1 vs. uniprot
Match: A0A7S2UXP5_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UXP5_9STRA)

HSP 1 Score: 84.0 bits (206), Expect = 3.710e-17
Identity = 39/92 (42.39%), Postives = 65/92 (70.65%), Query Frame = 1 
Query:  136 RPAAKTQVLYEVKPAEIPADMAALEAFVRSISLDGLTWGEKFEIEEVGYGIQKLIVQCVVIDDKVDLADLEEALEANED-VGSIDQLTMQKL 408
            +P  ++Q+++EVKP E   D+ +L A + ++  +GL+WGE +EI+ V +GI KL++ CV++DD V + D+ + +EA ED V S+D LTM K+
Sbjct:  141 KPVERSQLIFEVKPWEADQDLKSLFAKITALKKEGLSWGEGYEIKPVAFGIMKLVMSCVIVDDLVGMDDVTDPIEAMEDEVQSVDVLTMNKM 232
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BLAST of mRNA_M-pyrifera_M_contig83834.19577.1 vs. uniprot
Match: A0A484DZW9_BRELC (EF1_GNE domain-containing protein n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484DZW9_BRELC)

HSP 1 Score: 83.6 bits (205), Expect = 4.500e-17
Identity = 41/92 (44.57%), Postives = 65/92 (70.65%), Query Frame = 1 
Query:  136 RPAAKTQVLYEVKPAEIPADMAALEAFVRSISLDGLTWGEKFEIEEVGYGIQKLIVQCVVIDDKVDLADLEEALEANED-VGSIDQLTMQKL 408
            +P  ++QV+ EVKP E   D+  L A ++++ ++GLTWGE  ++  + +GI+KL+VQCV++D+ V L D+ EA+EA ED V S+D  +M KL
Sbjct:  133 KPVERSQVVIEVKPWETETDLEVLAAKIKALRIEGLTWGEGHKLVPIAFGIKKLLVQCVIVDELVLLDDITEAIEAFEDDVQSVDIASMNKL 224
[Close]
BLAST of mRNA_M-pyrifera_M_contig83834.19577.1 vs. uniprot
Match: G4YEA4_PHYSP (EF1_GNE domain-containing protein n=3 Tax=Phytophthora TaxID=4783 RepID=G4YEA4_PHYSP)

HSP 1 Score: 82.8 bits (203), Expect = 4.510e-17
Identity = 43/91 (47.25%), Postives = 63/91 (69.23%), Query Frame = 1 
Query:  139 PAAKTQVLYEVKPAEIPADMAALEAFVRSISLDGLTWGEKFEIEEVGYGIQKLIVQCVVIDDKVDLADLEEALEANED-VGSIDQLTMQKL 408
            P  ++QV+ EVKP E   D+  L A ++++ ++GLTWGE  ++  V +GI+KL+VQCV+IDD V L D+ EA+E  ED V S+D  +M KL
Sbjct:  100 PVERSQVVIEVKPWEAETDLEELAAKIKALPVEGLTWGEGHKLVPVAFGIKKLLVQCVIIDDLVLLDDITEAIEGFEDYVQSVDIASMNKL 190
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig83834.19577.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S1CCA5_9STRA9.870e-2256.32Hypothetical protein n=1 Tax=Bicosoecida sp. CB-20... [more]
A0A5A8DV64_CAFRO3.230e-2049.43EF1_GNE domain-containing protein n=3 Tax=Sar TaxI... [more]
A0A6G0WMX9_9STRA1.020e-1845.65EF1_GNE domain-containing protein n=1 Tax=Aphanomy... [more]
A0A6G0WJF4_9STRA2.340e-1845.65EF1_GNE domain-containing protein n=1 Tax=Aphanomy... [more]
A0A8J5I4Y8_9STRA4.520e-1846.24EF1_GNE domain-containing protein n=1 Tax=Phytopht... [more]
A0A485L9S1_9STRA5.430e-1844.57Aste57867_18212 protein n=1 Tax=Aphanomyces stella... [more]
A0A1V9ZBQ3_9STRA2.280e-1745.65EF-1 guanine nucleotide exchange domain-containing... [more]
A0A7S2UXP5_9STRA3.710e-1742.39Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A484DZW9_BRELC4.500e-1744.57EF1_GNE domain-containing protein n=1 Tax=Bremia l... [more]
G4YEA4_PHYSP4.510e-1747.25EF1_GNE domain-containing protein n=3 Tax=Phytopht... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig83834contigM-pyrifera_M_contig83834:479..889 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score84.7
Seed ortholog evalue3.6e-14
Seed eggNOG ortholog653948.CCA18813
Preferred nameCARS
KEGG rclassRC00055,RC00523
KEGG koko:K01866,ko:K01868,ko:K01873,ko:K01875,ko:K01883,ko:K03232,ko:K15410
KEGG ReactionR02918,R03650,R03662,R03663,R03665,R08218
KEGG Pathwayko00970,ko05168,map00970,map05168
KEGG ModuleM00359,M00360
Hectar predicted targeting categoryother localisation
GOsGO:0000049,GO:0000166,GO:0003674,GO:0003676,GO:0003723,GO:0003746,GO:0003824,GO:0004812,GO:0004817,GO:0005488,GO:0005515,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005853,GO:0006082,GO:0006139,GO:0006399,GO:0006412,GO:0006414,GO:0006418,GO:0006423,GO:0006518,GO:0006520,GO:0006725,GO:0006807,GO:0008135,GO:0008144,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016070,GO:0016874,GO:0016875,GO:0017076,GO:0019538,GO:0019752,GO:0030554,GO:0032553,GO:0032555,GO:0032559,GO:0032991,GO:0034641,GO:0034645,GO:0034660,GO:0035639,GO:0036094,GO:0042802,GO:0042803,GO:0043038,GO:0043039,GO:0043043,GO:0043167,GO:0043168,GO:0043170,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0046983,GO:0071704,GO:0090304,GO:0097159,GO:0097367,GO:0140098,GO:0140101,GO:1901265,GO:1901360,GO:1901363,GO:1901564,GO:1901566,GO:1901576
EggNOG free text desc.translation elongation factor activity
EggNOG OGsCOG2092@1,KOG1668@2759
EC6.1.1.1,6.1.1.11,6.1.1.16,6.1.1.3,6.1.1.9
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko01007,ko03012,ko03016,ko03029
Exons1
Model size411
Cds size411
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816746.3312628-CDS-M-pyrifera_M_contig83834:478..8891622816746.3312628-CDS-M-pyrifera_M_contig83834:478..889Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig83834 479..889 -
1692278153.6042547-CDS-M-pyrifera_M_contig83834:478..8891692278153.6042547-CDS-M-pyrifera_M_contig83834:478..889Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig83834 479..889 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig83834.19577.1prot_M-pyrifera_M_contig83834.19577.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig83834 479..889 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig83834.19577.1

>prot_M-pyrifera_M_contig83834.19577.1 ID=prot_M-pyrifera_M_contig83834.19577.1|Name=mRNA_M-pyrifera_M_contig83834.19577.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=137bp
AAAAEEDDDEDDDDDLFGDDSDDDGAMLAAAKKAEEAASKKKKKVRPAAK
TQVLYEVKPAEIPADMAALEAFVRSISLDGLTWGEKFEIEEVGYGIQKLI
VQCVVIDDKVDLADLEEALEANEDVGSIDQLTMQKL*
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mRNA from alignment at M-pyrifera_M_contig83834:479..889-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig83834.19577.1 ID=mRNA_M-pyrifera_M_contig83834.19577.1|Name=mRNA_M-pyrifera_M_contig83834.19577.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=411bp|location=Sequence derived from alignment at M-pyrifera_M_contig83834:479..889- (Macrocystis pyrifera P11B4 male)
GCCGCTGCAGCGGAGGAGGATGACGATGAGGATGACGACGACGATTTGTT
CGGTGACGATTCCGACGATGATGGTGCCATGCTCGCTGCTGCCAAGAAGG
CGGAGGAGGCCGCCTCCAAGAAGAAGAAGAAGGTGCGCCCAGCCGCCAAG
ACGCAGGTGCTGTACGAGGTGAAGCCCGCGGAAATCCCAGCAGACATGGC
TGCTCTGGAAGCCTTTGTGCGCTCCATCTCTTTGGACGGCCTCACGTGGG
GCGAAAAGTTCGAAATCGAGGAGGTCGGCTACGGCATCCAGAAGCTCATC
GTGCAGTGCGTCGTCATCGACGACAAGGTCGACCTCGCTGACCTCGAAGA
GGCCCTCGAAGCCAACGAGGACGTCGGATCCATCGACCAGCTCACCATGC
AAAAGTTGTAA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig83834:479..889-

>mRNA_M-pyrifera_M_contig83834.19577.1 ID=mRNA_M-pyrifera_M_contig83834.19577.1|Name=mRNA_M-pyrifera_M_contig83834.19577.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=822bp|location=Sequence derived from alignment at M-pyrifera_M_contig83834:479..889- (Macrocystis pyrifera P11B4 male)
GCCGCTGCAGCGGAGGAGGATGACGATGAGGATGACGACGACGATTTGTT
CGGTGACGATTCCGACGATGATGGTGCCATGCTCGCTGCTGCCAAGAAGG
CGGAGGAGGCCGCCTCCAAGAAGAAGAAGAAGGTGCGCCCAGCCGCCAAG
ACGCAGGTGCTGTACGAGGTGAAGCCCGCGGAAATCCCAGCAGACATGGC
TGCTCTGGAAGCCTTTGTGCGCTCCATCTCTTTGGACGGCCTCACGTGGG
GCGAAAAGTTCGAAATCGAGGAGGTCGGCTACGGCATCCAGAAGCTCATC
GTGCAGTGCGTCGTCATCGACGACAAGGTCGACCTCGCTGACCTCGAAGA
GGCCCTCGAAGCCAACGAGGACGTCGGATCCATCGACCAGCTCACCATGC
AAAAGTTGTAAGCCGCTGCAGCGGAGGAGGATGACGATGAGGATGACGAC
GACGATTTGTTCGGTGACGATTCCGACGATGATGGTGCCATGCTCGCTGC
TGCCAAGAAGGCGGAGGAGGCCGCCTCCAAGAAGAAGAAGAAGGTGCGCC
CAGCCGCCAAGACGCAGGTGCTGTACGAGGTGAAGCCCGCGGAAATCCCA
GCAGACATGGCTGCTCTGGAAGCCTTTGTGCGCTCCATCTCTTTGGACGG
CCTCACGTGGGGCGAAAAGTTCGAAATCGAGGAGGTCGGCTACGGCATCC
AGAAGCTCATCGTGCAGTGCGTCGTCATCGACGACAAGGTCGACCTCGCT
GACCTCGAAGAGGCCCTCGAAGCCAACGAGGACGTCGGATCCATCGACCA
GCTCACCATGCAAAAGTTGTAA
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